Wall clock time and date at job start Mon Mar 30 2020 00:34:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86799 * 119.99918 * 2 1 4 4 H 1.48503 * 109.46838 * 239.99844 * 3 2 1 5 5 H 1.48499 * 109.47432 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47002 * 120.00028 * 3 2 1 7 7 C 1.38808 * 119.99546 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99671 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00264 * 0.02562 * 7 2 1 10 10 C 1.47415 * 125.65040 * 0.02562 * 9 7 2 11 11 C 1.54911 * 104.83721 * 155.83716 * 10 9 7 12 12 C 1.55157 * 101.57733 * 37.00794 * 11 10 9 13 13 H 1.09000 * 110.72143 * 83.04728 * 12 11 10 14 14 O 1.42901 * 110.71853 * 206.13880 * 12 11 10 15 15 C 1.35456 * 117.00207 * 207.56248 * 14 12 11 16 16 N 1.32326 * 119.19158 * 179.97438 * 15 14 12 17 17 C 1.32327 * 120.79641 * 179.97438 * 16 15 14 18 18 C 1.38515 * 119.19201 * 0.02562 * 17 16 15 19 19 C 1.38773 * 118.50891 * 359.97438 * 18 17 16 20 20 Cl 1.73606 * 120.42884 * 179.97438 * 19 18 17 21 21 N 1.32306 * 119.18743 * 0.02562 * 15 14 12 22 22 C 1.47321 * 125.61277 * 180.16392 * 9 7 2 23 23 H 0.96997 * 119.99450 * 0.02562 * 1 2 3 24 24 H 1.09003 * 110.36938 * 36.99311 * 10 9 7 25 25 H 1.09006 * 110.46008 * 274.72133 * 10 9 7 26 26 H 1.09001 * 111.00209 * 278.93655 * 11 10 9 27 27 H 1.08994 * 111.00521 * 155.08226 * 11 10 9 28 28 H 1.08005 * 120.40636 * 179.97438 * 17 16 15 29 29 H 1.08003 * 120.74815 * 179.72622 * 18 17 16 30 30 H 1.08998 * 110.06786 * 61.75408 * 22 9 7 31 31 H 1.09002 * 109.85323 * 300.49116 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0016 10 6 -0.1415 -2.5331 -0.0028 11 6 -0.4013 -3.9315 -0.6166 12 6 0.7783 -4.7524 -0.0317 13 1 0.5438 -5.1019 0.9737 14 8 1.1009 -5.8524 -0.8849 15 6 1.6562 -6.9412 -0.3012 16 7 1.9717 -7.9851 -1.0508 17 6 2.5161 -9.0650 -0.5138 18 6 2.7544 -9.0944 0.8504 19 6 2.4114 -7.9826 1.6068 20 17 2.6876 -7.9659 3.3206 21 7 1.8689 -6.9353 1.0046 22 6 1.9337 -3.7298 0.0012 23 1 -0.4849 0.8401 -0.0004 24 1 -0.5989 -1.7580 -0.6177 25 1 -0.5297 -2.4874 1.0147 26 1 -0.3509 -3.8960 -1.7048 27 1 -1.3589 -4.3323 -0.2842 28 1 2.7707 -9.9136 -1.1315 29 1 3.1935 -9.9645 1.3156 30 1 2.5269 -3.8697 0.9049 31 1 2.5629 -3.8529 -0.8804 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001234539527.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:34:36 Heat of formation + Delta-G solvation = 48.236871 kcal Electronic energy + Delta-G solvation = -17962.516391 eV Core-core repulsion = 14886.095572 eV Total energy + Delta-G solvation = -3076.420818 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 269.067 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.36339 -38.81956 -37.10530 -36.26500 -33.86331 -32.42890 -31.34147 -29.28268 -27.42177 -25.03137 -24.58792 -23.81702 -20.59132 -20.31299 -18.79971 -17.99953 -16.91624 -16.46882 -16.03719 -15.37264 -14.81134 -14.52791 -14.25007 -14.06575 -13.46541 -13.02989 -12.50777 -12.30899 -11.88747 -11.75499 -11.54457 -11.25742 -11.02134 -10.79681 -10.77122 -10.52656 -10.32909 -10.12784 -9.89247 -9.63878 -9.42469 -9.05532 -8.67979 -6.88990 -5.68303 -3.10448 0.63580 0.76389 1.34129 2.56949 3.41085 3.44737 3.46371 3.48455 3.91640 4.38473 4.45701 4.55928 4.80947 5.09292 5.26163 5.33718 5.46506 5.60752 5.73839 5.77627 6.20823 6.38709 6.40733 6.46673 6.60599 6.68553 7.18842 7.42663 7.57927 7.78619 7.89411 8.30422 9.18094 9.77970 10.41354 11.36245 Molecular weight = 269.07amu Principal moments of inertia in cm(-1) A = 0.028107 B = 0.004478 C = 0.004179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.948500 B = 6251.649249 C = 6699.308769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.010 4.010 3 Si 0.918 3.082 4 H -0.284 1.284 5 H -0.289 1.289 6 H -0.285 1.285 7 C -0.223 4.223 8 H 0.078 0.922 9 N -0.600 5.600 10 C 0.155 3.845 11 C -0.138 4.138 12 C 0.076 3.924 13 H 0.098 0.902 14 O -0.270 6.270 15 C 0.531 3.469 16 N -0.524 5.524 17 C 0.202 3.798 18 C -0.264 4.264 19 C 0.263 3.737 20 Cl -0.013 7.013 21 N -0.561 5.561 22 C 0.125 3.875 23 H 0.254 0.746 24 H 0.116 0.884 25 H 0.018 0.982 26 H 0.075 0.925 27 H 0.068 0.932 28 H 0.186 0.814 29 H 0.159 0.841 30 H 0.032 0.968 31 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.330 -19.474 2.457 19.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.205 4.205 3 Si 0.748 3.252 4 H -0.211 1.211 5 H -0.215 1.215 6 H -0.212 1.212 7 C -0.352 4.352 8 H 0.096 0.904 9 N -0.328 5.328 10 C 0.030 3.970 11 C -0.176 4.176 12 C 0.020 3.980 13 H 0.115 0.885 14 O -0.169 6.169 15 C 0.230 3.770 16 N -0.251 5.251 17 C 0.036 3.964 18 C -0.288 4.288 19 C 0.089 3.911 20 Cl 0.016 6.984 21 N -0.293 5.293 22 C -0.002 4.002 23 H 0.065 0.935 24 H 0.133 0.867 25 H 0.036 0.964 26 H 0.094 0.906 27 H 0.087 0.913 28 H 0.203 0.797 29 H 0.176 0.824 30 H 0.050 0.950 31 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 2.768 -18.239 1.887 18.544 hybrid contribution 0.936 0.125 0.917 1.317 sum 3.704 -18.114 2.805 18.700 Atomic orbital electron populations 1.69739 1.04919 1.25070 1.57502 1.24789 0.95764 0.97741 1.02201 0.86103 0.78388 0.82773 0.77936 1.21084 1.21475 1.21166 1.19040 0.90556 0.82181 1.43375 0.90422 1.44414 1.01824 0.99338 1.87179 1.21997 0.84851 0.91522 0.98630 1.23303 0.94746 0.97848 1.01745 1.23909 0.97647 0.82501 0.93961 0.88456 1.86255 1.71998 1.21822 1.36817 1.20724 0.86493 0.87325 0.82435 1.67697 1.17419 1.00464 1.39510 1.23183 0.87442 0.94033 0.91776 1.22465 1.09670 1.00692 0.96014 1.21776 0.91472 0.89572 0.88295 1.98446 1.93526 1.98127 1.08343 1.67400 1.20391 1.29904 1.11619 1.21622 0.93539 0.86126 0.98866 0.93532 0.86694 0.96384 0.90630 0.91337 0.79713 0.82364 0.95009 0.94986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.90 10.09 55.49 0.56 -26.34 16 2 C -0.01 -0.27 5.49 -17.43 -0.10 -0.37 16 3 Si 0.92 22.21 29.55 -169.99 -5.02 17.19 16 4 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 6 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 7 C -0.22 -6.36 10.28 -15.06 -0.15 -6.51 16 8 H 0.08 2.14 7.83 -52.48 -0.41 1.73 16 9 N -0.60 -15.89 3.40 -169.83 -0.58 -16.47 16 10 C 0.15 3.80 5.89 -2.53 -0.01 3.79 16 11 C -0.14 -2.74 6.81 -24.58 -0.17 -2.91 16 12 C 0.08 1.50 3.17 -24.90 -0.08 1.42 16 13 H 0.10 1.87 7.01 -51.93 -0.36 1.51 16 14 O -0.27 -5.08 9.92 -18.06 -0.18 -5.26 16 15 C 0.53 8.89 8.49 -91.26 -0.77 8.11 16 16 N -0.52 -7.56 10.46 -14.75 -0.15 -7.71 16 17 C 0.20 1.93 11.30 -17.24 -0.19 1.74 16 18 C -0.26 -2.42 9.97 -39.28 -0.39 -2.81 16 19 C 0.26 3.30 7.33 -17.10 -0.13 3.18 16 20 Cl -0.01 -0.14 29.16 -51.86 -1.51 -1.66 16 21 N -0.56 -8.95 8.68 -11.82 -0.10 -9.05 16 22 C 0.12 2.83 7.04 -2.90 -0.02 2.81 16 23 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 24 H 0.12 3.13 5.87 -51.93 -0.30 2.82 16 25 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 27 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 28 H 0.19 0.89 8.06 -52.48 -0.42 0.47 16 29 H 0.16 0.87 8.06 -52.48 -0.42 0.44 16 30 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.03 0.75 8.06 -51.93 -0.42 0.33 16 LS Contribution 284.11 15.07 4.28 4.28 Total: -1.00 -31.76 284.11 -7.90 -39.65 By element: Atomic # 1 Polarization: 0.09 SS G_CDS: -3.17 Total: -3.08 kcal Atomic # 6 Polarization: 10.47 SS G_CDS: -2.02 Total: 8.45 kcal Atomic # 7 Polarization: -59.30 SS G_CDS: -0.27 Total: -59.57 kcal Atomic # 8 Polarization: -5.08 SS G_CDS: -0.18 Total: -5.26 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Atomic # 17 Polarization: -0.14 SS G_CDS: -1.51 Total: -1.66 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -31.76 -7.90 -39.65 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234539527.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.891 kcal (2) G-P(sol) polarization free energy of solvation -31.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.654 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds