Wall clock time and date at job start Mon Mar 30 2020 00:34:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86799 * 119.99873 * 2 1 4 4 H 1.48505 * 109.47034 * 274.99902 * 3 2 1 5 5 H 1.48502 * 109.47451 * 34.99100 * 3 2 1 6 6 H 1.48491 * 109.47224 * 154.99788 * 3 2 1 7 7 C 1.37874 * 119.99842 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99416 * 184.96233 * 7 2 1 9 9 C 1.50696 * 120.00174 * 4.96708 * 7 2 1 10 10 O 1.42903 * 110.27342 * 296.92010 * 9 7 2 11 11 C 1.54600 * 110.39432 * 59.06727 * 9 7 2 12 12 C 1.54942 * 102.91883 * 140.91696 * 11 9 7 13 13 N 1.48533 * 103.22871 * 322.58613 * 12 11 9 14 14 C 1.39050 * 111.00068 * 159.71883 * 13 12 11 15 15 N 1.32621 * 120.10590 * 242.58367 * 14 13 12 16 16 C 1.32259 * 119.92587 * 179.75624 * 15 14 13 17 17 C 1.38131 * 120.13912 * 0.52424 * 16 15 14 18 18 N 1.32291 * 120.20540 * 359.47106 * 17 16 15 19 19 C 1.32021 * 120.06685 * 0.26347 * 18 17 16 20 20 Cl 1.73599 * 120.06543 * 179.97438 * 19 18 17 21 21 C 1.47909 * 105.81958 * 39.20817 * 13 12 11 22 22 H 0.96997 * 119.99540 * 0.02562 * 1 2 3 23 23 H 0.96698 * 113.99564 * 57.91327 * 10 9 7 24 24 H 1.08991 * 110.72224 * 259.27426 * 11 9 7 25 25 H 1.08996 * 110.72131 * 22.38555 * 11 9 7 26 26 H 1.08994 * 110.66337 * 204.15224 * 12 11 9 27 27 H 1.08999 * 110.66783 * 81.02354 * 12 11 9 28 28 H 1.08009 * 119.93208 * 180.27398 * 16 15 14 29 29 H 1.08003 * 119.90110 * 179.75496 * 17 16 15 30 30 H 1.08995 * 109.91455 * 94.02258 * 21 13 12 31 31 H 1.08998 * 109.91544 * 215.31517 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3910 2.1074 -1.3948 5 1 1.5034 2.6200 0.8029 6 1 3.5955 1.4121 0.5917 7 6 2.0046 -1.1940 0.0005 8 1 3.0816 -1.1957 0.0814 9 6 1.2553 -2.4967 -0.1119 10 8 0.3949 -2.6719 1.0156 11 6 0.4368 -2.5360 -1.4228 12 6 0.6050 -4.0030 -1.8923 13 7 2.0110 -4.3167 -1.5303 14 6 2.2112 -5.6906 -1.4540 15 7 2.5634 -6.2486 -0.3036 16 6 2.7483 -7.5563 -0.2339 17 6 2.5859 -8.3407 -1.3593 18 7 2.2346 -7.7897 -2.5095 19 6 2.0429 -6.4858 -2.5871 20 17 1.5825 -5.7628 -4.0967 21 6 2.2427 -3.6736 -0.2186 22 1 -0.4849 0.8401 -0.0004 23 1 -0.2489 -1.9602 1.1332 24 1 -0.6119 -2.3107 -1.2296 25 1 0.8499 -1.8437 -2.1563 26 1 0.4585 -4.0813 -2.9695 27 1 -0.0846 -4.6586 -1.3606 28 1 3.0308 -8.0115 0.7040 29 1 2.7417 -9.4077 -1.2989 30 1 2.0568 -4.3882 0.5832 31 1 3.2670 -3.3054 -0.1614 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894350964.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:34:22 Heat of formation + Delta-G solvation = 14.213931 kcal Electronic energy + Delta-G solvation = -18642.318806 eV Core-core repulsion = 15564.422643 eV Total energy + Delta-G solvation = -3077.896164 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 269.067 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.20920 -38.49570 -36.65209 -35.28308 -33.80197 -32.16277 -31.26900 -28.59130 -28.31256 -25.36263 -24.11978 -23.30749 -20.96670 -19.59142 -17.64701 -17.45118 -17.11280 -16.79044 -15.32410 -14.90467 -14.81686 -14.40607 -13.99657 -13.48089 -13.25102 -12.63782 -12.32884 -12.00118 -11.75390 -11.59470 -11.35654 -11.32411 -11.11574 -10.91109 -10.75429 -10.46728 -10.35151 -10.07449 -9.49274 -9.20380 -9.10047 -8.61382 -8.19502 -7.98273 -6.24966 -4.31111 0.69974 1.07274 1.82884 3.22166 3.29963 3.34021 3.50611 3.79840 4.23301 4.31688 4.32310 4.80216 5.03352 5.07888 5.13451 5.48826 5.72263 5.90436 6.01287 6.06201 6.25387 6.54565 6.75348 6.82118 6.91138 7.16298 7.34949 7.41992 7.48125 7.75964 7.77487 8.09121 8.71238 9.34678 9.46298 10.82852 Molecular weight = 269.07amu Principal moments of inertia in cm(-1) A = 0.030441 B = 0.005780 C = 0.005347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.584005 B = 4842.872433 C = 5234.887450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.070 3.930 3 Si 0.901 3.099 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.530 4.530 8 H 0.063 0.937 9 C 0.243 3.757 10 O -0.592 6.592 11 C -0.117 4.117 12 C 0.034 3.966 13 N -0.447 5.447 14 C 0.295 3.705 15 N -0.460 5.460 16 C 0.083 3.917 17 C 0.016 3.984 18 N -0.417 5.417 19 C 0.105 3.895 20 Cl -0.009 7.009 21 C 0.053 3.947 22 H 0.267 0.733 23 H 0.384 0.616 24 H 0.075 0.925 25 H 0.074 0.926 26 H 0.086 0.914 27 H 0.046 0.954 28 H 0.175 0.825 29 H 0.173 0.827 30 H 0.077 0.923 31 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.888 -12.175 -3.425 12.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.132 4.132 3 Si 0.728 3.272 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.568 4.568 8 H 0.082 0.918 9 C 0.203 3.797 10 O -0.401 6.401 11 C -0.156 4.156 12 C -0.090 4.090 13 N -0.163 5.163 14 C 0.058 3.942 15 N -0.180 5.180 16 C -0.078 4.078 17 C -0.144 4.144 18 N -0.133 5.133 19 C -0.068 4.068 20 Cl 0.019 6.981 21 C -0.072 4.072 22 H 0.077 0.923 23 H 0.234 0.766 24 H 0.094 0.906 25 H 0.093 0.907 26 H 0.104 0.896 27 H 0.065 0.935 28 H 0.192 0.808 29 H 0.191 0.809 30 H 0.095 0.905 31 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 2.387 -12.239 -3.879 13.060 hybrid contribution -0.240 1.107 0.197 1.150 sum 2.147 -11.132 -3.682 11.920 Atomic orbital electron populations 1.69677 1.05961 1.27541 1.50530 1.25008 0.94993 0.99501 0.93730 0.86433 0.79961 0.82680 0.78089 1.20525 1.21130 1.19728 1.21650 0.93891 0.90404 1.50898 0.91837 1.19358 0.86232 0.91232 0.82868 1.86112 1.51886 1.51805 1.50325 1.23058 1.01667 0.90817 1.00084 1.23632 0.83958 1.00044 1.01360 1.61819 1.23422 1.01277 1.29791 1.20899 0.93147 0.92141 0.87980 1.68688 1.13473 1.12371 1.23484 1.23759 0.94395 0.89447 1.00220 1.23430 1.01074 1.01803 0.88119 1.67651 1.08087 1.09951 1.27635 1.22150 1.04986 0.90528 0.89127 1.98390 1.89808 1.80328 1.29575 1.22978 1.01105 0.96382 0.86772 0.92278 0.76562 0.90648 0.90704 0.89585 0.93526 0.80846 0.80948 0.90485 0.89619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.35 10.90 55.43 0.60 -22.74 16 2 C 0.07 1.81 5.22 -17.82 -0.09 1.72 16 3 Si 0.90 20.43 29.54 -169.99 -5.02 15.41 16 4 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 6 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 7 C -0.53 -13.97 8.12 -34.44 -0.28 -14.25 16 8 H 0.06 1.68 7.36 -52.49 -0.39 1.30 16 9 C 0.24 5.93 0.99 -90.42 -0.09 5.84 16 10 O -0.59 -15.11 12.93 -35.23 -0.46 -15.57 16 11 C -0.12 -2.64 5.32 -24.87 -0.13 -2.77 16 12 C 0.03 0.67 5.67 -1.90 -0.01 0.66 16 13 N -0.45 -8.90 5.02 -169.05 -0.85 -9.75 16 14 C 0.30 5.35 6.21 -154.67 -0.96 4.39 16 15 N -0.46 -7.80 8.33 -12.21 -0.10 -7.90 16 16 C 0.08 1.03 11.21 -17.41 -0.20 0.83 16 17 C 0.02 0.18 11.21 -17.39 -0.19 -0.01 16 18 N -0.42 -6.21 10.48 -10.01 -0.10 -6.31 16 19 C 0.10 1.74 7.13 -17.02 -0.12 1.62 16 20 Cl -0.01 -0.14 25.98 -51.86 -1.35 -1.49 16 21 C 0.05 1.18 5.84 -2.75 -0.02 1.17 16 22 H 0.27 6.67 8.31 -40.82 -0.34 6.34 16 23 H 0.38 9.87 7.29 45.56 0.33 10.21 16 24 H 0.07 1.74 7.99 -51.93 -0.41 1.32 16 25 H 0.07 1.76 7.86 -51.93 -0.41 1.36 16 26 H 0.09 1.51 5.88 -51.93 -0.31 1.20 16 27 H 0.05 0.90 8.00 -51.93 -0.42 0.49 16 28 H 0.17 1.42 8.06 -52.48 -0.42 1.00 16 29 H 0.17 1.26 8.06 -52.48 -0.42 0.84 16 30 H 0.08 1.73 6.34 -51.93 -0.33 1.40 16 31 H 0.09 1.93 7.39 -51.93 -0.38 1.54 16 LS Contribution 273.93 15.07 4.13 4.13 Total: -1.00 -28.27 273.93 -7.53 -35.81 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: -2.29 Total: 9.25 kcal Atomic # 6 Polarization: 1.28 SS G_CDS: -2.09 Total: -0.81 kcal Atomic # 7 Polarization: -46.26 SS G_CDS: -0.45 Total: -46.71 kcal Atomic # 8 Polarization: -15.11 SS G_CDS: -0.46 Total: -15.57 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Atomic # 17 Polarization: -0.14 SS G_CDS: -1.35 Total: -1.49 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -28.27 -7.53 -35.81 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894350964.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.019 kcal (2) G-P(sol) polarization free energy of solvation -28.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.805 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds