Wall clock time and date at job start Mon Mar 30 2020 00:38:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 115.55506 * 2 1 4 4 S 1.81390 * 109.47570 * 325.68859 * 3 2 1 5 5 O 1.42099 * 110.54602 * 291.62698 * 4 3 2 6 6 O 1.42104 * 110.54271 * 68.37664 * 4 3 2 7 7 N 1.65599 * 104.45104 * 180.02562 * 4 3 2 8 8 C 1.46503 * 120.00146 * 64.99939 * 7 4 3 9 9 C 1.50702 * 109.47144 * 164.99888 * 8 7 4 10 10 H 1.07998 * 119.99630 * 0.02562 * 9 8 7 11 11 C 1.37870 * 119.99919 * 179.97438 * 9 8 7 12 12 N 1.31511 * 120.00385 * 180.02562 * 11 9 8 13 13 Si 1.86804 * 120.00088 * 0.02562 * 11 9 8 14 14 H 1.48496 * 109.47520 * 89.99254 * 13 11 9 15 15 H 1.48498 * 109.47147 * 209.99751 * 13 11 9 16 16 H 1.48500 * 109.46828 * 329.99185 * 13 11 9 17 17 C 1.53069 * 117.51244 * 214.30110 * 2 1 3 18 18 C 1.52995 * 117.50011 * 145.68994 * 2 1 3 19 19 F 1.39905 * 117.50066 * 0.02562 * 18 2 1 20 20 F 1.39897 * 117.49662 * 215.00518 * 18 2 1 21 21 H 1.08997 * 109.47261 * 274.30732 * 1 2 3 22 22 H 1.08995 * 109.47462 * 34.31435 * 1 2 3 23 23 H 1.09005 * 109.46879 * 154.31061 * 1 2 3 24 24 H 1.09003 * 109.46779 * 85.69408 * 3 2 1 25 25 H 1.09004 * 109.46887 * 205.68815 * 3 2 1 26 26 H 0.97000 * 119.99997 * 245.00357 * 7 4 3 27 27 H 1.08993 * 109.46699 * 285.00243 * 8 7 4 28 28 H 1.09003 * 109.46644 * 45.00256 * 8 7 4 29 29 H 0.96999 * 120.00609 * 180.02562 * 12 11 9 30 30 H 1.09000 * 117.49477 * 145.03747 * 17 2 1 31 31 H 1.08999 * 117.51921 * 359.97438 * 17 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1901 1.3803 0.0000 4 16 1.1766 2.5353 -0.9640 5 8 1.2057 2.1932 -2.3429 6 8 -0.0523 2.7947 -0.2994 7 7 1.9967 3.9717 -0.8828 8 6 3.3216 4.0944 -1.4957 9 6 3.6882 5.5515 -1.6122 10 1 3.0030 6.3101 -1.2641 11 6 4.8988 5.9159 -2.1622 12 7 5.2190 7.1874 -2.2635 13 14 6.0844 4.6035 -2.7637 14 1 5.8078 4.3033 -4.1914 15 1 7.4789 5.0938 -2.6220 16 1 5.9088 3.3701 -1.9555 17 6 2.2371 -1.1215 -0.7651 18 6 2.2365 -1.1209 0.7649 19 9 1.4341 -2.0679 1.4105 20 9 3.4364 -0.8052 1.4113 21 1 -0.3633 0.0772 1.0247 22 1 -0.3634 0.8487 -0.5793 23 1 -0.3633 -0.9261 -0.4455 24 1 2.2772 1.7414 1.0248 25 1 3.1823 1.3086 -0.4455 26 1 1.5998 4.7318 -0.4294 27 1 4.0576 3.5830 -0.8754 28 1 3.3061 3.6432 -2.4879 29 1 6.0706 7.4438 -2.6508 30 1 3.1724 -0.8756 -1.2680 31 1 1.6124 -1.8596 -1.2681 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882136982.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:38:04 Heat of formation + Delta-G solvation = -164.203927 kcal Electronic energy + Delta-G solvation = -19142.548327 eV Core-core repulsion = 15608.269904 eV Total energy + Delta-G solvation = -3534.278423 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.068 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.76086 -48.43779 -38.86048 -38.20964 -37.08076 -36.53717 -34.24920 -30.76590 -29.44635 -28.96662 -24.01489 -23.68048 -21.53247 -20.36108 -19.40172 -18.83051 -18.25816 -17.54808 -17.40536 -17.08859 -16.91619 -16.39218 -15.51155 -15.15861 -15.10486 -15.01895 -14.71662 -14.65072 -14.49234 -14.31145 -14.14122 -13.53484 -13.30232 -13.14558 -12.95105 -12.82896 -12.72228 -12.36449 -12.25577 -11.84432 -11.64791 -11.60032 -10.92419 -10.78693 -10.22407 -8.32492 -6.40312 -0.79752 1.39291 1.42322 1.50340 1.75790 1.86302 1.98155 2.34259 2.63231 2.97105 3.01816 3.06161 3.24483 3.40877 3.51727 4.01497 4.16570 4.36803 4.38911 4.52211 4.57940 4.68770 4.76928 4.99486 5.02849 5.07088 5.41984 6.16599 6.24962 6.66533 7.23461 8.83387 Molecular weight = 269.07amu Principal moments of inertia in cm(-1) A = 0.024949 B = 0.005958 C = 0.005204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.012234 B = 4698.405183 C = 5379.303122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.133 4.133 3 C -0.594 4.594 4 S 2.628 3.372 5 O -0.984 6.984 6 O -0.981 6.981 7 N -1.109 6.109 8 C 0.215 3.785 9 C -0.544 4.544 10 H 0.045 0.955 11 C 0.013 3.987 12 N -0.942 5.942 13 Si 0.936 3.064 14 H -0.266 1.266 15 H -0.280 1.280 16 H -0.228 1.228 17 C -0.146 4.146 18 C 0.203 3.797 19 F -0.160 7.160 20 F -0.165 7.165 21 H 0.092 0.908 22 H 0.059 0.941 23 H 0.109 0.891 24 H 0.163 0.837 25 H 0.159 0.841 26 H 0.417 0.583 27 H 0.046 0.954 28 H 0.034 0.966 29 H 0.270 0.730 30 H 0.144 0.856 31 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.824 -19.649 5.010 20.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.136 4.136 3 C -0.724 4.724 4 S 2.722 3.278 5 O -0.974 6.974 6 O -0.971 6.971 7 N -0.868 5.868 8 C 0.090 3.910 9 C -0.583 4.583 10 H 0.063 0.937 11 C -0.186 4.186 12 N -0.581 5.581 13 Si 0.757 3.243 14 H -0.191 1.191 15 H -0.205 1.205 16 H -0.150 1.150 17 C -0.183 4.183 18 C 0.166 3.834 19 F -0.141 7.141 20 F -0.146 7.146 21 H 0.111 0.889 22 H 0.077 0.923 23 H 0.127 0.873 24 H 0.181 0.819 25 H 0.177 0.823 26 H 0.251 0.749 27 H 0.064 0.936 28 H 0.052 0.948 29 H 0.079 0.921 30 H 0.162 0.838 31 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -5.406 -19.827 4.439 21.025 hybrid contribution 1.080 0.522 0.604 1.343 sum -4.326 -19.306 5.042 20.417 Atomic orbital electron populations 1.21993 0.88865 1.05128 1.05503 1.22422 0.97182 0.89763 1.04249 1.30194 1.15994 1.08020 1.18155 1.04321 0.74243 0.74222 0.74965 1.93552 1.87117 1.84443 1.32294 1.93552 1.42018 1.84178 1.77370 1.55268 1.31546 1.28422 1.71557 1.19361 0.80641 0.97319 0.93726 1.21364 1.03482 0.91704 1.41779 0.93653 1.25869 0.99843 0.97842 0.95089 1.70027 1.24117 1.18095 1.45896 0.85891 0.77822 0.80413 0.80135 1.19145 1.20528 1.15013 1.24994 1.05212 0.98657 0.89432 1.20156 0.80358 0.92887 0.90027 1.93017 1.72344 1.64862 1.83842 1.93018 1.44989 1.92727 1.83843 0.88930 0.92272 0.87266 0.81920 0.82347 0.74885 0.93639 0.94848 0.92096 0.83758 0.82382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.07 8.99 71.98 0.65 -2.42 16 2 C -0.13 -2.66 2.48 -52.16 -0.13 -2.79 16 3 C -0.59 -13.18 5.89 71.98 0.42 -12.75 16 4 S 2.63 81.21 4.24 -56.49 -0.24 80.97 16 5 O -0.98 -36.21 17.49 -127.65 -2.23 -38.45 16 6 O -0.98 -33.03 15.93 -127.65 -2.03 -35.06 16 7 N -1.11 -40.53 5.88 -190.79 -1.12 -41.65 16 8 C 0.22 9.17 4.95 85.63 0.42 9.59 16 9 C -0.54 -29.35 9.83 25.60 0.25 -29.10 16 10 H 0.05 2.70 7.90 -2.91 -0.02 2.67 16 11 C 0.01 0.69 5.47 84.65 0.46 1.16 16 12 N -0.94 -56.30 13.96 21.44 0.30 -56.00 16 13 Si 0.94 39.95 27.47 68.60 1.88 41.83 16 14 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 15 H -0.28 -11.79 7.11 99.48 0.71 -11.09 16 16 H -0.23 -8.31 6.54 99.48 0.65 -7.66 16 17 C -0.15 -2.17 9.80 30.62 0.30 -1.87 16 18 C 0.20 3.97 5.14 30.59 0.16 4.13 16 19 F -0.16 -3.26 17.14 44.97 0.77 -2.49 16 20 F -0.17 -3.74 17.14 44.97 0.77 -2.97 16 21 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 22 H 0.06 1.38 4.58 -5.45 -0.02 1.36 16 23 H 0.11 1.51 7.90 -2.38 -0.02 1.49 16 24 H 0.16 3.08 8.14 -2.39 -0.02 3.06 16 25 H 0.16 3.05 7.90 -2.39 -0.02 3.03 16 26 H 0.42 15.02 8.50 -96.75 -0.82 14.19 16 27 H 0.05 1.71 7.20 -2.39 -0.02 1.69 16 28 H 0.03 1.43 7.12 -2.39 -0.02 1.42 16 29 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 30 H 0.14 1.77 8.05 -2.39 -0.02 1.75 16 31 H 0.16 1.48 8.05 -2.39 -0.02 1.46 16 Total: -1.00 -69.96 284.33 0.91 -69.06 By element: Atomic # 1 Polarization: 18.54 SS G_CDS: 0.27 Total: 18.81 kcal Atomic # 6 Polarization: -36.59 SS G_CDS: 2.54 Total: -34.05 kcal Atomic # 7 Polarization: -96.83 SS G_CDS: -0.82 Total: -97.65 kcal Atomic # 8 Polarization: -69.24 SS G_CDS: -4.27 Total: -73.51 kcal Atomic # 9 Polarization: -7.00 SS G_CDS: 1.54 Total: -5.46 kcal Atomic # 14 Polarization: 39.95 SS G_CDS: 1.88 Total: 41.83 kcal Atomic # 16 Polarization: 81.21 SS G_CDS: -0.24 Total: 80.97 kcal Total: -69.96 0.91 -69.06 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882136982.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.149 kcal (2) G-P(sol) polarization free energy of solvation -69.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds