Wall clock time and date at job start Mon Mar 30 2020 01:00:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.46768 * 2 1 4 4 C 1.50699 * 109.47401 * 119.99875 * 2 1 3 5 5 H 1.07997 * 119.99528 * 119.99786 * 4 2 1 6 6 C 1.37875 * 120.00251 * 300.00256 * 4 2 1 7 7 N 1.31519 * 119.99797 * 359.97438 * 6 4 2 8 8 Si 1.86795 * 120.00078 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47133 * 60.00100 * 8 6 4 10 10 H 1.48504 * 109.47206 * 179.97438 * 8 6 4 11 11 H 1.48504 * 109.47276 * 299.99801 * 8 6 4 12 12 C 1.50703 * 109.46797 * 240.00223 * 2 1 3 13 13 O 1.21278 * 119.99432 * 239.99620 * 12 2 1 14 14 N 1.34773 * 119.99820 * 59.99854 * 12 2 1 15 15 C 1.46505 * 119.99474 * 179.97438 * 14 12 2 16 16 C 1.50707 * 109.46699 * 180.02562 * 15 14 12 17 17 N 1.32114 * 120.00952 * 90.00326 * 16 15 14 18 18 C 1.32140 * 120.01674 * 179.97438 * 17 16 15 19 19 C 1.38355 * 120.03390 * 359.97438 * 18 17 16 20 20 N 1.32147 * 120.01638 * 359.97438 * 19 18 17 21 21 C 1.32243 * 119.98480 * 0.02562 * 20 19 18 22 22 Cl 1.73603 * 120.01748 * 180.02562 * 21 20 19 23 23 H 1.08995 * 109.47116 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.46977 * 299.99935 * 1 2 3 25 25 H 1.08992 * 109.47301 * 59.99778 * 1 2 3 26 26 H 0.97003 * 120.00040 * 180.02562 * 7 6 4 27 27 H 0.96999 * 120.00411 * 359.97438 * 14 12 2 28 28 H 1.09001 * 109.46929 * 60.00398 * 15 14 12 29 29 H 1.09001 * 109.47298 * 299.99602 * 15 14 12 30 30 H 1.07999 * 119.98427 * 180.02562 * 18 17 16 31 31 H 1.07999 * 119.99363 * 179.72734 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5884 1.1313 6 6 1.6994 -0.2394 2.4827 7 7 0.9436 0.8302 2.6034 8 14 2.3216 -1.1203 4.0079 9 1 3.8066 -1.1208 4.0080 10 1 1.8272 -0.4199 5.2204 11 1 1.8260 -2.5203 4.0077 12 6 2.0323 -0.7104 -1.2305 13 8 2.7296 -1.6964 -1.1192 14 7 1.7066 -0.2499 -2.4546 15 6 2.1954 -0.9402 -3.6508 16 6 1.6934 -0.2294 -4.8812 17 7 2.4074 0.7427 -5.4203 18 6 1.9676 1.3657 -6.4994 19 6 0.7594 1.0002 -7.0660 20 7 0.0447 0.0273 -6.5285 21 6 0.4841 -0.5966 -5.4485 22 17 -0.4538 -1.8753 -4.7421 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 0.7096 1.1618 3.4844 27 1 1.1487 0.5386 -2.5435 28 1 1.8324 -1.9680 -3.6509 29 1 3.2854 -0.9397 -3.6507 30 1 2.5519 2.1600 -6.9399 31 1 0.3985 1.5127 -7.9454 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000868235013.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:49 Heat of formation + Delta-G solvation = 2.126580 kcal Electronic energy + Delta-G solvation = -17770.167722 eV Core-core repulsion = 14691.747412 eV Total energy + Delta-G solvation = -3078.420311 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 269.067 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.53041 -38.77659 -37.04631 -35.32319 -34.00279 -33.70993 -31.74050 -30.33274 -27.18738 -25.11087 -24.92226 -23.42457 -22.02077 -19.48759 -18.32112 -17.67175 -16.86061 -16.23342 -15.71503 -15.58005 -14.80337 -14.53495 -14.40848 -14.02001 -13.08097 -12.79735 -12.74186 -12.47689 -12.25440 -12.04162 -11.54875 -11.41151 -11.29847 -10.98158 -10.72104 -10.67283 -10.23527 -9.95012 -9.58321 -9.51480 -8.96732 -8.61051 -8.52176 -8.30601 -6.00836 -4.04004 0.18498 0.61374 1.42545 3.09382 3.38496 3.40737 3.46293 3.59021 3.71859 3.86572 3.88783 4.06915 4.50171 4.62462 4.67005 4.83596 5.32407 5.54013 5.70391 5.81826 6.23494 6.63752 6.70247 6.84960 6.90211 6.97444 7.24782 7.49068 7.77216 7.99096 8.13744 8.42168 9.04542 9.20375 9.61332 11.06764 Molecular weight = 269.07amu Principal moments of inertia in cm(-1) A = 0.033632 B = 0.004394 C = 0.004278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.332130 B = 6370.456181 C = 6544.150267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.032 3.968 3 H 0.053 0.947 4 C -0.501 4.501 5 H 0.074 0.926 6 C 0.058 3.942 7 N -0.897 5.897 8 Si 0.901 3.099 9 H -0.276 1.276 10 H -0.288 1.288 11 H -0.276 1.276 12 C 0.524 3.476 13 O -0.542 6.542 14 N -0.738 5.738 15 C 0.169 3.831 16 C 0.091 3.909 17 N -0.407 5.407 18 C 0.053 3.947 19 C 0.069 3.931 20 N -0.433 5.433 21 C 0.134 3.866 22 Cl 0.003 6.997 23 H 0.032 0.968 24 H 0.093 0.907 25 H 0.011 0.989 26 H 0.261 0.739 27 H 0.396 0.604 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.181 0.819 31 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.088 2.121 -19.402 19.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.010 3.990 3 H 0.071 0.929 4 C -0.539 4.539 5 H 0.092 0.908 6 C -0.142 4.142 7 N -0.536 5.536 8 Si 0.729 3.271 9 H -0.202 1.202 10 H -0.214 1.214 11 H -0.202 1.202 12 C 0.314 3.686 13 O -0.417 6.417 14 N -0.394 5.394 15 C 0.044 3.956 16 C -0.051 4.051 17 N -0.122 5.122 18 C -0.108 4.108 19 C -0.092 4.092 20 N -0.149 5.149 21 C -0.034 4.034 22 Cl 0.032 6.968 23 H 0.051 0.949 24 H 0.112 0.888 25 H 0.030 0.970 26 H 0.071 0.929 27 H 0.229 0.771 28 H 0.106 0.894 29 H 0.106 0.894 30 H 0.198 0.802 31 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -1.726 1.356 -19.073 19.199 hybrid contribution -0.177 0.011 0.535 0.564 sum -1.903 1.367 -18.538 18.686 Atomic orbital electron populations 1.21741 0.96482 0.99892 1.00880 1.18875 0.94169 0.96863 0.89048 0.92927 1.21100 1.31039 1.12838 0.88935 0.90767 1.24946 0.95111 0.95066 0.99099 1.69866 1.37094 1.23067 1.23621 0.86501 0.79280 0.79708 0.81607 1.20189 1.21419 1.20193 1.22023 0.78324 0.84260 0.83960 1.90539 1.37846 1.26819 1.86472 1.46219 1.55781 1.32715 1.04656 1.20030 1.00552 0.95253 0.79800 1.22197 0.90587 0.94263 0.98034 1.68495 1.31247 1.04145 1.08339 1.23991 0.95425 0.99056 0.92301 1.23854 0.92222 0.93105 1.00002 1.67887 1.32917 1.06311 1.07834 1.22781 0.92081 0.94575 0.93921 1.98464 1.72164 1.45714 1.80486 0.94884 0.88832 0.97038 0.92929 0.77072 0.89397 0.89392 0.80235 0.80252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.04 8.87 37.16 0.33 -2.71 16 2 C 0.03 0.79 2.64 -92.92 -0.25 0.54 16 3 H 0.05 1.36 8.14 -51.93 -0.42 0.93 16 4 C -0.50 -14.20 8.37 -34.44 -0.29 -14.49 16 5 H 0.07 2.21 6.75 -52.49 -0.35 1.86 16 6 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 7 N -0.90 -25.22 11.32 55.43 0.63 -24.59 16 8 Si 0.90 21.88 29.54 -169.99 -5.02 16.86 16 9 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 10 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 12 C 0.52 11.89 7.15 -10.99 -0.08 11.81 16 13 O -0.54 -13.95 15.46 5.56 0.09 -13.86 16 14 N -0.74 -13.04 5.44 -61.46 -0.33 -13.37 16 15 C 0.17 2.58 5.59 -5.19 -0.03 2.55 16 16 C 0.09 1.19 6.16 -82.36 -0.51 0.68 16 17 N -0.41 -4.90 10.42 -9.26 -0.10 -5.00 16 18 C 0.05 0.43 11.22 -17.38 -0.20 0.24 16 19 C 0.07 0.55 11.22 -17.37 -0.19 0.35 16 20 N -0.43 -4.95 10.49 -10.17 -0.11 -5.05 16 21 C 0.13 1.70 7.28 -17.27 -0.13 1.57 16 22 Cl 0.00 0.04 27.48 -51.86 -1.42 -1.38 16 23 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 24 H 0.09 2.37 6.07 -51.93 -0.32 2.06 16 25 H 0.01 0.21 7.56 -51.93 -0.39 -0.18 16 26 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 27 H 0.40 6.37 7.88 -40.82 -0.32 6.05 16 28 H 0.09 1.35 6.91 -51.93 -0.36 0.99 16 29 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 30 H 0.18 0.77 8.06 -52.49 -0.42 0.35 16 31 H 0.18 0.68 8.06 -52.49 -0.42 0.26 16 LS Contribution 289.29 15.07 4.36 4.36 Total: -1.00 -32.36 289.29 -6.33 -38.69 By element: Atomic # 1 Polarization: 4.26 SS G_CDS: -2.99 Total: 1.27 kcal Atomic # 6 Polarization: 3.51 SS G_CDS: -1.43 Total: 2.08 kcal Atomic # 7 Polarization: -48.10 SS G_CDS: 0.09 Total: -48.01 kcal Atomic # 8 Polarization: -13.95 SS G_CDS: 0.09 Total: -13.86 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Atomic # 17 Polarization: 0.04 SS G_CDS: -1.42 Total: -1.38 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -32.36 -6.33 -38.69 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000868235013.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.813 kcal (2) G-P(sol) polarization free energy of solvation -32.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.687 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds