Wall clock time and date at job start Mon Mar 30 2020 01:38:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38255 * 120.00219 * 2 1 4 4 C 1.38212 * 120.00284 * 180.02562 * 3 2 1 5 5 C 1.38253 * 119.99859 * 0.02562 * 4 3 2 6 6 C 1.38215 * 120.00294 * 359.97438 * 5 4 3 7 7 C 1.50702 * 120.00248 * 179.70563 * 6 5 4 8 8 H 1.08996 * 109.46956 * 200.00252 * 7 6 5 9 9 C 1.52998 * 109.47165 * 79.99757 * 7 6 5 10 10 N 1.46500 * 109.46769 * 319.99633 * 7 6 5 11 11 S 1.65598 * 119.99794 * 215.00056 * 10 7 6 12 12 O 1.42111 * 106.40039 * 178.54320 * 11 10 7 13 13 O 1.42098 * 106.40493 * 311.45972 * 11 10 7 14 14 C 1.76202 * 107.21801 * 65.00417 * 11 10 7 15 15 H 1.07992 * 119.99996 * 359.97438 * 14 11 10 16 16 C 1.37881 * 119.99819 * 179.97438 * 14 11 10 17 17 N 1.31509 * 119.99971 * 359.97438 * 16 14 11 18 18 Si 1.86797 * 119.99838 * 179.97438 * 16 14 11 19 19 H 1.48500 * 109.47107 * 60.00175 * 18 16 14 20 20 H 1.48499 * 109.47158 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.47218 * 300.00136 * 18 16 14 22 22 C 1.38217 * 120.00041 * 179.97438 * 2 1 3 23 23 H 1.09008 * 109.46847 * 90.00471 * 1 2 3 24 24 H 1.08998 * 109.47421 * 209.99712 * 1 2 3 25 25 H 1.08993 * 109.47234 * 330.00366 * 1 2 3 26 26 H 1.08000 * 119.99755 * 359.97438 * 3 2 1 27 27 H 1.08002 * 119.99776 * 179.97438 * 4 3 2 28 28 H 1.08000 * 120.00399 * 179.97438 * 5 4 3 29 29 H 1.08992 * 109.47129 * 299.99904 * 9 7 6 30 30 H 1.09004 * 109.46998 * 60.00137 * 9 7 6 31 31 H 1.09003 * 109.46940 * 180.02562 * 9 7 6 32 32 H 0.97006 * 119.99912 * 35.00212 * 10 7 6 33 33 H 0.97005 * 119.99889 * 179.97438 * 17 16 14 34 34 H 1.08001 * 119.99701 * 0.02562 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1973 -0.0005 5 6 4.2717 0.0000 -0.0016 6 6 3.5807 -1.1970 -0.0016 7 6 4.3342 -2.5021 -0.0095 8 1 3.6777 -3.2985 -0.3600 9 6 4.8135 -2.8228 1.4076 10 7 5.4899 -2.3932 -0.9031 11 16 5.9772 -3.7042 -1.7899 12 8 7.0843 -3.2723 -2.5692 13 8 6.0430 -4.7983 -0.8856 14 6 4.6831 -4.0752 -2.9266 15 1 3.7853 -3.4750 -2.9374 16 6 4.8166 -5.1317 -3.8024 17 7 5.9101 -5.8622 -3.7896 18 14 3.4443 -5.5255 -5.0070 19 1 3.2099 -4.3549 -5.8902 20 1 3.8313 -6.6978 -5.8323 21 1 2.2011 -5.8363 -4.2567 22 6 2.1981 -1.1970 0.0005 23 1 -0.3633 -0.0001 -1.0278 24 1 -0.3634 -0.8900 0.5138 25 1 -0.3633 0.8900 0.5137 26 1 1.6583 2.1326 -0.0004 27 1 4.1204 2.1327 -0.0010 28 1 5.3517 -0.0001 -0.0024 29 1 5.4700 -2.0264 1.7580 30 1 3.9535 -2.9038 2.0725 31 1 5.3589 -3.7666 1.4018 32 1 5.9697 -1.5533 -0.9754 33 1 6.0039 -6.6057 -4.4055 34 1 1.6581 -2.1323 0.0005 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192988162.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:20 Heat of formation + Delta-G solvation = -82.511548 kcal Electronic energy + Delta-G solvation = -18578.766665 eV Core-core repulsion = 15602.260220 eV Total energy + Delta-G solvation = -2976.506445 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.087 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.49433 -35.91073 -35.08193 -33.91989 -33.07310 -32.35607 -30.72391 -28.57809 -26.82930 -26.11348 -23.39445 -22.00417 -19.95181 -19.02519 -17.48602 -16.66416 -16.12796 -15.49120 -15.17271 -14.63324 -14.35751 -14.03938 -13.80410 -13.38140 -13.12210 -13.06937 -12.89063 -12.24359 -12.11100 -11.95151 -11.70656 -11.37631 -11.21070 -11.18172 -10.96790 -10.70201 -10.61375 -10.27653 -10.19228 -10.10681 -9.22363 -9.06964 -8.68478 -8.54064 -8.43246 -6.68415 -5.30108 1.46708 1.50827 2.37828 3.09418 3.13789 3.19740 3.86362 4.08172 4.65750 4.75758 4.79769 4.90294 5.02786 5.23285 5.33978 5.52795 5.56593 5.58096 5.67540 5.73867 5.81260 5.83560 6.01857 6.13476 6.19499 6.25411 6.50271 6.54560 6.63112 6.64731 6.75698 6.98043 7.13962 7.34314 7.90860 8.00017 8.90812 10.25808 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.019667 B = 0.006635 C = 0.005566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.351788 B = 4218.803717 C = 5029.298004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.088 4.088 3 C -0.129 4.129 4 C -0.116 4.116 5 C -0.115 4.115 6 C -0.070 4.070 7 C 0.195 3.805 8 H 0.097 0.903 9 C -0.164 4.164 10 N -1.130 6.130 11 S 2.715 3.285 12 O -1.008 7.008 13 O -1.005 7.005 14 C -1.021 5.021 15 H 0.102 0.898 16 C 0.134 3.866 17 N -0.845 5.845 18 Si 0.919 3.081 19 H -0.264 1.264 20 H -0.276 1.276 21 H -0.264 1.264 22 C -0.113 4.113 23 H 0.069 0.931 24 H 0.066 0.934 25 H 0.063 0.937 26 H 0.117 0.883 27 H 0.119 0.881 28 H 0.121 0.879 29 H 0.055 0.945 30 H 0.059 0.941 31 H 0.077 0.923 32 H 0.400 0.600 33 H 0.291 0.709 34 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.963 11.007 7.714 16.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.088 4.088 3 C -0.147 4.147 4 C -0.134 4.134 5 C -0.134 4.134 6 C -0.072 4.072 7 C 0.087 3.913 8 H 0.115 0.885 9 C -0.223 4.223 10 N -0.884 5.884 11 S 2.814 3.186 12 O -0.998 6.998 13 O -0.994 6.994 14 C -1.154 5.154 15 H 0.120 0.880 16 C -0.084 4.084 17 N -0.475 5.475 18 Si 0.743 3.257 19 H -0.189 1.189 20 H -0.201 1.201 21 H -0.188 1.188 22 C -0.132 4.132 23 H 0.088 0.912 24 H 0.085 0.915 25 H 0.082 0.918 26 H 0.135 0.865 27 H 0.137 0.863 28 H 0.139 0.861 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.096 0.904 32 H 0.232 0.768 33 H 0.101 0.899 34 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -8.094 10.216 7.790 15.184 hybrid contribution -1.037 0.333 -1.034 1.502 sum -9.131 10.548 6.756 15.501 Atomic orbital electron populations 1.20776 0.91406 1.02484 1.02286 1.19863 0.95883 0.93147 0.99902 1.20949 0.94266 0.97236 1.02284 1.21068 0.94257 0.97787 1.00301 1.20934 0.99985 0.91911 1.00550 1.20168 0.93735 0.95321 0.97961 1.19483 0.86841 0.94127 0.90823 0.88505 1.22314 1.01526 1.03071 0.95423 1.56183 1.41923 1.30640 1.59641 1.00428 0.74555 0.70559 0.73021 1.93374 1.54053 1.81854 1.70524 1.93358 1.87960 1.51737 1.66392 1.30542 1.23031 1.24890 1.36987 0.88017 1.24729 0.96008 0.92458 0.95230 1.69889 1.25597 1.16782 1.35246 0.86228 0.81155 0.78487 0.79860 1.18892 1.20118 1.18839 1.20956 0.93427 0.97824 1.00952 0.91243 0.91546 0.91843 0.86537 0.86270 0.86072 0.92626 0.92167 0.90364 0.76806 0.89857 0.85749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.06 10.01 36.01 0.36 -0.70 16 2 C -0.09 -1.08 5.88 -104.62 -0.62 -1.70 16 3 C -0.13 -1.52 9.70 -39.58 -0.38 -1.90 16 4 C -0.12 -1.41 10.05 -39.59 -0.40 -1.81 16 5 C -0.12 -1.60 9.15 -39.58 -0.36 -1.97 16 6 C -0.07 -1.07 4.95 -104.62 -0.52 -1.59 16 7 C 0.20 3.41 2.98 -69.08 -0.21 3.20 16 8 H 0.10 1.77 7.71 -51.93 -0.40 1.37 16 9 C -0.16 -2.56 9.49 37.16 0.35 -2.21 16 10 N -1.13 -22.55 5.43 -5.88 -0.03 -22.58 16 11 S 2.71 71.83 4.93 -107.50 -0.53 71.30 16 12 O -1.01 -29.74 18.02 -57.17 -1.03 -30.77 16 13 O -1.00 -28.84 17.28 -57.17 -0.99 -29.83 16 14 C -1.02 -28.14 9.58 30.60 0.29 -27.85 16 15 H 0.10 2.58 7.81 -52.49 -0.41 2.17 16 16 C 0.13 3.75 5.46 -17.82 -0.10 3.65 16 17 N -0.85 -24.96 13.19 55.43 0.73 -24.23 16 18 Si 0.92 20.68 29.54 -169.99 -5.02 15.66 16 19 H -0.26 -5.79 7.11 56.52 0.40 -5.39 16 20 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 21 H -0.26 -5.70 7.11 56.52 0.40 -5.29 16 22 C -0.11 -1.58 9.32 -39.58 -0.37 -1.95 16 23 H 0.07 0.63 8.14 -51.92 -0.42 0.21 16 24 H 0.07 0.58 8.09 -51.93 -0.42 0.16 16 25 H 0.06 0.50 8.09 -51.93 -0.42 0.08 16 26 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 27 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 28 H 0.12 1.55 6.83 -52.49 -0.36 1.19 16 29 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.08 1.38 7.64 -51.93 -0.40 0.98 16 32 H 0.40 7.01 7.09 -34.47 -0.24 6.76 16 33 H 0.29 7.74 8.31 -40.82 -0.34 7.40 16 34 H 0.12 1.59 8.04 -52.49 -0.42 1.16 16 LS Contribution 306.42 15.07 4.62 4.62 Total: -1.00 -34.75 306.42 -8.52 -43.27 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: -4.32 Total: 7.39 kcal Atomic # 6 Polarization: -32.88 SS G_CDS: -1.94 Total: -34.83 kcal Atomic # 7 Polarization: -47.51 SS G_CDS: 0.70 Total: -46.81 kcal Atomic # 8 Polarization: -58.58 SS G_CDS: -2.02 Total: -60.60 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Atomic # 16 Polarization: 71.83 SS G_CDS: -0.53 Total: 71.30 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -34.75 -8.52 -43.27 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192988162.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.242 kcal (2) G-P(sol) polarization free energy of solvation -34.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds