Wall clock time and date at job start Mon Mar 30 2020 01:19:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30756 * 1 3 3 Si 1.86799 * 120.00123 * 2 1 4 4 H 1.48504 * 109.47193 * 239.99860 * 3 2 1 5 5 H 1.48504 * 109.47028 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47405 * 119.99427 * 3 2 1 7 7 C 1.40012 * 119.99968 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00001 * 180.02562 * 7 2 1 9 9 C 1.41359 * 119.99966 * 0.02562 * 7 2 1 10 10 C 1.40715 * 119.76645 * 180.02562 * 9 7 2 11 11 C 1.38271 * 119.19656 * 179.97438 * 10 9 7 12 12 C 1.38706 * 118.69381 * 359.75066 * 11 10 9 13 13 C 1.39923 * 119.46278 * 0.49908 * 12 11 10 14 14 C 1.48222 * 119.61050 * 179.76953 * 13 12 11 15 15 C 1.39453 * 120.06374 * 4.71940 * 14 13 12 16 16 C 1.37913 * 120.02214 * 179.97438 * 15 14 13 17 17 C 1.38740 * 120.18958 * 0.02562 * 16 15 14 18 18 C 1.39437 * 120.03232 * 359.97438 * 17 16 15 19 19 C 1.38271 * 119.95438 * 0.02562 * 18 17 16 20 20 O 1.36533 * 108.61577 * 179.97438 * 18 17 16 21 21 C 1.43982 * 105.46990 * 17.30303 * 20 18 17 22 22 O 1.36475 * 131.37296 * 179.97438 * 17 16 15 23 23 N 1.32273 * 120.77322 * 359.48686 * 13 12 11 24 24 H 0.96994 * 119.99540 * 0.02562 * 1 2 3 25 25 H 1.08006 * 120.40042 * 0.02562 * 10 9 7 26 26 H 1.07995 * 120.65076 * 180.02562 * 11 10 9 27 27 H 1.08005 * 120.26822 * 180.24338 * 12 11 10 28 28 H 1.08000 * 119.98729 * 0.02562 * 15 14 13 29 29 H 1.07998 * 119.90597 * 180.02562 * 16 15 14 30 30 H 1.07998 * 120.03754 * 180.02562 * 19 18 17 31 31 H 1.08998 * 110.56382 * 214.25216 * 21 20 18 32 32 H 1.08995 * 110.56969 * 91.38673 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3076 0.0000 0.0000 3 14 2.2416 1.6177 0.0000 4 1 3.0954 1.6964 -1.2125 5 1 1.2766 2.7465 -0.0006 6 1 3.0952 1.6965 1.2125 7 6 2.0076 -1.2125 0.0005 8 1 3.0876 -1.2125 0.0010 9 6 1.3008 -2.4367 0.0005 10 6 2.0093 -3.6525 0.0016 11 6 1.3061 -4.8430 0.0022 12 6 -0.0802 -4.7976 0.0069 13 6 -0.7282 -3.5575 0.0004 14 6 -2.2095 -3.5051 0.0002 15 6 -2.9501 -4.6820 0.1058 16 6 -4.3284 -4.6323 0.1061 17 6 -4.9825 -3.4133 0.0010 18 6 -4.2470 -2.2334 -0.1049 19 6 -2.8651 -2.2791 -0.1055 20 8 -5.1164 -1.1845 -0.1950 21 6 -6.3814 -1.6933 0.2675 22 8 -6.3110 -3.1016 -0.0224 23 7 -0.0344 -2.4313 -0.0001 24 1 -0.4849 0.8400 -0.0004 25 1 3.0894 -3.6557 0.0029 26 1 1.8260 -5.7896 0.0034 27 1 -0.6549 -5.7121 0.0114 28 1 -2.4442 -5.6326 0.1882 29 1 -4.9001 -5.5448 0.1884 30 1 -2.2941 -1.3660 -0.1870 31 1 -7.2031 -1.2302 -0.2787 32 1 -6.4917 -1.5287 1.3393 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240896827.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:18 Heat of formation + Delta-G solvation = -0.840178 kcal Electronic energy + Delta-G solvation = -19372.677058 eV Core-core repulsion = 16264.268198 eV Total energy + Delta-G solvation = -3108.408860 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.084 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.78436 -38.60988 -36.97263 -35.96689 -33.69186 -31.46602 -30.59631 -29.88903 -28.48317 -26.01845 -25.21487 -23.09881 -22.61193 -21.10102 -20.61118 -17.83373 -17.57502 -17.18260 -16.57599 -16.11914 -15.22443 -14.80256 -14.41317 -14.12255 -13.76325 -13.33477 -13.30916 -13.02610 -12.83888 -12.68081 -12.36605 -12.15689 -11.49542 -11.27000 -11.12206 -10.86518 -10.72510 -10.59262 -10.40344 -9.97499 -9.43859 -8.69604 -8.19879 -7.95521 -7.70134 -7.15781 -6.48266 -4.58753 1.30881 1.71537 2.71886 2.92633 3.06594 3.08153 3.10944 3.19065 3.71507 3.90924 4.13540 4.76183 4.82780 4.89487 5.00070 5.24921 5.46939 5.52629 5.68248 5.85848 5.99321 6.06638 6.31905 6.39223 6.55959 6.63693 6.69836 6.70346 6.84812 7.07424 7.19656 7.25357 7.48159 7.55586 7.65334 7.94752 8.15098 8.59524 8.84122 9.96593 10.24467 Molecular weight = 269.08amu Principal moments of inertia in cm(-1) A = 0.018595 B = 0.006269 C = 0.004706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.417403 B = 4465.599662 C = 5948.145435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.718 5.718 2 C 0.071 3.929 3 Si 0.909 3.091 4 H -0.265 1.265 5 H -0.277 1.277 6 H -0.265 1.265 7 C -0.430 4.430 8 H 0.084 0.916 9 C 0.257 3.743 10 C -0.269 4.269 11 C -0.059 4.059 12 C -0.298 4.298 13 C 0.175 3.825 14 C -0.004 4.004 15 C -0.103 4.103 16 C -0.109 4.109 17 C 0.015 3.985 18 C 0.019 3.981 19 C -0.061 4.061 20 O -0.310 6.310 21 C 0.213 3.787 22 O -0.316 6.316 23 N -0.468 5.468 24 H 0.274 0.726 25 H 0.100 0.900 26 H 0.099 0.901 27 H 0.100 0.900 28 H 0.139 0.861 29 H 0.129 0.871 30 H 0.166 0.834 31 H 0.124 0.876 32 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.115 -3.099 0.954 8.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.339 5.339 2 C -0.155 4.155 3 Si 0.733 3.267 4 H -0.189 1.189 5 H -0.202 1.202 6 H -0.190 1.190 7 C -0.461 4.461 8 H 0.102 0.898 9 C 0.131 3.869 10 C -0.292 4.292 11 C -0.083 4.083 12 C -0.322 4.322 13 C 0.031 3.969 14 C -0.005 4.005 15 C -0.122 4.122 16 C -0.127 4.127 17 C -0.030 4.030 18 C -0.025 4.025 19 C -0.080 4.080 20 O -0.226 6.226 21 C 0.101 3.899 22 O -0.233 6.233 23 N -0.181 5.181 24 H 0.085 0.915 25 H 0.118 0.882 26 H 0.117 0.883 27 H 0.118 0.882 28 H 0.157 0.843 29 H 0.147 0.853 30 H 0.183 0.817 31 H 0.142 0.858 32 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -8.859 -2.009 0.841 9.122 hybrid contribution 0.603 0.000 0.072 0.608 sum -8.255 -2.009 0.912 8.545 Atomic orbital electron populations 1.70039 1.07233 1.28022 1.28616 1.26037 0.94907 1.01067 0.93461 0.86369 0.80079 0.80401 0.79876 1.18942 1.20189 1.18952 1.19573 0.94271 0.89300 1.42929 0.89762 1.18496 0.87739 0.92061 0.88590 1.21814 0.98851 0.93550 1.15003 1.20787 0.93799 0.96736 0.96997 1.21184 0.94571 0.96655 1.19746 1.19544 0.90854 0.90281 0.96188 1.18547 0.92364 0.91311 0.98310 1.21039 0.91826 0.98694 1.00642 1.19825 0.93594 0.94316 1.05009 1.19877 0.81887 0.95405 1.05782 1.19787 0.92397 0.84761 1.05516 1.20667 0.88458 1.01073 0.97778 1.87365 1.19072 1.33477 1.82710 1.25488 0.87458 0.76929 1.00032 1.87262 1.22116 1.25908 1.87992 1.68723 1.07525 1.25129 1.16719 0.91451 0.88172 0.88329 0.88224 0.84324 0.85266 0.81674 0.85817 0.90504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -18.40 11.15 55.55 0.62 -17.78 16 2 C 0.07 1.75 5.50 -17.35 -0.10 1.65 16 3 Si 0.91 18.24 29.56 -169.99 -5.02 13.22 16 4 H -0.26 -5.26 7.11 56.52 0.40 -4.86 16 5 H -0.28 -5.46 7.11 56.52 0.40 -5.06 16 6 H -0.26 -5.25 7.11 56.52 0.40 -4.85 16 7 C -0.43 -11.16 9.14 -37.73 -0.34 -11.51 16 8 H 0.08 2.04 7.85 -52.49 -0.41 1.63 16 9 C 0.26 6.84 6.55 -85.01 -0.56 6.28 16 10 C -0.27 -6.42 9.83 -38.63 -0.38 -6.80 16 11 C -0.06 -1.28 10.15 -39.40 -0.40 -1.68 16 12 C -0.30 -6.46 9.47 -38.78 -0.37 -6.83 16 13 C 0.18 4.17 6.73 -82.94 -0.56 3.61 16 14 C 0.00 -0.09 5.87 -104.90 -0.62 -0.70 16 15 C -0.10 -1.76 9.40 -39.25 -0.37 -2.13 16 16 C -0.11 -1.72 10.04 -39.51 -0.40 -2.11 16 17 C 0.01 0.25 7.16 -38.95 -0.28 -0.02 16 18 C 0.02 0.37 7.14 -39.12 -0.28 0.09 16 19 C -0.06 -1.29 9.58 -39.12 -0.37 -1.67 16 20 O -0.31 -5.43 11.41 -45.80 -0.52 -5.95 16 21 C 0.21 2.76 8.89 101.05 0.90 3.66 16 22 O -0.32 -4.93 11.40 -45.60 -0.52 -5.45 16 23 N -0.47 -12.46 6.92 -7.69 -0.05 -12.52 16 24 H 0.27 6.45 8.29 -40.82 -0.34 6.11 16 25 H 0.10 2.19 8.06 -52.48 -0.42 1.77 16 26 H 0.10 1.79 8.06 -52.49 -0.42 1.37 16 27 H 0.10 1.83 6.19 -52.48 -0.33 1.51 16 28 H 0.14 2.06 6.18 -52.49 -0.32 1.73 16 29 H 0.13 1.63 8.06 -52.49 -0.42 1.21 16 30 H 0.17 3.92 7.22 -52.49 -0.38 3.54 16 31 H 0.12 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 LS Contribution 283.38 15.07 4.27 4.27 Total: -1.00 -29.10 283.38 -8.04 -37.14 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: -2.69 Total: 5.23 kcal Atomic # 6 Polarization: -14.04 SS G_CDS: -4.12 Total: -18.16 kcal Atomic # 7 Polarization: -30.86 SS G_CDS: 0.57 Total: -30.30 kcal Atomic # 8 Polarization: -10.36 SS G_CDS: -1.04 Total: -11.40 kcal Atomic # 14 Polarization: 18.24 SS G_CDS: -5.02 Total: 13.22 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -29.10 -8.04 -37.14 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240896827.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.296 kcal (2) G-P(sol) polarization free energy of solvation -29.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds