Wall clock time and date at job start Mon Mar 30 2020 01:38:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38258 * 120.00010 * 2 1 4 4 C 1.38211 * 120.00113 * 180.25649 * 3 2 1 5 5 C 1.38261 * 120.00022 * 359.78451 * 4 3 2 6 6 C 1.38214 * 119.99661 * 359.95720 * 5 4 3 7 7 C 1.50703 * 119.99514 * 180.02562 * 6 5 4 8 8 H 1.09004 * 109.46969 * 160.02322 * 7 6 5 9 9 C 1.52999 * 109.46800 * 280.01679 * 7 6 5 10 10 N 1.46495 * 109.47662 * 40.01921 * 7 6 5 11 11 S 1.65599 * 120.00185 * 144.99700 * 10 7 6 12 12 O 1.42095 * 106.40377 * 178.54290 * 11 10 7 13 13 O 1.42097 * 106.40355 * 311.46303 * 11 10 7 14 14 C 1.76198 * 107.21578 * 65.00305 * 11 10 7 15 15 H 1.08007 * 120.00144 * 0.02562 * 14 11 10 16 16 C 1.37879 * 120.00146 * 180.02562 * 14 11 10 17 17 N 1.31516 * 119.99663 * 359.97438 * 16 14 11 18 18 Si 1.86803 * 120.00135 * 180.02562 * 16 14 11 19 19 H 1.48495 * 109.47026 * 89.99760 * 18 16 14 20 20 H 1.48500 * 109.46991 * 209.99876 * 18 16 14 21 21 H 1.48507 * 109.46899 * 329.99515 * 18 16 14 22 22 C 1.38211 * 120.00162 * 179.75882 * 2 1 3 23 23 H 1.09001 * 109.47236 * 270.23378 * 1 2 3 24 24 H 1.09000 * 109.47285 * 30.23570 * 1 2 3 25 25 H 1.08993 * 109.47149 * 150.24066 * 1 2 3 26 26 H 1.08004 * 120.00386 * 0.02562 * 3 2 1 27 27 H 1.08001 * 120.00363 * 179.76462 * 4 3 2 28 28 H 1.07997 * 119.99874 * 179.97438 * 5 4 3 29 29 H 1.08997 * 109.47477 * 60.00367 * 9 7 6 30 30 H 1.08998 * 109.47072 * 180.02562 * 9 7 6 31 31 H 1.09000 * 109.47548 * 300.00484 * 9 7 6 32 32 H 0.97006 * 119.99727 * 325.00755 * 10 7 6 33 33 H 0.97001 * 119.99428 * 180.02562 * 17 16 14 34 34 H 1.08002 * 120.00200 * 0.02562 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5803 1.1974 -0.0054 5 6 4.2717 0.0000 -0.0062 6 6 3.5806 -1.1969 -0.0008 7 6 4.3342 -2.5020 -0.0012 8 1 3.6809 -3.2989 0.3543 9 6 4.8005 -2.8211 -1.4230 10 7 5.4980 -2.3942 0.8819 11 16 5.9934 -3.7061 1.7628 12 8 7.1489 -3.2946 2.4802 13 8 4.8319 -4.2277 2.3935 14 6 6.5299 -4.9317 0.6162 15 1 6.4900 -4.7331 -0.4447 16 6 7.0006 -6.1444 1.0733 17 7 7.0496 -6.3861 2.3651 18 14 7.5700 -7.4435 -0.1423 19 1 9.0188 -7.2652 -0.4148 20 1 7.3365 -8.7935 0.4305 21 1 6.8072 -7.3045 -1.4089 22 6 2.1980 -1.1969 0.0050 23 1 -0.3634 0.0042 1.0277 24 1 -0.3634 0.8878 -0.5175 25 1 -0.3633 -0.8921 -0.5101 26 1 1.6583 2.1327 0.0004 27 1 4.1204 2.1327 -0.0092 28 1 5.3516 0.0001 -0.0108 29 1 5.4538 -2.0244 -1.7786 30 1 5.3452 -3.7653 -1.4233 31 1 3.9346 -2.9014 -2.0801 32 1 5.9785 -1.5543 0.9508 33 1 7.3811 -7.2391 2.6866 34 1 1.6581 -2.1323 0.0086 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192988164.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:23 Heat of formation + Delta-G solvation = -81.488190 kcal Electronic energy + Delta-G solvation = -18501.974179 eV Core-core repulsion = 15525.512110 eV Total energy + Delta-G solvation = -2976.462069 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.087 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.50545 -35.90583 -35.10043 -33.92298 -33.08719 -32.37526 -30.73418 -28.60690 -26.84322 -26.09734 -23.40088 -22.00832 -19.95760 -19.00096 -17.51276 -16.75366 -16.12071 -15.44260 -15.15902 -14.61460 -14.37955 -14.08606 -13.79074 -13.48387 -13.13798 -13.06289 -12.83791 -12.27121 -12.18247 -12.01268 -11.75633 -11.31860 -11.21837 -11.19748 -10.90340 -10.64806 -10.52236 -10.26920 -10.21232 -10.13239 -9.23623 -9.05078 -8.67447 -8.53138 -8.45968 -6.68812 -5.30593 1.45117 1.49378 2.37945 3.07366 3.14397 3.20080 3.85275 4.07298 4.65550 4.74929 4.79700 4.89137 5.02083 5.22341 5.33301 5.52014 5.55416 5.57390 5.68978 5.72706 5.80325 5.88828 6.00749 6.12660 6.19053 6.24397 6.49537 6.52985 6.59991 6.63168 6.76147 6.98013 7.12901 7.35881 7.91803 8.00619 8.90505 10.25486 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.031778 B = 0.005239 C = 0.005066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.895325 B = 5342.910150 C = 5526.227240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.088 4.088 3 C -0.130 4.130 4 C -0.116 4.116 5 C -0.117 4.117 6 C -0.069 4.069 7 C 0.193 3.807 8 H 0.100 0.900 9 C -0.170 4.170 10 N -1.130 6.130 11 S 2.714 3.286 12 O -1.008 7.008 13 O -1.007 7.007 14 C -1.021 5.021 15 H 0.106 0.894 16 C 0.133 3.867 17 N -0.845 5.845 18 Si 0.920 3.080 19 H -0.268 1.268 20 H -0.275 1.275 21 H -0.262 1.262 22 C -0.113 4.113 23 H 0.069 0.931 24 H 0.063 0.937 25 H 0.066 0.934 26 H 0.117 0.883 27 H 0.119 0.881 28 H 0.122 0.878 29 H 0.057 0.943 30 H 0.080 0.920 31 H 0.059 0.941 32 H 0.400 0.600 33 H 0.290 0.710 34 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.741 10.876 -8.000 16.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.088 4.088 3 C -0.148 4.148 4 C -0.134 4.134 5 C -0.135 4.135 6 C -0.071 4.071 7 C 0.085 3.915 8 H 0.118 0.882 9 C -0.229 4.229 10 N -0.884 5.884 11 S 2.814 3.186 12 O -0.998 6.998 13 O -0.997 6.997 14 C -1.154 5.154 15 H 0.125 0.875 16 C -0.085 4.085 17 N -0.475 5.475 18 Si 0.744 3.256 19 H -0.193 1.193 20 H -0.200 1.200 21 H -0.186 1.186 22 C -0.131 4.131 23 H 0.088 0.912 24 H 0.082 0.918 25 H 0.085 0.915 26 H 0.135 0.865 27 H 0.137 0.863 28 H 0.140 0.860 29 H 0.076 0.924 30 H 0.099 0.901 31 H 0.078 0.922 32 H 0.232 0.768 33 H 0.101 0.899 34 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -8.830 10.534 -6.885 15.373 hybrid contribution 0.727 -0.493 -1.142 1.441 sum -8.103 10.040 -8.027 15.196 Atomic orbital electron populations 1.20773 0.91375 1.02514 1.02276 1.19868 0.95907 0.93135 0.99924 1.20956 0.94269 0.97249 1.02312 1.21076 0.94260 0.97793 1.00320 1.20962 1.00052 0.91910 1.00592 1.20155 0.93737 0.95287 0.97911 1.19500 0.86794 0.94404 0.90843 0.88240 1.22428 1.01635 1.03386 0.95459 1.56145 1.40466 1.29449 1.62346 1.00443 0.72704 0.71974 0.73528 1.93371 1.50922 1.83046 1.72465 1.93356 1.52138 1.78824 1.75362 1.30663 1.58854 1.16231 1.09636 0.87547 1.24749 0.90164 0.97933 0.95656 1.69905 1.38244 1.25876 1.13467 0.86179 0.79601 0.79059 0.80800 1.19252 1.20031 1.18643 1.20964 0.93435 0.97839 1.00898 0.91248 0.91829 0.91523 0.86509 0.86252 0.85987 0.92408 0.90138 0.92196 0.76797 0.89924 0.85720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.04 10.01 36.00 0.36 -0.68 16 2 C -0.09 -1.08 5.88 -104.63 -0.62 -1.69 16 3 C -0.13 -1.50 9.70 -39.58 -0.38 -1.89 16 4 C -0.12 -1.41 10.05 -39.58 -0.40 -1.80 16 5 C -0.12 -1.62 9.16 -39.58 -0.36 -1.98 16 6 C -0.07 -1.06 4.95 -104.62 -0.52 -1.58 16 7 C 0.19 3.37 3.11 -69.08 -0.21 3.15 16 8 H 0.10 1.86 7.36 -51.93 -0.38 1.47 16 9 C -0.17 -2.63 9.49 37.16 0.35 -2.28 16 10 N -1.13 -22.58 5.43 -5.88 -0.03 -22.61 16 11 S 2.71 71.85 5.00 -107.50 -0.54 71.31 16 12 O -1.01 -29.71 18.02 -57.18 -1.03 -30.74 16 13 O -1.01 -29.46 17.36 -57.18 -0.99 -30.45 16 14 C -1.02 -27.49 9.57 30.60 0.29 -27.20 16 15 H 0.11 2.57 5.62 -52.48 -0.29 2.28 16 16 C 0.13 3.67 5.46 -17.82 -0.10 3.57 16 17 N -0.85 -24.81 13.19 55.43 0.73 -24.08 16 18 Si 0.92 20.34 29.54 -169.99 -5.02 15.32 16 19 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 20 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 21 H -0.26 -5.55 7.11 56.52 0.40 -5.15 16 22 C -0.11 -1.57 9.33 -39.58 -0.37 -1.94 16 23 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 24 H 0.06 0.49 8.09 -51.93 -0.42 0.07 16 25 H 0.07 0.57 8.08 -51.93 -0.42 0.15 16 26 H 0.12 1.07 8.06 -52.48 -0.42 0.65 16 27 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 28 H 0.12 1.56 6.82 -52.49 -0.36 1.21 16 29 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.08 1.37 5.74 -51.93 -0.30 1.07 16 31 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.40 7.01 7.08 -34.47 -0.24 6.77 16 33 H 0.29 7.66 8.31 -40.82 -0.34 7.32 16 34 H 0.12 1.59 8.04 -52.49 -0.42 1.17 16 LS Contribution 302.25 15.07 4.55 4.55 Total: -1.00 -34.79 302.25 -8.37 -43.16 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: -4.09 Total: 7.85 kcal Atomic # 6 Polarization: -32.36 SS G_CDS: -1.95 Total: -34.32 kcal Atomic # 7 Polarization: -47.38 SS G_CDS: 0.70 Total: -46.69 kcal Atomic # 8 Polarization: -59.18 SS G_CDS: -2.02 Total: -61.20 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Atomic # 16 Polarization: 71.85 SS G_CDS: -0.54 Total: 71.31 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -34.79 -8.37 -43.16 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192988164.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.326 kcal (2) G-P(sol) polarization free energy of solvation -34.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds