Wall clock time and date at job start Mon Mar 30 2020 01:05:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46502 * 119.99377 * 2 1 4 4 C 1.50703 * 109.47057 * 269.99419 * 3 2 1 5 5 H 1.07999 * 119.99641 * 0.02562 * 4 3 2 6 6 C 1.37879 * 120.00070 * 180.02562 * 4 3 2 7 7 N 1.31513 * 119.99857 * 0.02562 * 6 4 3 8 8 Si 1.86793 * 119.99777 * 180.02562 * 6 4 3 9 9 H 1.48500 * 109.47383 * 60.00327 * 8 6 4 10 10 H 1.48502 * 109.47238 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.47642 * 299.99989 * 8 6 4 12 12 C 1.34775 * 120.00044 * 179.97438 * 2 1 3 13 13 O 1.21590 * 119.99505 * 180.02562 * 12 2 1 14 14 N 1.34768 * 120.00192 * 0.02562 * 12 2 1 15 15 C 1.39977 * 120.00254 * 184.64085 * 14 12 2 16 16 C 1.38884 * 120.48113 * 145.03879 * 15 14 12 17 17 N 1.31794 * 120.68976 * 180.02562 * 16 15 14 18 18 C 1.31879 * 121.80769 * 359.97438 * 17 16 15 19 19 C 1.38354 * 120.89689 * 0.02562 * 18 17 16 20 20 Cl 1.73599 * 120.38825 * 180.02562 * 19 18 17 21 21 C 1.38657 * 119.21484 * 0.02562 * 19 18 17 22 22 H 1.08997 * 109.47329 * 270.00368 * 1 2 3 23 23 H 1.08995 * 109.47355 * 30.00805 * 1 2 3 24 24 H 1.09003 * 109.47016 * 150.00544 * 1 2 3 25 25 H 1.08994 * 109.47659 * 30.00122 * 3 2 1 26 26 H 1.09003 * 109.46872 * 150.00276 * 3 2 1 27 27 H 0.97005 * 119.99620 * 179.97438 * 7 6 4 28 28 H 0.97007 * 120.00021 * 4.64136 * 14 12 2 29 29 H 1.08000 * 119.65762 * 359.97438 * 16 15 14 30 30 H 1.07995 * 119.54628 * 179.97438 * 18 17 16 31 31 H 1.07994 * 120.82291 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0975 1.0961 -2.2417 6 6 3.1268 2.8776 -1.6728 7 7 3.5548 3.6173 -0.6732 8 14 3.4375 3.4170 -3.4340 9 1 2.1397 3.5953 -4.1334 10 1 4.1811 4.7025 -3.4341 11 1 4.2394 2.3819 -4.1347 12 6 2.1389 -1.1672 0.0005 13 8 3.3548 -1.1671 0.0010 14 7 1.4651 -2.3343 0.0005 15 6 2.1615 -3.5446 0.0991 16 6 1.6156 -4.6170 0.7924 17 7 2.2679 -5.7582 0.8883 18 6 3.4532 -5.9298 0.3362 19 6 4.0624 -4.9082 -0.3706 20 17 5.6227 -5.1488 -1.0925 21 6 3.4118 -3.6901 -0.4954 22 1 -0.3634 0.0001 1.0276 23 1 -0.3634 0.8899 -0.5139 24 1 -0.3633 -0.8901 -0.5138 25 1 1.6084 2.0284 0.5138 26 1 3.1499 1.1385 0.5138 27 1 4.0322 4.4429 -0.8505 28 1 0.4975 -2.3358 -0.0678 29 1 0.6468 -4.5146 1.2586 30 1 3.9555 -6.8804 0.4380 31 1 3.8631 -2.8752 -1.0417 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932117709.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:47 Heat of formation + Delta-G solvation = 12.437423 kcal Electronic energy + Delta-G solvation = -17845.574410 eV Core-core repulsion = 14767.601211 eV Total energy + Delta-G solvation = -3077.973199 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 269.067 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.76805 -39.23966 -36.65277 -35.37634 -34.69686 -32.68474 -31.82402 -29.96543 -27.78014 -25.97527 -24.09769 -23.57011 -22.34455 -19.74671 -18.28211 -17.17144 -16.93650 -16.61466 -16.25158 -15.27396 -14.92286 -14.63229 -14.24980 -13.99174 -13.25729 -13.16451 -12.89739 -12.57644 -12.24149 -12.08039 -12.01009 -11.28780 -11.26865 -10.98335 -10.73463 -10.62981 -10.22994 -9.95900 -9.74647 -9.47268 -9.15020 -8.49082 -8.35165 -7.77090 -6.10183 -4.15570 0.84990 1.16407 1.99715 2.93003 3.28297 3.33409 3.36072 3.46531 3.81097 4.24667 4.39184 4.43742 4.70809 4.89654 5.07425 5.14726 5.24284 5.38093 5.73574 5.84457 6.02556 6.10054 6.15347 6.59112 6.76856 7.21868 7.36294 7.50703 7.73945 7.86094 8.14698 8.38478 8.83327 9.03968 9.49858 10.97745 Molecular weight = 269.07amu Principal moments of inertia in cm(-1) A = 0.021565 B = 0.005036 C = 0.004296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.101865 B = 5558.402304 C = 6515.731419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.608 5.608 3 C 0.259 3.741 4 C -0.531 4.531 5 H 0.057 0.943 6 C 0.063 3.937 7 N -0.894 5.894 8 Si 0.899 3.101 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.276 1.276 12 C 0.696 3.304 13 O -0.566 6.566 14 N -0.690 5.690 15 C 0.147 3.853 16 C 0.066 3.934 17 N -0.451 5.451 18 C 0.080 3.920 19 C -0.066 4.066 20 Cl -0.055 7.055 21 C -0.074 4.074 22 H 0.048 0.952 23 H 0.081 0.919 24 H 0.050 0.950 25 H 0.036 0.964 26 H 0.046 0.954 27 H 0.265 0.735 28 H 0.407 0.593 29 H 0.162 0.838 30 H 0.163 0.837 31 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.632 -15.427 1.596 16.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.343 5.343 3 C 0.140 3.860 4 C -0.570 4.570 5 H 0.075 0.925 6 C -0.140 4.140 7 N -0.532 5.532 8 Si 0.726 3.274 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.202 1.202 12 C 0.398 3.602 13 O -0.442 6.442 14 N -0.341 5.341 15 C 0.047 3.953 16 C -0.094 4.094 17 N -0.159 5.159 18 C -0.079 4.079 19 C -0.095 4.095 20 Cl -0.027 7.027 21 C -0.103 4.103 22 H 0.066 0.934 23 H 0.100 0.900 24 H 0.069 0.931 25 H 0.054 0.946 26 H 0.064 0.936 27 H 0.074 0.926 28 H 0.245 0.755 29 H 0.179 0.821 30 H 0.180 0.820 31 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -4.916 -15.777 2.055 16.652 hybrid contribution 0.157 1.179 -1.559 1.961 sum -4.758 -14.598 0.496 15.362 Atomic orbital electron populations 1.21633 0.81414 1.02536 1.00637 1.47532 1.05900 1.06208 1.74615 1.19300 0.92424 0.76635 0.97641 1.21385 1.36933 1.06427 0.92211 0.92511 1.24920 0.95229 0.96316 0.97488 1.69917 1.38079 1.14397 1.30834 0.86548 0.78373 0.77885 0.84551 1.20248 1.21110 1.20169 1.15951 0.85591 0.80051 0.78646 1.90908 1.11280 1.85367 1.56629 1.42933 1.10249 1.03214 1.77677 1.18531 0.93540 0.86962 0.96293 1.22657 1.01139 0.88515 0.97110 1.67746 1.07394 1.22928 1.17846 1.22607 0.91603 0.98468 0.95244 1.21988 0.89876 0.96220 1.01447 1.98379 1.25604 1.96800 1.81891 1.21884 0.94403 0.96626 0.97373 0.93367 0.90043 0.93113 0.94579 0.93572 0.92555 0.75516 0.82071 0.82009 0.81599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.16 10.24 59.85 0.61 1.77 16 2 N -0.61 -12.18 2.86 -188.74 -0.54 -12.72 16 3 C 0.26 6.53 5.16 -5.19 -0.03 6.50 16 4 C -0.53 -14.60 9.39 -34.44 -0.32 -14.93 16 5 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 6 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 7 N -0.89 -26.02 13.29 55.43 0.74 -25.29 16 8 Si 0.90 21.47 29.54 -169.99 -5.02 16.45 16 9 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 10 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 11 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 12 C 0.70 13.93 8.14 -86.93 -0.71 13.22 16 13 O -0.57 -13.73 13.40 5.29 0.07 -13.66 16 14 N -0.69 -10.14 5.23 -14.13 -0.07 -10.21 16 15 C 0.15 2.12 6.32 -83.54 -0.53 1.59 16 16 C 0.07 0.81 11.12 -17.33 -0.19 0.61 16 17 N -0.45 -5.78 10.35 -13.06 -0.14 -5.91 16 18 C 0.08 0.98 10.98 -17.49 -0.19 0.78 16 19 C -0.07 -0.91 6.34 -39.38 -0.25 -1.16 16 20 Cl -0.06 -0.72 28.99 -51.86 -1.50 -2.22 16 21 C -0.07 -1.18 8.61 -39.07 -0.34 -1.52 16 22 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 23 H 0.08 1.20 8.07 -51.93 -0.42 0.78 16 24 H 0.05 0.55 6.30 -51.93 -0.33 0.22 16 25 H 0.04 0.91 8.07 -51.93 -0.42 0.49 16 26 H 0.05 1.32 7.42 -51.93 -0.39 0.94 16 27 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 28 H 0.41 4.44 6.52 -40.82 -0.27 4.18 16 29 H 0.16 1.43 8.06 -52.49 -0.42 1.01 16 30 H 0.16 1.54 8.06 -52.49 -0.42 1.11 16 31 H 0.17 3.12 6.32 -52.49 -0.33 2.79 16 LS Contribution 289.81 15.07 4.37 4.37 Total: -1.00 -32.34 289.81 -7.10 -39.44 By element: Atomic # 1 Polarization: 4.17 SS G_CDS: -2.96 Total: 1.20 kcal Atomic # 6 Polarization: 10.59 SS G_CDS: -2.04 Total: 8.55 kcal Atomic # 7 Polarization: -54.12 SS G_CDS: -0.01 Total: -54.13 kcal Atomic # 8 Polarization: -13.73 SS G_CDS: 0.07 Total: -13.66 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 17 Polarization: -0.72 SS G_CDS: -1.50 Total: -2.22 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -32.34 -7.10 -39.44 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932117709.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.875 kcal (2) G-P(sol) polarization free energy of solvation -32.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.437 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds