Wall clock time and date at job start Mon Mar 30 2020 00:37:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30645 * 1 3 3 Si 1.86798 * 119.99758 * 2 1 4 4 H 1.48498 * 109.47153 * 271.27199 * 3 2 1 5 5 H 1.48495 * 109.47069 * 31.27115 * 3 2 1 6 6 H 1.48500 * 109.46994 * 151.27689 * 3 2 1 7 7 C 1.40306 * 120.00037 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00029 * 343.98552 * 7 2 1 9 9 C 1.40536 * 119.99727 * 164.25825 * 7 2 1 10 10 C 1.44189 * 123.71912 * 331.00523 * 9 7 2 11 11 C 1.32765 * 114.43608 * 180.02562 * 10 9 7 12 12 S 1.75475 * 111.36015 * 0.02562 * 11 10 9 13 13 C 1.39551 * 123.71314 * 150.71457 * 9 7 2 14 14 C 1.46231 * 125.22732 * 359.96262 * 13 9 7 15 15 O 1.21761 * 120.00164 * 0.94932 * 14 13 9 16 16 N 1.34779 * 119.99755 * 180.95896 * 14 13 9 17 17 C 1.47018 * 125.65024 * 355.41568 * 16 14 13 18 18 C 1.54323 * 107.27283 * 181.03031 * 17 16 14 19 19 C 1.55157 * 102.94342 * 22.19269 * 18 17 16 20 20 H 1.09005 * 111.00064 * 82.57583 * 19 18 17 21 21 F 1.39900 * 111.00483 * 206.42620 * 19 18 17 22 22 C 1.47432 * 125.64491 * 175.12068 * 16 14 13 23 23 H 0.96998 * 120.00017 * 359.97438 * 1 2 3 24 24 H 1.08003 * 122.77844 * 359.97438 * 10 9 7 25 25 H 1.07990 * 124.31902 * 179.97438 * 11 10 9 26 26 H 1.09000 * 109.88697 * 300.44794 * 17 16 14 27 27 H 1.09003 * 109.87855 * 61.61303 * 17 16 14 28 28 H 1.08996 * 110.72012 * 140.55952 * 18 17 16 29 29 H 1.09005 * 110.72045 * 263.65818 * 18 17 16 30 30 H 1.09003 * 110.36218 * 274.73427 * 22 16 14 31 31 H 1.08998 * 110.36881 * 37.06313 * 22 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2404 1.6178 0.0000 4 1 2.4609 2.0620 -1.3997 5 1 1.4515 2.6447 0.7267 6 1 3.5512 1.4326 0.6728 7 6 2.0080 -1.2151 -0.0005 8 1 1.4994 -2.1324 0.2571 9 6 3.3738 -1.2377 -0.3308 10 6 3.9980 -0.2899 -1.2202 11 6 5.2988 -0.4829 -1.4033 12 16 5.8752 -1.8639 -0.4870 13 6 4.2765 -2.1764 0.1707 14 6 3.9422 -3.2563 1.0982 15 8 2.7945 -3.3982 1.4793 16 7 4.9046 -4.0946 1.5314 17 6 6.3043 -4.0977 1.0818 18 6 7.0229 -5.2413 1.8283 19 6 5.8553 -6.1791 2.2340 20 1 5.5778 -6.8365 1.4100 21 9 6.1802 -6.9193 3.3759 22 6 4.7294 -5.1564 2.5391 23 1 -0.4850 0.8400 0.0004 24 1 3.4525 0.5101 -1.6986 25 1 5.9223 0.1312 -2.0360 26 1 6.3480 -4.2719 0.0067 27 1 6.7736 -3.1442 1.3243 28 1 7.7191 -5.7564 1.1664 29 1 7.5400 -4.8616 2.7095 30 1 4.8457 -4.7491 3.5434 31 1 3.7516 -5.6255 2.4299 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000868634044.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:37:01 Heat of formation + Delta-G solvation = -79.079583 kcal Electronic energy + Delta-G solvation = -18222.902601 eV Core-core repulsion = 15123.084672 eV Total energy + Delta-G solvation = -3099.817929 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 269.063 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -48.69786 -40.63162 -38.53323 -37.43238 -35.20813 -32.30583 -31.12852 -30.02666 -28.17816 -24.90148 -23.40358 -22.51358 -21.66536 -20.55708 -18.99265 -18.12782 -17.87306 -17.23913 -16.65286 -16.36219 -15.89155 -15.59617 -15.41675 -15.16878 -14.90015 -14.67128 -14.09969 -13.90907 -13.66046 -13.39529 -13.26289 -13.06085 -12.71817 -12.59182 -12.28090 -11.85614 -11.80333 -11.71777 -11.23413 -11.11519 -10.57077 -9.74164 -9.42358 -9.06772 -9.03511 -6.52959 0.08754 1.17051 1.22753 1.33432 1.41842 1.59597 1.68984 2.04594 2.08354 2.38495 3.12374 3.16400 3.42593 3.57501 3.85039 4.15293 4.21140 4.36070 4.43261 4.54005 4.68712 4.70467 4.84400 4.90533 4.99392 5.09847 5.20705 5.29426 5.52352 5.80462 6.17365 6.46687 6.53227 6.77660 7.54981 8.01064 Molecular weight = 269.06amu Principal moments of inertia in cm(-1) A = 0.028435 B = 0.006294 C = 0.005366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.450759 B = 4447.783464 C = 5216.941501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.819 5.819 2 C 0.040 3.960 3 Si 0.972 3.028 4 H -0.231 1.231 5 H -0.269 1.269 6 H -0.252 1.252 7 C -0.415 4.415 8 H 0.061 0.939 9 C 0.098 3.902 10 C -0.201 4.201 11 C -0.171 4.171 12 S 0.083 5.917 13 C -0.456 4.456 14 C 0.601 3.399 15 O -0.602 6.602 16 N -0.636 5.636 17 C 0.093 3.907 18 C -0.134 4.134 19 C 0.088 3.912 20 H 0.121 0.879 21 F -0.206 7.206 22 C 0.082 3.918 23 H 0.303 0.697 24 H 0.136 0.864 25 H 0.192 0.808 26 H 0.082 0.918 27 H 0.079 0.921 28 H 0.128 0.872 29 H 0.099 0.901 30 H 0.069 0.931 31 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.820 -3.048 -1.003 16.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C -0.179 4.179 3 Si 0.792 3.208 4 H -0.155 1.155 5 H -0.195 1.195 6 H -0.176 1.176 7 C -0.446 4.446 8 H 0.079 0.921 9 C 0.087 3.913 10 C -0.234 4.234 11 C -0.306 4.306 12 S 0.342 5.658 13 C -0.574 4.574 14 C 0.400 3.600 15 O -0.487 6.487 16 N -0.371 5.371 17 C -0.031 4.031 18 C -0.172 4.172 19 C 0.052 3.948 20 H 0.138 0.862 21 F -0.186 7.186 22 C -0.042 4.042 23 H 0.114 0.886 24 H 0.154 0.846 25 H 0.210 0.790 26 H 0.100 0.900 27 H 0.097 0.903 28 H 0.146 0.854 29 H 0.117 0.883 30 H 0.087 0.913 31 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 16.295 -3.697 -0.646 16.722 hybrid contribution -2.164 1.051 0.143 2.410 sum 14.132 -2.646 -0.503 14.386 Atomic orbital electron populations 1.69616 1.09798 1.32602 1.32307 1.27334 0.95596 1.05023 0.89989 0.85490 0.79325 0.74824 0.81130 1.15498 1.19500 1.17619 1.19519 0.93047 0.95870 1.36145 0.92110 1.18232 0.92443 0.90866 0.89762 1.21421 0.95939 1.02771 1.03219 1.25920 0.98227 1.02669 1.03760 1.82586 1.08843 1.27423 1.46981 1.23023 0.97627 1.14420 1.22351 1.16861 0.82988 0.80437 0.79758 1.90709 1.21651 1.74412 1.61950 1.48052 1.10785 1.34788 1.43485 1.22182 0.80331 1.00408 1.00166 1.23216 0.96888 0.94346 1.02763 1.22708 0.95076 0.91629 0.85437 0.86165 1.92804 1.93567 1.78556 1.53722 1.22676 1.00010 0.88811 0.92714 0.88561 0.84641 0.79048 0.90035 0.90314 0.85359 0.88291 0.91297 0.91581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -44.92 13.92 21.89 0.30 -44.61 16 2 C 0.04 2.14 5.49 85.37 0.47 2.60 16 3 Si 0.97 40.13 24.61 68.60 1.69 41.81 16 4 H -0.23 -8.25 6.55 99.48 0.65 -7.59 16 5 H -0.27 -10.40 7.11 99.48 0.71 -9.69 16 6 H -0.25 -10.72 6.89 99.48 0.69 -10.03 16 7 C -0.41 -24.70 8.91 23.33 0.21 -24.50 16 8 H 0.06 4.21 6.46 -2.91 -0.02 4.19 16 9 C 0.10 5.16 5.18 -20.89 -0.11 5.06 16 10 C -0.20 -8.58 7.60 22.61 0.17 -8.41 16 11 C -0.17 -5.95 11.07 66.64 0.74 -5.21 16 12 S 0.08 2.90 18.52 -56.49 -1.05 1.86 16 13 C -0.46 -22.33 6.44 24.67 0.16 -22.17 16 14 C 0.60 30.50 7.79 86.32 0.67 31.18 16 15 O -0.60 -36.49 14.77 -4.54 -0.07 -36.55 16 16 N -0.64 -24.31 3.33 -816.49 -2.71 -27.03 16 17 C 0.09 2.51 5.17 86.73 0.45 2.96 16 18 C -0.13 -2.47 6.76 31.78 0.21 -2.26 16 19 C 0.09 1.99 4.87 32.06 0.16 2.15 16 20 H 0.12 2.32 8.14 -2.38 -0.02 2.30 16 21 F -0.21 -4.93 17.23 44.97 0.78 -4.15 16 22 C 0.08 2.65 6.75 86.93 0.59 3.23 16 23 H 0.30 14.50 8.29 -92.71 -0.77 13.73 16 24 H 0.14 5.41 4.87 -2.91 -0.01 5.40 16 25 H 0.19 4.73 8.06 -2.92 -0.02 4.71 16 26 H 0.08 2.14 7.13 -2.39 -0.02 2.12 16 27 H 0.08 2.15 6.66 -2.44 -0.02 2.14 16 28 H 0.13 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.10 1.66 8.14 -2.38 -0.02 1.64 16 30 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 31 H 0.07 2.37 7.99 -2.39 -0.02 2.35 16 Total: -1.00 -72.82 270.96 3.74 -69.08 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: 1.09 Total: 14.96 kcal Atomic # 6 Polarization: -19.08 SS G_CDS: 3.71 Total: -15.36 kcal Atomic # 7 Polarization: -69.23 SS G_CDS: -2.41 Total: -71.64 kcal Atomic # 8 Polarization: -36.49 SS G_CDS: -0.07 Total: -36.55 kcal Atomic # 9 Polarization: -4.93 SS G_CDS: 0.78 Total: -4.15 kcal Atomic # 14 Polarization: 40.13 SS G_CDS: 1.69 Total: 41.81 kcal Atomic # 16 Polarization: 2.90 SS G_CDS: -1.05 Total: 1.86 kcal Total: -72.82 3.74 -69.08 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000868634044.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.002 kcal (2) G-P(sol) polarization free energy of solvation -72.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds