Wall clock time and date at job start Mon Mar 30 2020 01:05:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46502 * 119.99377 * 2 1 4 4 C 1.50703 * 109.47057 * 269.99419 * 3 2 1 5 5 H 1.07999 * 119.99641 * 0.02562 * 4 3 2 6 6 C 1.37879 * 120.00070 * 180.02562 * 4 3 2 7 7 N 1.31513 * 119.99857 * 0.02562 * 6 4 3 8 8 Si 1.86793 * 119.99777 * 180.02562 * 6 4 3 9 9 H 1.48500 * 109.47383 * 60.00327 * 8 6 4 10 10 H 1.48502 * 109.47238 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.47642 * 299.99989 * 8 6 4 12 12 C 1.34775 * 120.00044 * 179.97438 * 2 1 3 13 13 O 1.21590 * 119.99505 * 180.02562 * 12 2 1 14 14 N 1.34768 * 120.00192 * 0.02562 * 12 2 1 15 15 C 1.39977 * 120.00254 * 184.64085 * 14 12 2 16 16 C 1.38884 * 120.48113 * 145.03879 * 15 14 12 17 17 N 1.31794 * 120.68976 * 180.02562 * 16 15 14 18 18 C 1.31879 * 121.80769 * 359.97438 * 17 16 15 19 19 C 1.38354 * 120.89689 * 0.02562 * 18 17 16 20 20 Cl 1.73599 * 120.38825 * 180.02562 * 19 18 17 21 21 C 1.38657 * 119.21484 * 0.02562 * 19 18 17 22 22 H 1.08997 * 109.47329 * 270.00368 * 1 2 3 23 23 H 1.08995 * 109.47355 * 30.00805 * 1 2 3 24 24 H 1.09003 * 109.47016 * 150.00544 * 1 2 3 25 25 H 1.08994 * 109.47659 * 30.00122 * 3 2 1 26 26 H 1.09003 * 109.46872 * 150.00276 * 3 2 1 27 27 H 0.97005 * 119.99620 * 179.97438 * 7 6 4 28 28 H 0.97007 * 120.00021 * 4.64136 * 14 12 2 29 29 H 1.08000 * 119.65762 * 359.97438 * 16 15 14 30 30 H 1.07995 * 119.54628 * 179.97438 * 18 17 16 31 31 H 1.07994 * 120.82291 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0975 1.0961 -2.2417 6 6 3.1268 2.8776 -1.6728 7 7 3.5548 3.6173 -0.6732 8 14 3.4375 3.4170 -3.4340 9 1 2.1397 3.5953 -4.1334 10 1 4.1811 4.7025 -3.4341 11 1 4.2394 2.3819 -4.1347 12 6 2.1389 -1.1672 0.0005 13 8 3.3548 -1.1671 0.0010 14 7 1.4651 -2.3343 0.0005 15 6 2.1615 -3.5446 0.0991 16 6 1.6156 -4.6170 0.7924 17 7 2.2679 -5.7582 0.8883 18 6 3.4532 -5.9298 0.3362 19 6 4.0624 -4.9082 -0.3706 20 17 5.6227 -5.1488 -1.0925 21 6 3.4118 -3.6901 -0.4954 22 1 -0.3634 0.0001 1.0276 23 1 -0.3634 0.8899 -0.5139 24 1 -0.3633 -0.8901 -0.5138 25 1 1.6084 2.0284 0.5138 26 1 3.1499 1.1385 0.5138 27 1 4.0322 4.4429 -0.8505 28 1 0.4975 -2.3358 -0.0678 29 1 0.6468 -4.5146 1.2586 30 1 3.9555 -6.8804 0.4380 31 1 3.8631 -2.8752 -1.0417 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932117709.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:47 Heat of formation + Delta-G solvation = -9.620486 kcal Electronic energy + Delta-G solvation = -17846.530912 eV Core-core repulsion = 14767.601211 eV Total energy + Delta-G solvation = -3078.929702 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 269.067 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.00831 -40.56438 -37.70915 -36.90519 -36.16223 -34.69899 -32.94305 -31.21389 -29.52526 -27.41530 -25.57016 -24.82244 -23.81666 -21.18930 -19.60590 -18.70409 -18.46079 -17.99756 -17.44848 -16.89358 -16.48476 -16.09627 -15.46441 -15.37320 -14.82258 -14.48891 -14.28681 -13.89391 -13.58989 -13.48198 -13.17338 -13.11520 -12.81956 -12.54960 -12.35917 -12.19884 -11.95491 -11.73383 -11.36048 -10.73365 -10.63883 -10.34526 -9.67769 -9.25232 -8.22224 -6.36845 -0.18427 0.03192 0.94674 1.37024 1.40885 1.47545 1.58542 2.06416 2.38179 2.64500 2.95456 3.08181 3.48133 3.69412 3.78635 3.93496 4.18413 4.30614 4.65832 4.78402 4.88284 4.93804 4.96101 5.07315 5.21218 5.51812 5.59838 5.73470 5.97702 6.04761 6.71347 6.71917 6.95885 7.29677 7.53183 8.84201 Molecular weight = 269.07amu Principal moments of inertia in cm(-1) A = 0.021565 B = 0.005036 C = 0.004296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.101865 B = 5558.402304 C = 6515.731419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.616 5.616 3 C 0.275 3.725 4 C -0.544 4.544 5 H 0.053 0.947 6 C 0.011 3.989 7 N -0.927 5.927 8 Si 0.964 3.036 9 H -0.260 1.260 10 H -0.279 1.279 11 H -0.280 1.280 12 C 0.692 3.308 13 O -0.619 6.619 14 N -0.666 5.666 15 C 0.127 3.873 16 C 0.089 3.911 17 N -0.456 5.456 18 C 0.093 3.907 19 C -0.073 4.073 20 Cl -0.053 7.053 21 C -0.096 4.096 22 H 0.076 0.924 23 H 0.074 0.926 24 H 0.089 0.911 25 H 0.032 0.968 26 H 0.000 1.000 27 H 0.267 0.733 28 H 0.427 0.573 29 H 0.202 0.798 30 H 0.192 0.808 31 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.523 -17.127 1.340 18.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.350 5.350 3 C 0.153 3.847 4 C -0.582 4.582 5 H 0.071 0.929 6 C -0.189 4.189 7 N -0.567 5.567 8 Si 0.789 3.211 9 H -0.184 1.184 10 H -0.204 1.204 11 H -0.206 1.206 12 C 0.394 3.606 13 O -0.498 6.498 14 N -0.319 5.319 15 C 0.028 3.972 16 C -0.071 4.071 17 N -0.164 5.164 18 C -0.065 4.065 19 C -0.103 4.103 20 Cl -0.025 7.025 21 C -0.125 4.125 22 H 0.094 0.906 23 H 0.092 0.908 24 H 0.108 0.892 25 H 0.050 0.950 26 H 0.018 0.982 27 H 0.076 0.924 28 H 0.269 0.731 29 H 0.218 0.782 30 H 0.209 0.791 31 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -6.886 -17.529 1.798 18.919 hybrid contribution 0.744 1.606 -1.429 2.275 sum -6.141 -15.924 0.369 17.071 Atomic orbital electron populations 1.21959 0.77573 1.04152 1.02985 1.47367 1.08177 1.04673 1.74759 1.18730 0.91018 0.78897 0.96013 1.21676 1.36941 1.06509 0.93097 0.92887 1.25795 0.94915 0.96450 1.01707 1.70034 1.38788 1.14849 1.32981 0.85518 0.78828 0.77304 0.79451 1.18410 1.20410 1.20619 1.16115 0.85080 0.81180 0.78247 1.90879 1.13858 1.86356 1.58747 1.42466 1.10961 1.01664 1.76789 1.18704 0.93479 0.87383 0.97637 1.23179 1.01928 0.86970 0.95035 1.67903 1.07566 1.22960 1.17992 1.23071 0.91237 0.98874 0.93349 1.22043 0.90139 0.95976 1.02136 1.98376 1.25440 1.96714 1.81925 1.21736 0.95708 0.96646 0.98412 0.90574 0.90759 0.89229 0.95033 0.98165 0.92384 0.73086 0.78160 0.79069 0.85211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.97 10.24 127.77 1.31 3.27 16 2 N -0.62 -24.74 2.86 -869.31 -2.48 -27.23 16 3 C 0.27 14.36 5.16 85.63 0.44 14.81 16 4 C -0.54 -30.59 9.39 25.60 0.24 -30.35 16 5 H 0.05 2.95 7.81 -2.91 -0.02 2.93 16 6 C 0.01 0.60 5.46 84.66 0.46 1.06 16 7 N -0.93 -55.26 13.29 21.45 0.28 -54.97 16 8 Si 0.96 44.35 29.54 68.60 2.03 46.38 16 9 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 10 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 11 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 12 C 0.69 28.00 8.14 179.06 1.46 29.45 16 13 O -0.62 -31.49 13.40 -4.00 -0.05 -31.55 16 14 N -0.67 -18.58 5.23 -316.88 -1.66 -20.24 16 15 C 0.13 3.50 6.32 38.23 0.24 3.74 16 16 C 0.09 1.87 11.12 84.85 0.94 2.82 16 17 N -0.46 -10.21 10.35 -195.23 -2.02 -12.23 16 18 C 0.09 2.05 10.98 84.71 0.93 2.98 16 19 C -0.07 -1.97 6.34 22.40 0.14 -1.83 16 20 Cl -0.05 -1.36 28.99 -2.72 -0.08 -1.44 16 21 C -0.10 -3.10 8.61 22.60 0.19 -2.91 16 22 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 23 H 0.07 2.07 8.07 -2.39 -0.02 2.05 16 24 H 0.09 1.61 6.30 -2.39 -0.02 1.60 16 25 H 0.03 1.65 8.07 -2.39 -0.02 1.64 16 26 H 0.00 0.01 7.42 -2.39 -0.02 -0.01 16 27 H 0.27 15.01 8.31 -92.70 -0.77 14.24 16 28 H 0.43 7.96 6.52 -92.70 -0.60 7.35 16 29 H 0.20 2.54 8.06 -2.91 -0.02 2.52 16 30 H 0.19 3.00 8.06 -2.91 -0.02 2.98 16 31 H 0.13 5.20 6.32 -2.91 -0.02 5.19 16 Total: -1.00 -73.59 289.81 2.95 -70.65 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: 0.57 Total: 7.58 kcal Atomic # 6 Polarization: 16.68 SS G_CDS: 6.36 Total: 23.04 kcal Atomic # 7 Polarization: -108.79 SS G_CDS: -5.88 Total: -114.66 kcal Atomic # 8 Polarization: -31.49 SS G_CDS: -0.05 Total: -31.55 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Atomic # 17 Polarization: -1.36 SS G_CDS: -0.08 Total: -1.44 kcal Total: -73.59 2.95 -70.65 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932117709.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.028 kcal (2) G-P(sol) polarization free energy of solvation -73.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds