Wall clock time and date at job start Mon Mar 30 2020 01:09:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86791 * 120.00169 * 2 1 4 4 H 1.48500 * 109.47065 * 270.00181 * 3 2 1 5 5 H 1.48497 * 109.47334 * 29.99841 * 3 2 1 6 6 H 1.48495 * 109.47418 * 150.00303 * 3 2 1 7 7 C 1.39933 * 119.99758 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99817 * 197.54811 * 7 2 1 9 9 C 1.41441 * 120.00459 * 17.54759 * 7 2 1 10 10 C 1.40814 * 120.60698 * 203.52076 * 9 7 2 11 11 N 1.31492 * 120.66740 * 179.97438 * 10 9 7 12 12 C 1.31940 * 122.12404 * 359.72114 * 11 10 9 13 13 C 1.39694 * 121.14503 * 0.54903 * 12 11 10 14 14 C 1.48387 * 120.40694 * 179.74684 * 13 12 11 15 15 C 1.39354 * 120.05185 * 179.69677 * 14 13 12 16 16 C 1.37980 * 120.02253 * 179.76741 * 15 14 13 17 17 C 1.38691 * 120.18431 * 0.49898 * 16 15 14 18 18 C 1.39387 * 120.01645 * 359.50058 * 17 16 15 19 19 C 1.38322 * 119.95081 * 0.25214 * 18 17 16 20 20 O 1.36532 * 108.62072 * 180.25109 * 18 17 16 21 21 C 1.43973 * 105.47962 * 342.69090 * 20 18 17 22 22 O 1.36512 * 131.37763 * 179.81613 * 17 16 15 23 23 C 1.39181 * 119.17765 * 359.46397 * 13 12 11 24 24 H 0.96998 * 120.00093 * 359.97438 * 1 2 3 25 25 H 1.07995 * 119.66278 * 359.97438 * 10 9 7 26 26 H 1.07998 * 119.42698 * 180.26713 * 12 11 10 27 27 H 1.07998 * 119.99018 * 0.02562 * 15 14 13 28 28 H 1.08005 * 119.90870 * 180.28070 * 16 15 14 29 29 H 1.08007 * 120.02973 * 179.97438 * 19 18 17 30 30 H 1.09000 * 110.57051 * 268.60876 * 21 20 18 31 31 H 1.09000 * 110.56905 * 145.74116 * 21 20 18 32 32 H 1.08002 * 120.95210 * 180.27164 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6176 0.0000 4 1 2.4897 2.0463 -1.4001 5 1 1.4398 2.6526 0.7000 6 1 3.5398 1.4401 0.6999 7 6 2.0079 -1.2119 -0.0005 8 1 3.0502 -1.2338 0.2815 9 6 1.3501 -2.4082 -0.3704 10 6 1.8304 -3.6563 0.0706 11 7 1.2195 -4.7691 -0.2721 12 6 0.1395 -4.7719 -1.0300 13 6 -0.4040 -3.5809 -1.5177 14 6 -1.6160 -3.6035 -2.3734 15 6 -2.1556 -2.4106 -2.8507 16 6 -3.2799 -2.4326 -3.6504 17 6 -3.8824 -3.6394 -3.9732 18 6 -3.3466 -4.8353 -3.4984 19 6 -2.2167 -4.8173 -2.7007 20 8 -4.1123 -5.8685 -3.9571 21 6 -5.3533 -5.2707 -4.3759 22 8 -4.9830 -3.9248 -4.7287 23 6 0.2020 -2.3727 -1.1861 24 1 -0.4850 0.8400 0.0004 25 1 2.7093 -3.6999 0.6966 26 1 -0.3299 -5.7114 -1.2814 27 1 -1.6913 -1.4689 -2.5981 28 1 -3.6939 -1.5073 -4.0230 29 1 -1.8007 -5.7432 -2.3318 30 1 -6.0726 -5.2678 -3.5570 31 1 -5.7585 -5.7957 -5.2410 32 1 -0.1965 -1.4348 -1.5437 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240900575.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:37 Heat of formation + Delta-G solvation = -13.596976 kcal Electronic energy + Delta-G solvation = -19172.066510 eV Core-core repulsion = 16063.104473 eV Total energy + Delta-G solvation = -3108.962037 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.084 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.94078 -38.81117 -37.17985 -36.12366 -34.19330 -31.93471 -30.69114 -30.02540 -28.13853 -25.81152 -25.56284 -23.19619 -22.93729 -21.27667 -20.67199 -17.79186 -17.74846 -17.08980 -17.04313 -16.07466 -15.57917 -15.27396 -14.65452 -14.21964 -13.93891 -13.65160 -13.26662 -13.04682 -12.93748 -12.83365 -12.40845 -12.30624 -11.70186 -11.51354 -11.33447 -11.16186 -10.83130 -10.76772 -10.56266 -9.98266 -9.47675 -8.97085 -8.35341 -8.19687 -7.91987 -7.19998 -6.93633 -4.59864 1.18334 1.51531 2.56287 2.78642 2.97375 2.99357 3.00662 3.11373 3.56115 3.78002 4.01417 4.52990 4.69430 4.71568 4.88059 5.30248 5.33972 5.38830 5.55582 5.57273 5.71320 5.94435 6.23029 6.32639 6.37797 6.48712 6.60255 6.62464 6.74719 6.95815 7.02101 7.12860 7.34846 7.56053 7.73272 7.80068 8.30042 8.55785 8.58598 9.51260 9.95242 Molecular weight = 269.08amu Principal moments of inertia in cm(-1) A = 0.025515 B = 0.005018 C = 0.004251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.142410 B = 5578.173705 C = 6584.615384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.790 5.790 2 C 0.075 3.925 3 Si 0.913 3.087 4 H -0.266 1.266 5 H -0.276 1.276 6 H -0.260 1.260 7 C -0.448 4.448 8 H 0.085 0.915 9 C 0.061 3.939 10 C -0.014 4.014 11 N -0.469 5.469 12 C -0.023 4.023 13 C -0.093 4.093 14 C 0.006 3.994 15 C -0.104 4.104 16 C -0.095 4.095 17 C 0.008 3.992 18 C 0.029 3.971 19 C -0.101 4.101 20 O -0.313 6.313 21 C 0.214 3.786 22 O -0.314 6.314 23 C -0.114 4.114 24 H 0.285 0.715 25 H 0.128 0.872 26 H 0.123 0.877 27 H 0.145 0.855 28 H 0.131 0.869 29 H 0.137 0.863 30 H 0.079 0.921 31 H 0.126 0.874 32 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.896 -1.917 -6.184 10.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C -0.144 4.144 3 Si 0.737 3.263 4 H -0.191 1.191 5 H -0.201 1.201 6 H -0.184 1.184 7 C -0.478 4.478 8 H 0.103 0.897 9 C 0.056 3.944 10 C -0.175 4.175 11 N -0.176 5.176 12 C -0.181 4.181 13 C -0.095 4.095 14 C 0.004 3.996 15 C -0.122 4.122 16 C -0.114 4.114 17 C -0.036 4.036 18 C -0.015 4.015 19 C -0.119 4.119 20 O -0.229 6.229 21 C 0.102 3.898 22 O -0.231 6.231 23 C -0.139 4.139 24 H 0.096 0.904 25 H 0.146 0.854 26 H 0.140 0.860 27 H 0.163 0.837 28 H 0.149 0.851 29 H 0.155 0.845 30 H 0.096 0.904 31 H 0.143 0.857 32 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -7.866 -2.663 -6.050 10.275 hybrid contribution -0.362 1.474 -0.317 1.551 sum -8.228 -1.189 -6.367 10.472 Atomic orbital electron populations 1.69774 1.07692 1.29805 1.34165 1.25973 0.94814 1.01668 0.91938 0.86215 0.80525 0.80019 0.79533 1.19068 1.20142 1.18380 1.19589 0.98276 0.90767 1.39138 0.89679 1.18473 0.92114 0.93787 0.89990 1.22587 1.02439 0.88010 1.04448 1.66955 1.07718 1.31991 1.10921 1.21799 0.96827 0.95383 1.04062 1.19310 0.94760 0.95728 0.99698 1.18666 0.94204 0.91296 0.95389 1.21183 0.94827 0.99189 0.96978 1.19970 0.96858 0.94483 1.00061 1.19784 0.91249 0.95108 0.97469 1.19623 0.96819 0.84873 1.00136 1.20126 0.94250 0.99404 0.98143 1.87330 1.26796 1.30357 1.78432 1.25504 0.86829 0.77626 0.99868 1.87302 1.43756 1.31567 1.60471 1.21841 0.97733 0.95996 0.98371 0.90407 0.85448 0.85960 0.83717 0.85076 0.84529 0.90372 0.85701 0.84764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -18.65 10.92 55.55 0.61 -18.05 16 2 C 0.07 1.73 5.18 -17.35 -0.09 1.64 16 3 Si 0.91 17.26 29.59 -169.99 -5.03 12.23 16 4 H -0.27 -4.98 7.11 56.52 0.40 -4.58 16 5 H -0.28 -5.14 7.11 56.52 0.40 -4.74 16 6 H -0.26 -4.88 7.11 56.52 0.40 -4.48 16 7 C -0.45 -10.99 9.08 -37.73 -0.34 -11.34 16 8 H 0.09 1.99 7.90 -52.49 -0.41 1.57 16 9 C 0.06 1.53 5.59 -106.71 -0.60 0.93 16 10 C -0.01 -0.33 10.96 -16.72 -0.18 -0.52 16 11 N -0.47 -11.33 10.32 -12.28 -0.13 -11.46 16 12 C -0.02 -0.52 10.60 -16.96 -0.18 -0.70 16 13 C -0.09 -2.07 5.88 -104.82 -0.62 -2.68 16 14 C 0.01 0.11 5.88 -104.90 -0.62 -0.51 16 15 C -0.10 -1.83 9.43 -39.26 -0.37 -2.20 16 16 C -0.10 -1.50 10.04 -39.51 -0.40 -1.90 16 17 C 0.01 0.12 7.15 -38.99 -0.28 -0.16 16 18 C 0.03 0.49 7.14 -39.12 -0.28 0.21 16 19 C -0.10 -1.78 9.44 -39.14 -0.37 -2.15 16 20 O -0.31 -4.72 11.40 -45.79 -0.52 -5.24 16 21 C 0.21 2.44 8.89 101.05 0.90 3.34 16 22 O -0.31 -4.60 11.40 -45.73 -0.52 -5.12 16 23 C -0.11 -2.75 8.16 -38.23 -0.31 -3.06 16 24 H 0.28 6.09 8.30 -40.82 -0.34 5.75 16 25 H 0.13 2.86 8.06 -52.49 -0.42 2.44 16 26 H 0.12 2.43 6.19 -52.49 -0.33 2.10 16 27 H 0.15 2.56 6.25 -52.49 -0.33 2.23 16 28 H 0.13 1.73 8.06 -52.48 -0.42 1.31 16 29 H 0.14 2.26 6.21 -52.48 -0.33 1.93 16 30 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.13 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.13 3.20 4.43 -52.49 -0.23 2.97 16 LS Contribution 280.07 15.07 4.22 4.22 Total: -1.00 -27.58 280.07 -7.56 -35.14 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: -2.45 Total: 7.37 kcal Atomic # 6 Polarization: -15.36 SS G_CDS: -3.73 Total: -19.09 kcal Atomic # 7 Polarization: -29.98 SS G_CDS: 0.48 Total: -29.50 kcal Atomic # 8 Polarization: -9.32 SS G_CDS: -1.04 Total: -10.37 kcal Atomic # 14 Polarization: 17.26 SS G_CDS: -5.03 Total: 12.23 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -27.58 -7.56 -35.14 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240900575.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.544 kcal (2) G-P(sol) polarization free energy of solvation -27.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds