Wall clock time and date at job start Mon Mar 30 2020 01:18:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30721 * 1 3 3 Si 1.86793 * 120.00094 * 2 1 4 4 H 1.48504 * 109.46835 * 269.99641 * 3 2 1 5 5 H 1.48498 * 109.47567 * 29.99587 * 3 2 1 6 6 H 1.48502 * 109.47139 * 149.99895 * 3 2 1 7 7 C 1.40119 * 119.99510 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99862 * 179.97438 * 7 2 1 9 9 C 1.40740 * 120.00433 * 0.02562 * 7 2 1 10 10 N 1.33724 * 119.94620 * 359.97438 * 9 7 2 11 11 C 1.31266 * 121.63840 * 179.97438 * 10 9 7 12 12 C 1.39088 * 121.35810 * 359.97438 * 11 10 9 13 13 C 1.38329 * 119.73941 * 0.28383 * 12 11 10 14 14 C 1.39773 * 118.47095 * 359.45285 * 13 12 11 15 15 C 1.47675 * 120.65605 * 180.28322 * 14 13 12 16 16 C 1.39810 * 120.08747 * 129.98300 * 15 14 13 17 17 C 1.37784 * 119.99622 * 179.72916 * 16 15 14 18 18 C 1.38872 * 120.22235 * 0.57875 * 17 16 15 19 19 C 1.39595 * 120.06512 * 359.68381 * 18 17 16 20 20 C 1.38139 * 119.98419 * 0.02562 * 19 18 17 21 21 O 1.36515 * 108.58828 * 180.02562 * 19 18 17 22 22 C 1.43975 * 105.46908 * 342.68612 * 21 19 18 23 23 O 1.36422 * 131.36150 * 179.70911 * 18 17 16 24 24 H 0.97000 * 119.99300 * 0.02562 * 1 2 3 25 25 H 1.07998 * 119.32175 * 180.02562 * 11 10 9 26 26 H 1.08002 * 120.12857 * 179.97438 * 12 11 10 27 27 H 1.08000 * 120.76579 * 179.72279 * 13 12 11 28 28 H 1.08001 * 119.99752 * 359.97438 * 16 15 14 29 29 H 1.08007 * 119.88810 * 180.27493 * 17 16 15 30 30 H 1.07999 * 120.04599 * 180.02562 * 20 19 18 31 31 H 1.08999 * 110.56354 * 268.63598 * 22 21 19 32 32 H 1.09000 * 110.56582 * 145.78464 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3072 0.0000 0.0000 3 14 2.2412 1.6177 0.0000 4 1 2.4888 2.0462 -1.4001 5 1 1.4387 2.6527 0.6999 6 1 3.5388 1.4401 0.7001 7 6 2.0077 -1.2135 0.0005 8 1 3.0877 -1.2136 0.0001 9 6 1.3040 -2.4324 0.0005 10 7 -0.0333 -2.4311 0.0005 11 6 -0.7229 -3.5480 0.0000 12 6 -0.0925 -4.7878 -0.0010 13 6 1.2891 -4.8552 0.0043 14 6 2.0145 -3.6604 -0.0010 15 6 3.4911 -3.6761 -0.0019 16 6 4.1996 -2.9100 -0.9324 17 6 5.5774 -2.9216 -0.9279 18 6 6.2669 -3.7019 -0.0091 19 6 5.5655 -4.4734 0.9191 20 6 4.1841 -4.4613 0.9236 21 8 6.4655 -5.1396 1.7000 22 6 7.7110 -5.0882 0.9797 23 8 7.6032 -3.8873 0.1932 24 1 -0.4849 0.8401 -0.0004 25 1 -1.8019 -3.5033 -0.0004 26 1 -0.6795 -5.6944 -0.0010 27 1 1.7957 -5.8090 0.0081 28 1 3.6669 -2.3060 -1.6520 29 1 6.1230 -2.3257 -1.6447 30 1 3.6405 -5.0574 1.6415 31 1 7.8162 -5.9601 0.3341 32 1 8.5507 -5.0191 1.6712 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240899589.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:32 Heat of formation + Delta-G solvation = -2.258025 kcal Electronic energy + Delta-G solvation = -19535.146183 eV Core-core repulsion = 16426.675840 eV Total energy + Delta-G solvation = -3108.470343 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.084 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.73572 -38.62378 -36.88260 -35.94880 -33.79036 -31.72042 -30.47219 -29.90010 -28.18350 -25.87777 -25.43067 -22.93993 -22.42754 -21.32825 -20.56269 -17.72398 -17.41249 -17.30805 -16.88810 -15.89795 -15.58107 -14.59030 -14.36975 -14.13458 -14.00539 -13.43625 -13.43067 -12.84445 -12.67093 -12.44182 -12.31455 -12.16074 -11.69139 -11.29161 -11.20938 -11.11010 -10.66574 -10.52882 -10.38777 -9.81920 -9.49854 -8.57832 -8.23456 -7.87449 -7.70429 -7.19368 -6.54783 -4.63973 1.55982 1.76356 2.63637 2.86934 3.03263 3.06954 3.15253 3.17243 3.74405 3.85402 4.18619 4.63080 4.81613 4.94716 5.01109 5.51430 5.58676 5.69062 5.81413 5.85744 5.98697 6.01891 6.14425 6.42551 6.54595 6.57229 6.73474 6.79296 6.94316 6.99829 7.10087 7.24359 7.46287 7.59650 7.66219 7.92096 8.12501 8.50378 8.79036 9.96385 10.15221 Molecular weight = 269.08amu Principal moments of inertia in cm(-1) A = 0.017510 B = 0.006971 C = 0.005252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.656887 B = 4015.588950 C = 5330.388552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.705 5.705 2 C 0.068 3.932 3 Si 0.904 3.096 4 H -0.266 1.266 5 H -0.274 1.274 6 H -0.258 1.258 7 C -0.418 4.418 8 H 0.095 0.905 9 C 0.269 3.731 10 N -0.481 5.481 11 C 0.135 3.865 12 C -0.321 4.321 13 C -0.029 4.029 14 C -0.241 4.241 15 C 0.042 3.958 16 C -0.102 4.102 17 C -0.097 4.097 18 C -0.005 4.005 19 C 0.028 3.972 20 C -0.111 4.111 21 O -0.316 6.316 22 C 0.215 3.785 23 O -0.316 6.316 24 H 0.276 0.724 25 H 0.120 0.880 26 H 0.096 0.904 27 H 0.098 0.902 28 H 0.144 0.856 29 H 0.127 0.873 30 H 0.127 0.873 31 H 0.075 0.925 32 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.482 -4.762 -0.632 9.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.325 5.325 2 C -0.159 4.159 3 Si 0.727 3.273 4 H -0.191 1.191 5 H -0.199 1.199 6 H -0.182 1.182 7 C -0.448 4.448 8 H 0.113 0.887 9 C 0.146 3.854 10 N -0.192 5.192 11 C -0.034 4.034 12 C -0.344 4.344 13 C -0.053 4.053 14 C -0.246 4.246 15 C 0.041 3.959 16 C -0.120 4.120 17 C -0.116 4.116 18 C -0.048 4.048 19 C -0.016 4.016 20 C -0.130 4.130 21 O -0.232 6.232 22 C 0.102 3.898 23 O -0.233 6.233 24 H 0.087 0.913 25 H 0.137 0.863 26 H 0.114 0.886 27 H 0.116 0.884 28 H 0.162 0.838 29 H 0.145 0.855 30 H 0.145 0.855 31 H 0.093 0.907 32 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 8.071 -3.743 -0.480 8.910 hybrid contribution 0.959 -0.353 0.163 1.035 sum 9.030 -4.096 -0.317 9.921 Atomic orbital electron populations 1.70123 1.07328 1.28215 1.26838 1.26160 0.94906 1.01344 0.93512 0.86359 0.80759 0.80609 0.79551 1.19084 1.19930 1.18174 1.19847 0.95088 0.89261 1.40588 0.88680 1.18499 0.87965 0.90831 0.88062 1.68791 1.06974 1.26576 1.16883 1.22640 0.98886 0.88845 0.92991 1.21224 0.94548 0.97926 1.20708 1.20909 0.93809 0.95688 0.94912 1.19194 0.89945 0.94650 1.20838 1.18433 0.93015 0.92484 0.91940 1.21245 0.91579 0.99674 0.99496 1.19959 0.93545 1.00406 0.97696 1.19785 0.81618 1.03232 1.00209 1.19636 0.91786 0.97644 0.92539 1.20214 0.88339 1.03189 1.01261 1.87306 1.19042 1.74011 1.42884 1.25434 0.87844 0.87197 0.89301 1.87249 1.21719 1.43618 1.70709 0.91304 0.86269 0.88578 0.88422 0.83832 0.85481 0.85503 0.90724 0.86000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -17.91 11.46 55.56 0.64 -17.27 16 2 C 0.07 1.64 5.50 -17.32 -0.10 1.55 16 3 Si 0.90 17.94 29.56 -169.99 -5.02 12.92 16 4 H -0.27 -5.16 7.11 56.52 0.40 -4.75 16 5 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 6 H -0.26 -5.13 7.11 56.52 0.40 -4.73 16 7 C -0.42 -10.52 7.96 -37.93 -0.30 -10.83 16 8 H 0.10 2.26 5.25 -52.48 -0.28 1.99 16 9 C 0.27 6.96 6.56 -84.71 -0.56 6.40 16 10 N -0.48 -12.68 7.85 -10.90 -0.09 -12.77 16 11 C 0.14 3.14 11.17 -17.48 -0.20 2.94 16 12 C -0.32 -6.87 10.10 -39.23 -0.40 -7.26 16 13 C -0.03 -0.62 9.66 -38.97 -0.38 -1.00 16 14 C -0.24 -5.58 5.53 -104.08 -0.58 -6.16 16 15 C 0.04 0.88 5.02 -104.89 -0.53 0.35 16 16 C -0.10 -1.95 7.55 -39.16 -0.30 -2.24 16 17 C -0.10 -1.69 10.04 -39.51 -0.40 -2.08 16 18 C 0.00 -0.09 7.16 -38.84 -0.28 -0.37 16 19 C 0.03 0.51 7.14 -39.11 -0.28 0.23 16 20 C -0.11 -2.15 9.55 -39.05 -0.37 -2.52 16 21 O -0.32 -5.23 11.40 -45.74 -0.52 -5.76 16 22 C 0.21 2.72 8.88 101.05 0.90 3.62 16 23 O -0.32 -5.08 11.40 -45.43 -0.52 -5.60 16 24 H 0.28 6.34 8.29 -40.82 -0.34 6.00 16 25 H 0.12 2.43 8.06 -52.49 -0.42 2.01 16 26 H 0.10 1.79 8.06 -52.49 -0.42 1.36 16 27 H 0.10 1.84 8.06 -52.49 -0.42 1.42 16 28 H 0.14 2.74 7.26 -52.49 -0.38 2.36 16 29 H 0.13 1.86 8.06 -52.48 -0.42 1.44 16 30 H 0.13 2.34 8.05 -52.49 -0.42 1.92 16 31 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.12 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 282.18 15.07 4.25 4.25 Total: -1.00 -28.73 282.18 -7.76 -36.49 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: -2.75 Total: 5.10 kcal Atomic # 6 Polarization: -13.61 SS G_CDS: -3.75 Total: -17.36 kcal Atomic # 7 Polarization: -30.59 SS G_CDS: 0.55 Total: -30.04 kcal Atomic # 8 Polarization: -10.32 SS G_CDS: -1.04 Total: -11.36 kcal Atomic # 14 Polarization: 17.94 SS G_CDS: -5.02 Total: 12.92 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -28.73 -7.76 -36.49 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240899589.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.230 kcal (2) G-P(sol) polarization free energy of solvation -28.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds