Wall clock time and date at job start Mon Mar 30 2020 00:38:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53011 * 115.54741 * 2 1 4 4 S 1.81397 * 109.47059 * 325.66902 * 3 2 1 5 5 O 1.42105 * 110.54308 * 68.37591 * 4 3 2 6 6 O 1.42094 * 110.54012 * 291.62458 * 4 3 2 7 7 N 1.65603 * 104.44612 * 179.97438 * 4 3 2 8 8 C 1.46497 * 120.00071 * 65.00268 * 7 4 3 9 9 C 1.50694 * 109.47115 * 164.99705 * 8 7 4 10 10 H 1.08000 * 120.00563 * 359.97438 * 9 8 7 11 11 C 1.37885 * 119.99902 * 180.02562 * 9 8 7 12 12 N 1.31516 * 119.99913 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 119.99766 * 179.97438 * 11 9 8 14 14 H 1.48506 * 109.46985 * 179.97438 * 13 11 9 15 15 H 1.48494 * 109.47276 * 299.99832 * 13 11 9 16 16 H 1.48498 * 109.47150 * 60.00043 * 13 11 9 17 17 C 1.53001 * 117.50106 * 145.66851 * 2 1 3 18 18 C 1.53000 * 117.52210 * 214.30045 * 2 1 3 19 19 F 1.39895 * 117.49930 * 0.02562 * 18 2 1 20 20 F 1.39903 * 117.49954 * 145.03017 * 18 2 1 21 21 H 1.09000 * 109.47016 * 34.42033 * 1 2 3 22 22 H 1.09000 * 109.46421 * 154.41564 * 1 2 3 23 23 H 1.08995 * 109.47026 * 274.41218 * 1 2 3 24 24 H 1.09002 * 109.46811 * 205.66387 * 3 2 1 25 25 H 1.09000 * 109.46615 * 85.67200 * 3 2 1 26 26 H 0.97004 * 119.99630 * 244.99756 * 7 4 3 27 27 H 1.09007 * 109.47078 * 44.99344 * 8 7 4 28 28 H 1.09003 * 109.46733 * 285.00066 * 8 7 4 29 29 H 0.97001 * 119.99646 * 179.97438 * 12 11 9 30 30 H 1.09003 * 117.49971 * 215.00971 * 17 2 1 31 31 H 1.08994 * 117.50041 * 0.02562 * 17 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3805 0.0000 4 16 1.1764 2.5351 -0.9645 5 8 -0.0528 2.7944 -0.3003 6 8 1.2061 2.1927 -2.3433 7 7 1.9955 3.9720 -0.8821 8 6 3.3209 4.0957 -1.4939 9 6 3.6866 5.5530 -1.6096 10 1 3.0004 6.3113 -1.2626 11 6 4.8971 5.9184 -2.1595 12 7 5.7327 4.9951 -2.5825 13 14 5.3502 7.7249 -2.3035 14 1 6.6938 7.8504 -2.9236 15 1 4.3474 8.4209 -3.1491 16 1 5.3700 8.3396 -0.9519 17 6 2.2365 -1.1207 0.7654 18 6 2.2370 -1.1209 -0.7646 19 9 1.4350 -2.0675 -1.4110 20 9 3.4373 -0.8051 -1.4102 21 1 -0.3633 0.8477 -0.5809 22 1 -0.3632 -0.9269 -0.4438 23 1 -0.3633 0.0791 1.0246 24 1 3.1823 1.3088 -0.4451 25 1 2.2765 1.7417 1.0248 26 1 1.5977 4.7317 -0.4288 27 1 3.3066 3.6448 -2.4862 28 1 4.0567 3.5845 -0.8731 29 1 6.5841 5.2522 -2.9697 30 1 3.1713 -0.8745 1.2690 31 1 1.6113 -1.8582 1.2686 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882136983.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:38:06 Heat of formation + Delta-G solvation = -144.207059 kcal Electronic energy + Delta-G solvation = -19223.335120 eV Core-core repulsion = 15689.923826 eV Total energy + Delta-G solvation = -3533.411293 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.068 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -48.75433 -47.41774 -37.87854 -36.68415 -35.55551 -34.68853 -32.20186 -29.78075 -28.07648 -26.74944 -22.78326 -22.54513 -20.37853 -18.85138 -17.78745 -17.65538 -16.72885 -16.41188 -16.08873 -15.71048 -15.52999 -14.71457 -14.13605 -14.05849 -13.75394 -13.73327 -13.51791 -13.29552 -12.92365 -12.69303 -12.66270 -12.07929 -11.85760 -11.77204 -11.64054 -11.54035 -11.21586 -10.94211 -10.79656 -10.28171 -10.09279 -9.95663 -9.48478 -8.92644 -8.26295 -6.20426 -4.25678 0.65252 2.77343 2.86146 3.25122 3.25878 3.30371 3.34227 3.86456 3.94378 4.24254 4.32464 4.38106 4.44485 4.64947 5.05365 5.16097 5.18349 5.23444 5.34864 5.46233 5.55283 5.70556 5.89227 6.37070 7.19227 7.29175 7.76247 7.77001 8.13627 8.78241 9.39587 10.89903 Molecular weight = 269.07amu Principal moments of inertia in cm(-1) A = 0.029395 B = 0.005459 C = 0.004923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.310913 B = 5127.983426 C = 5686.650191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.115 4.115 3 C -0.613 4.613 4 S 2.616 3.384 5 O -0.973 6.973 6 O -0.952 6.952 7 N -1.106 6.106 8 C 0.241 3.759 9 C -0.532 4.532 10 H 0.066 0.934 11 C 0.061 3.939 12 N -0.890 5.890 13 Si 0.905 3.095 14 H -0.285 1.285 15 H -0.274 1.274 16 H -0.275 1.275 17 C -0.155 4.155 18 C 0.204 3.796 19 F -0.156 7.156 20 F -0.150 7.150 21 H 0.073 0.927 22 H 0.084 0.916 23 H 0.092 0.908 24 H 0.145 0.855 25 H 0.147 0.853 26 H 0.411 0.589 27 H 0.040 0.960 28 H 0.021 0.979 29 H 0.267 0.733 30 H 0.128 0.872 31 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.502 -11.295 8.415 15.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.118 4.118 3 C -0.738 4.738 4 S 2.705 3.295 5 O -0.963 6.963 6 O -0.942 6.942 7 N -0.867 5.867 8 C 0.118 3.882 9 C -0.571 4.571 10 H 0.084 0.916 11 C -0.142 4.142 12 N -0.528 5.528 13 Si 0.732 3.268 14 H -0.211 1.211 15 H -0.200 1.200 16 H -0.201 1.201 17 C -0.193 4.193 18 C 0.167 3.833 19 F -0.136 7.136 20 F -0.130 7.130 21 H 0.092 0.908 22 H 0.103 0.897 23 H 0.110 0.890 24 H 0.163 0.837 25 H 0.165 0.835 26 H 0.245 0.755 27 H 0.058 0.942 28 H 0.039 0.961 29 H 0.077 0.923 30 H 0.146 0.854 31 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -6.995 -11.669 7.724 15.645 hybrid contribution 1.056 1.004 0.289 1.485 sum -5.939 -10.666 8.013 14.603 Atomic orbital electron populations 1.21908 0.89205 1.04771 1.05165 1.22295 0.96748 0.90282 1.02468 1.30392 1.17028 1.08416 1.18001 1.04770 0.74357 0.74833 0.75502 1.93544 1.41318 1.83919 1.77499 1.93608 1.86567 1.84182 1.29801 1.55488 1.33438 1.26275 1.71517 1.19139 0.76430 0.99303 0.93333 1.21142 1.02803 0.91099 1.42070 0.91600 1.24990 0.96040 0.98318 0.94879 1.69927 1.09560 1.33064 1.40252 0.86448 0.77682 0.84173 0.78474 1.21077 1.19979 1.20071 1.24479 1.04274 0.99668 0.90906 1.20122 0.81088 0.93213 0.88834 1.93007 1.72242 1.64807 1.83583 1.93066 1.44076 1.92438 1.83439 0.90800 0.89694 0.88951 0.83701 0.83519 0.75510 0.94187 0.96129 0.92322 0.85386 0.85409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 9.31 37.16 0.35 -1.46 16 2 C -0.12 -1.45 2.48 -154.50 -0.38 -1.84 16 3 C -0.61 -8.49 6.21 37.16 0.23 -8.26 16 4 S 2.62 46.67 4.24 -107.50 -0.46 46.22 16 5 O -0.97 -17.62 15.93 -57.54 -0.92 -18.54 16 6 O -0.95 -20.80 17.50 -57.54 -1.01 -21.81 16 7 N -1.11 -21.96 5.88 -11.66 -0.07 -22.02 16 8 C 0.24 5.90 5.88 -5.20 -0.03 5.87 16 9 C -0.53 -14.18 9.27 -34.44 -0.32 -14.50 16 10 H 0.07 1.67 7.65 -52.49 -0.40 1.27 16 11 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 12 N -0.89 -25.33 13.29 55.43 0.74 -24.59 16 13 Si 0.91 20.69 29.54 -169.99 -5.02 15.66 16 14 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 15 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 16 H -0.28 -6.13 7.11 56.52 0.40 -5.72 16 17 C -0.15 -1.45 9.94 -26.73 -0.27 -1.72 16 18 C 0.20 2.75 5.14 -26.73 -0.14 2.61 16 19 F -0.16 -2.14 16.50 2.25 0.04 -2.10 16 20 F -0.15 -2.37 16.50 2.25 0.04 -2.34 16 21 H 0.07 1.03 4.58 -47.15 -0.22 0.81 16 22 H 0.08 0.87 7.10 -51.93 -0.37 0.50 16 23 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 24 H 0.14 2.10 7.10 -51.92 -0.37 1.73 16 25 H 0.15 1.58 8.14 -51.92 -0.42 1.16 16 26 H 0.41 7.49 8.50 -34.47 -0.29 7.20 16 27 H 0.04 1.08 7.70 -51.92 -0.40 0.68 16 28 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 30 H 0.13 1.02 8.14 -51.93 -0.42 0.59 16 31 H 0.13 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 286.04 15.07 4.31 4.31 Total: -1.00 -32.53 286.04 -6.30 -38.83 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: -3.30 Total: 4.10 kcal Atomic # 6 Polarization: -17.07 SS G_CDS: -0.66 Total: -17.73 kcal Atomic # 7 Polarization: -47.28 SS G_CDS: 0.67 Total: -46.62 kcal Atomic # 8 Polarization: -38.42 SS G_CDS: -1.92 Total: -40.35 kcal Atomic # 9 Polarization: -4.51 SS G_CDS: 0.07 Total: -4.43 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.66 kcal Atomic # 16 Polarization: 46.67 SS G_CDS: -0.46 Total: 46.22 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -32.53 -6.30 -38.83 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882136983.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.373 kcal (2) G-P(sol) polarization free energy of solvation -32.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds