Wall clock time and date at job start Mon Mar 30 2020 01:38:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38253 * 119.99637 * 2 1 4 4 C 1.38218 * 119.99968 * 179.76433 * 3 2 1 5 5 C 1.38256 * 119.99875 * 0.52799 * 4 3 2 6 6 C 1.50698 * 120.00131 * 179.74052 * 5 4 3 7 7 N 1.46494 * 109.47119 * 259.72722 * 6 5 4 8 8 S 1.65608 * 119.99583 * 165.00070 * 7 6 5 9 9 O 1.42102 * 106.39826 * 178.53759 * 8 7 6 10 10 O 1.42099 * 106.40116 * 311.45886 * 8 7 6 11 11 C 1.76203 * 107.21790 * 65.00194 * 8 7 6 12 12 H 1.08003 * 120.00020 * 359.97438 * 11 8 7 13 13 C 1.37878 * 119.99833 * 180.02562 * 11 8 7 14 14 N 1.31513 * 120.00026 * 359.97438 * 13 11 8 15 15 Si 1.86797 * 119.99948 * 179.97438 * 13 11 8 16 16 H 1.48504 * 109.47041 * 0.02562 * 15 13 11 17 17 H 1.48506 * 109.47154 * 119.99780 * 15 13 11 18 18 H 1.48493 * 109.47288 * 239.99941 * 15 13 11 19 19 C 1.38216 * 119.99724 * 359.47334 * 5 4 3 20 20 C 1.50699 * 120.00089 * 180.27670 * 19 5 4 21 21 C 1.38208 * 120.00125 * 180.02562 * 2 1 3 22 22 H 1.08994 * 109.47597 * 269.97798 * 1 2 3 23 23 H 1.08997 * 109.47136 * 29.98707 * 1 2 3 24 24 H 1.09006 * 109.46387 * 149.97930 * 1 2 3 25 25 H 1.07999 * 120.00409 * 359.97438 * 3 2 1 26 26 H 1.08002 * 120.00010 * 180.27359 * 4 3 2 27 27 H 1.09005 * 109.46940 * 139.72415 * 6 5 4 28 28 H 1.09001 * 109.46724 * 19.73359 * 6 5 4 29 29 H 0.96995 * 120.00292 * 345.27533 * 7 6 5 30 30 H 0.97002 * 120.00292 * 180.02562 * 14 13 11 31 31 H 1.09001 * 109.47542 * 89.99307 * 20 19 5 32 32 H 1.09000 * 109.47185 * 209.99707 * 20 19 5 33 33 H 1.09007 * 109.46967 * 330.00147 * 20 19 5 34 34 H 1.08003 * 120.00182 * 359.97438 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 6 3.5804 1.1974 0.0049 5 6 4.2717 0.0002 -0.0012 6 6 5.7787 0.0002 -0.0017 7 7 6.2666 -0.2394 -1.3621 8 16 7.8486 0.0709 -1.7410 9 8 8.0128 -0.2913 -3.1053 10 8 8.1331 1.3707 -1.2423 11 6 8.8379 -1.0483 -0.8066 12 1 8.3685 -1.7587 -0.1421 13 6 10.2114 -1.0166 -0.9229 14 7 10.7830 -0.1512 -1.7316 15 14 11.2603 -2.2026 0.0683 16 1 10.3817 -3.0678 0.8958 17 1 12.0587 -3.0481 -0.8553 18 1 12.1744 -1.4353 0.9520 19 6 3.5807 -1.1968 -0.0012 20 6 4.3342 -2.5019 -0.0016 21 6 2.1981 -1.1969 -0.0005 22 1 -0.3634 -0.0004 1.0276 23 1 -0.3633 0.8901 -0.5136 24 1 -0.3632 -0.8899 -0.5142 25 1 1.6582 2.1326 -0.0004 26 1 4.1203 2.1328 0.0094 27 1 6.1423 -0.7871 0.6587 28 1 6.1421 0.9659 0.3499 29 1 5.6621 -0.5760 -2.0419 30 1 11.7493 -0.1291 -1.8137 31 1 4.5162 -2.8167 1.0260 32 1 3.7450 -3.2615 -0.5153 33 1 5.2866 -2.3715 -0.5156 34 1 1.6581 -2.1323 -0.0005 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192988571.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:08 Heat of formation + Delta-G solvation = -110.959162 kcal Electronic energy + Delta-G solvation = -18320.239606 eV Core-core repulsion = 15342.499579 eV Total energy + Delta-G solvation = -2977.740027 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.087 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.64992 -37.43022 -36.54273 -36.14338 -35.17393 -33.76925 -32.80759 -28.77325 -28.25724 -27.96523 -25.05675 -23.00659 -21.16834 -20.90650 -19.36501 -18.31443 -17.50686 -16.83471 -16.77048 -16.20065 -15.88305 -15.60028 -15.29314 -14.75123 -14.31976 -13.99461 -13.99037 -13.96838 -13.60972 -13.29257 -13.10213 -13.01673 -12.80735 -12.68075 -12.51999 -12.43230 -12.30324 -12.26659 -11.80780 -11.68387 -11.25754 -11.00508 -10.21488 -9.64398 -9.37755 -8.74806 -7.47781 0.16049 0.49783 0.57241 1.34742 1.35907 1.53475 2.22043 2.58947 2.74216 3.12109 3.68104 3.78681 3.89937 4.05787 4.09882 4.30455 4.46107 4.52056 4.57837 4.69729 4.72214 4.84191 4.89782 4.90599 4.98203 5.07232 5.12412 5.29840 5.32299 5.40632 5.56612 5.71010 5.78446 5.91266 6.15146 6.33679 6.79115 8.22102 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.032749 B = 0.005017 C = 0.004662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.770730 B = 5579.675469 C = 6005.197595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.084 4.084 3 C -0.135 4.135 4 C -0.111 4.111 5 C -0.117 4.117 6 C 0.163 3.837 7 N -1.115 6.115 8 S 2.719 3.281 9 O -1.045 7.045 10 O -1.044 7.044 11 C -1.037 5.037 12 H 0.124 0.876 13 C 0.069 3.931 14 N -0.895 5.895 15 Si 0.992 3.008 16 H -0.245 1.245 17 H -0.261 1.261 18 H -0.260 1.260 19 C -0.072 4.072 20 C -0.128 4.128 21 C -0.129 4.129 22 H 0.081 0.919 23 H 0.074 0.926 24 H 0.076 0.924 25 H 0.141 0.859 26 H 0.123 0.877 27 H 0.078 0.922 28 H 0.068 0.932 29 H 0.412 0.588 30 H 0.299 0.701 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.062 0.938 34 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.889 -4.042 7.011 19.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.085 4.085 3 C -0.153 4.153 4 C -0.130 4.130 5 C -0.119 4.119 6 C 0.037 3.963 7 N -0.874 5.874 8 S 2.821 3.179 9 O -1.035 7.035 10 O -1.034 7.034 11 C -1.170 5.170 12 H 0.142 0.858 13 C -0.144 4.144 14 N -0.527 5.527 15 Si 0.810 3.190 16 H -0.168 1.168 17 H -0.185 1.185 18 H -0.184 1.184 19 C -0.072 4.072 20 C -0.184 4.184 21 C -0.147 4.147 22 H 0.099 0.901 23 H 0.093 0.907 24 H 0.095 0.905 25 H 0.159 0.841 26 H 0.141 0.859 27 H 0.096 0.904 28 H 0.087 0.913 29 H 0.246 0.754 30 H 0.109 0.891 31 H 0.100 0.900 32 H 0.102 0.898 33 H 0.081 0.919 34 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -17.335 -3.188 6.445 18.767 hybrid contribution 0.781 -0.630 0.208 1.024 sum -16.554 -3.818 6.652 18.245 Atomic orbital electron populations 1.20832 0.88958 1.03694 1.03223 1.20313 0.97667 0.92719 0.97779 1.21249 0.93354 0.98867 1.01845 1.21286 0.95206 0.97486 0.99013 1.19764 0.93913 0.94087 1.04114 1.20085 0.91459 1.01770 0.82936 1.55424 1.28847 1.84649 1.18455 0.99896 0.71234 0.74019 0.72775 1.93310 1.85853 1.85611 1.38765 1.93298 1.84341 1.43572 1.82194 1.30899 1.04640 1.38043 1.43466 0.85838 1.26042 0.99060 0.95798 0.93479 1.70002 1.14588 1.34151 1.33936 0.85073 0.77683 0.77823 0.78397 1.16751 1.18498 1.18432 1.20007 0.94438 0.94816 0.97985 1.20981 1.00344 0.93748 1.03352 1.21171 0.92771 0.98793 1.01982 0.90063 0.90721 0.90542 0.84122 0.85934 0.90368 0.91339 0.75409 0.89130 0.89956 0.89780 0.91923 0.83864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.42 10.01 71.24 0.71 -0.71 16 2 C -0.08 -1.68 5.88 -19.87 -0.12 -1.80 16 3 C -0.14 -3.00 9.70 22.27 0.22 -2.79 16 4 C -0.11 -3.04 9.67 22.27 0.22 -2.82 16 5 C -0.12 -3.47 5.27 -19.87 -0.10 -3.58 16 6 C 0.16 5.75 5.48 85.63 0.47 6.22 16 7 N -1.11 -45.34 5.33 -190.80 -1.02 -46.36 16 8 S 2.72 147.95 5.02 -56.49 -0.28 147.67 16 9 O -1.05 -63.53 18.02 -128.00 -2.31 -65.84 16 10 O -1.04 -63.22 17.49 -128.00 -2.24 -65.46 16 11 C -1.04 -56.76 9.72 67.73 0.66 -56.10 16 12 H 0.12 6.01 7.81 -2.91 -0.02 5.99 16 13 C 0.07 3.83 5.46 84.66 0.46 4.29 16 14 N -0.90 -53.72 13.19 21.45 0.28 -53.44 16 15 Si 0.99 41.06 29.54 68.60 2.03 43.09 16 16 H -0.24 -9.33 7.11 99.48 0.71 -8.62 16 17 H -0.26 -10.24 7.11 99.48 0.71 -9.54 16 18 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 19 C -0.07 -1.83 5.88 -19.86 -0.12 -1.95 16 20 C -0.13 -2.97 9.26 71.24 0.66 -2.31 16 21 C -0.13 -2.74 9.36 22.27 0.21 -2.53 16 22 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 23 H 0.07 0.84 8.09 -2.39 -0.02 0.82 16 24 H 0.08 0.83 8.09 -2.38 -0.02 0.81 16 25 H 0.14 2.43 8.06 -2.91 -0.02 2.40 16 26 H 0.12 3.30 8.04 -2.91 -0.02 3.27 16 27 H 0.08 2.57 7.28 -2.38 -0.02 2.56 16 28 H 0.07 2.56 7.61 -2.39 -0.02 2.54 16 29 H 0.41 15.05 8.64 -96.75 -0.84 14.21 16 30 H 0.30 16.03 8.31 -92.71 -0.77 15.26 16 31 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.08 1.59 8.09 -2.39 -0.02 1.57 16 33 H 0.06 1.72 6.34 -2.38 -0.02 1.70 16 34 H 0.14 2.29 8.06 -2.91 -0.02 2.26 16 Total: -1.00 -76.14 306.30 0.00 -76.14 By element: Atomic # 1 Polarization: 28.01 SS G_CDS: 0.27 Total: 28.29 kcal Atomic # 6 Polarization: -67.35 SS G_CDS: 3.26 Total: -64.08 kcal Atomic # 7 Polarization: -99.07 SS G_CDS: -0.73 Total: -99.80 kcal Atomic # 8 Polarization: -126.75 SS G_CDS: -4.54 Total: -131.29 kcal Atomic # 14 Polarization: 41.06 SS G_CDS: 2.03 Total: 43.09 kcal Atomic # 16 Polarization: 147.95 SS G_CDS: -0.28 Total: 147.67 kcal Total: -76.14 0.00 -76.14 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192988571.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.823 kcal (2) G-P(sol) polarization free energy of solvation -76.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds