Wall clock time and date at job start Mon Mar 30 2020 00:37:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30645 * 1 3 3 Si 1.86798 * 119.99758 * 2 1 4 4 H 1.48498 * 109.47153 * 271.27199 * 3 2 1 5 5 H 1.48495 * 109.47069 * 31.27115 * 3 2 1 6 6 H 1.48500 * 109.46994 * 151.27689 * 3 2 1 7 7 C 1.40306 * 120.00037 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00029 * 343.98552 * 7 2 1 9 9 C 1.40536 * 119.99727 * 164.25825 * 7 2 1 10 10 C 1.44189 * 123.71912 * 331.00523 * 9 7 2 11 11 C 1.32765 * 114.43608 * 180.02562 * 10 9 7 12 12 S 1.75475 * 111.36015 * 0.02562 * 11 10 9 13 13 C 1.39551 * 123.71314 * 150.71457 * 9 7 2 14 14 C 1.46231 * 125.22732 * 359.96262 * 13 9 7 15 15 O 1.21761 * 120.00164 * 0.94932 * 14 13 9 16 16 N 1.34779 * 119.99755 * 180.95896 * 14 13 9 17 17 C 1.47018 * 125.65024 * 355.41568 * 16 14 13 18 18 C 1.54323 * 107.27283 * 181.03031 * 17 16 14 19 19 C 1.55157 * 102.94342 * 22.19269 * 18 17 16 20 20 H 1.09005 * 111.00064 * 82.57583 * 19 18 17 21 21 F 1.39900 * 111.00483 * 206.42620 * 19 18 17 22 22 C 1.47432 * 125.64491 * 175.12068 * 16 14 13 23 23 H 0.96998 * 120.00017 * 359.97438 * 1 2 3 24 24 H 1.08003 * 122.77844 * 359.97438 * 10 9 7 25 25 H 1.07990 * 124.31902 * 179.97438 * 11 10 9 26 26 H 1.09000 * 109.88697 * 300.44794 * 17 16 14 27 27 H 1.09003 * 109.87855 * 61.61303 * 17 16 14 28 28 H 1.08996 * 110.72012 * 140.55952 * 18 17 16 29 29 H 1.09005 * 110.72045 * 263.65818 * 18 17 16 30 30 H 1.09003 * 110.36218 * 274.73427 * 22 16 14 31 31 H 1.08998 * 110.36881 * 37.06313 * 22 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2404 1.6178 0.0000 4 1 2.4609 2.0620 -1.3997 5 1 1.4515 2.6447 0.7267 6 1 3.5512 1.4326 0.6728 7 6 2.0080 -1.2151 -0.0005 8 1 1.4994 -2.1324 0.2571 9 6 3.3738 -1.2377 -0.3308 10 6 3.9980 -0.2899 -1.2202 11 6 5.2988 -0.4829 -1.4033 12 16 5.8752 -1.8639 -0.4870 13 6 4.2765 -2.1764 0.1707 14 6 3.9422 -3.2563 1.0982 15 8 2.7945 -3.3982 1.4793 16 7 4.9046 -4.0946 1.5314 17 6 6.3043 -4.0977 1.0818 18 6 7.0229 -5.2413 1.8283 19 6 5.8553 -6.1791 2.2340 20 1 5.5778 -6.8365 1.4100 21 9 6.1802 -6.9193 3.3759 22 6 4.7294 -5.1564 2.5391 23 1 -0.4850 0.8400 0.0004 24 1 3.4525 0.5101 -1.6986 25 1 5.9223 0.1312 -2.0360 26 1 6.3480 -4.2719 0.0067 27 1 6.7736 -3.1442 1.3243 28 1 7.7191 -5.7564 1.1664 29 1 7.5400 -4.8616 2.7095 30 1 4.8457 -4.7491 3.5434 31 1 3.7516 -5.6255 2.4299 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000868634044.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:37:01 Heat of formation + Delta-G solvation = -58.843773 kcal Electronic energy + Delta-G solvation = -18222.025111 eV Core-core repulsion = 15123.084672 eV Total energy + Delta-G solvation = -3098.940439 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 269.063 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -47.63059 -38.99236 -36.87881 -35.66697 -33.36285 -30.82662 -29.52892 -28.57682 -26.41091 -23.37599 -21.77038 -21.35285 -20.06016 -18.73134 -17.44033 -16.89667 -16.10297 -15.47867 -15.28960 -14.78860 -14.67892 -14.22182 -13.75529 -13.60447 -13.40366 -13.19354 -12.59371 -12.31815 -12.13545 -11.79475 -11.67756 -11.51893 -11.18991 -10.96271 -10.71131 -10.62391 -10.46513 -10.08896 -9.55045 -9.43937 -8.63690 -8.06732 -7.70644 -7.36559 -7.19041 -4.59926 1.83486 2.83058 2.86034 3.03650 3.07461 3.40784 3.46169 3.58565 3.76113 4.23605 4.29229 4.56300 4.67124 4.83250 5.05812 5.29228 5.53926 5.64657 5.71937 5.81172 5.93256 6.07816 6.10575 6.16095 6.40496 6.73482 6.87184 6.91372 7.19551 7.61077 8.19578 8.29936 8.39211 8.70026 9.40897 9.78485 Molecular weight = 269.06amu Principal moments of inertia in cm(-1) A = 0.028435 B = 0.006294 C = 0.005366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.450759 B = 4447.783464 C = 5216.941501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.771 5.771 2 C 0.078 3.922 3 Si 0.910 3.090 4 H -0.264 1.264 5 H -0.281 1.281 6 H -0.242 1.242 7 C -0.362 4.362 8 H 0.120 0.880 9 C 0.110 3.890 10 C -0.165 4.165 11 C -0.191 4.191 12 S -0.004 6.004 13 C -0.423 4.423 14 C 0.615 3.385 15 O -0.548 6.548 16 N -0.636 5.636 17 C 0.102 3.898 18 C -0.151 4.151 19 C 0.075 3.925 20 H 0.101 0.899 21 F -0.205 7.205 22 C 0.093 3.907 23 H 0.292 0.708 24 H 0.126 0.874 25 H 0.142 0.858 26 H 0.075 0.925 27 H 0.078 0.922 28 H 0.089 0.911 29 H 0.086 0.914 30 H 0.069 0.931 31 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.259 -3.674 0.064 11.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.393 5.393 2 C -0.146 4.146 3 Si 0.735 3.265 4 H -0.190 1.190 5 H -0.208 1.208 6 H -0.165 1.165 7 C -0.392 4.392 8 H 0.138 0.862 9 C 0.099 3.901 10 C -0.198 4.198 11 C -0.326 4.326 12 S 0.253 5.747 13 C -0.542 4.542 14 C 0.414 3.586 15 O -0.430 6.430 16 N -0.374 5.374 17 C -0.023 4.023 18 C -0.189 4.189 19 C 0.038 3.962 20 H 0.119 0.881 21 F -0.186 7.186 22 C -0.031 4.031 23 H 0.103 0.897 24 H 0.143 0.857 25 H 0.159 0.841 26 H 0.093 0.907 27 H 0.096 0.904 28 H 0.107 0.893 29 H 0.105 0.895 30 H 0.087 0.913 31 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 11.680 -4.274 0.424 12.445 hybrid contribution -0.950 1.489 -0.266 1.786 sum 10.730 -2.786 0.158 11.087 Atomic orbital electron populations 1.69584 1.08405 1.31103 1.30216 1.26512 0.94881 1.02184 0.91070 0.86417 0.81463 0.79240 0.79405 1.18971 1.20761 1.16498 1.19756 0.91226 0.96701 1.31493 0.86223 1.17875 0.92939 0.89480 0.89827 1.21511 0.94642 1.01744 1.01941 1.25243 0.98790 1.03244 1.05277 1.83044 1.13922 1.28530 1.49182 1.22398 0.93876 1.15148 1.22731 1.16505 0.82815 0.79593 0.79637 1.90737 1.19060 1.72904 1.60269 1.48123 1.09745 1.35670 1.43883 1.21862 0.82721 0.98524 0.99209 1.23204 0.97480 0.96284 1.01972 1.22785 0.96153 0.92047 0.85237 0.88112 1.92795 1.93730 1.78697 1.53399 1.22468 0.98881 0.88392 0.93374 0.89654 0.85709 0.84052 0.90682 0.90437 0.89279 0.89521 0.91255 0.89690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -19.80 13.92 55.57 0.77 -19.03 16 2 C 0.08 1.98 5.49 -17.28 -0.09 1.89 16 3 Si 0.91 19.39 24.61 -169.99 -4.18 15.21 16 4 H -0.26 -5.22 6.55 56.52 0.37 -4.85 16 5 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 6 H -0.24 -5.34 6.89 56.52 0.39 -4.96 16 7 C -0.36 -9.98 8.91 -37.94 -0.34 -10.31 16 8 H 0.12 3.70 6.46 -52.49 -0.34 3.36 16 9 C 0.11 2.80 5.18 -106.21 -0.55 2.25 16 10 C -0.17 -3.68 7.60 -39.12 -0.30 -3.98 16 11 C -0.19 -3.75 11.07 28.86 0.32 -3.43 16 12 S 0.00 -0.09 18.52 -107.50 -1.99 -2.08 16 13 C -0.42 -10.28 6.44 -35.88 -0.23 -10.51 16 14 C 0.62 15.01 7.79 -13.05 -0.10 14.91 16 15 O -0.55 -15.32 14.77 5.13 0.08 -15.25 16 16 N -0.64 -12.24 3.33 -172.07 -0.57 -12.81 16 17 C 0.10 1.54 5.17 -3.07 -0.02 1.52 16 18 C -0.15 -1.74 6.76 -24.90 -0.17 -1.90 16 19 C 0.07 0.95 4.87 -24.46 -0.12 0.83 16 20 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 21 F -0.21 -2.75 17.23 2.25 0.04 -2.71 16 22 C 0.09 1.51 6.75 -2.40 -0.02 1.49 16 23 H 0.29 6.64 8.29 -40.82 -0.34 6.30 16 24 H 0.13 2.64 4.87 -52.48 -0.26 2.38 16 25 H 0.14 2.24 8.06 -52.49 -0.42 1.82 16 26 H 0.08 1.13 7.13 -51.93 -0.37 0.76 16 27 H 0.08 1.21 6.66 -51.84 -0.35 0.86 16 28 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 29 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.08 1.45 7.99 -51.93 -0.42 1.03 16 LS Contribution 270.96 15.07 4.08 4.08 Total: -1.00 -29.76 270.96 -6.40 -36.16 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: -3.02 Total: 3.67 kcal Atomic # 6 Polarization: -5.63 SS G_CDS: -1.61 Total: -7.24 kcal Atomic # 7 Polarization: -32.05 SS G_CDS: 0.20 Total: -31.84 kcal Atomic # 8 Polarization: -15.32 SS G_CDS: 0.08 Total: -15.25 kcal Atomic # 9 Polarization: -2.75 SS G_CDS: 0.04 Total: -2.71 kcal Atomic # 14 Polarization: 19.39 SS G_CDS: -4.18 Total: 15.21 kcal Atomic # 16 Polarization: -0.09 SS G_CDS: -1.99 Total: -2.08 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -29.76 -6.40 -36.16 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000868634044.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.684 kcal (2) G-P(sol) polarization free energy of solvation -29.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds