Wall clock time and date at job start Mon Mar 30 2020 01:34:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31356 * 1 3 3 Si 1.86796 * 119.99834 * 2 1 4 4 H 1.48505 * 109.47374 * 0.02562 * 3 2 1 5 5 H 1.48500 * 109.47013 * 119.99966 * 3 2 1 6 6 H 1.48497 * 109.47417 * 240.00036 * 3 2 1 7 7 C 1.39074 * 120.00010 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00010 * 181.18811 * 7 2 1 9 9 N 1.36824 * 119.99872 * 1.18593 * 7 2 1 10 10 C 1.34775 * 119.99905 * 121.64097 * 9 7 2 11 11 O 1.21659 * 120.00238 * 183.63060 * 10 9 7 12 12 C 1.46951 * 119.99874 * 3.62298 * 10 9 7 13 13 C 1.31194 * 116.33624 * 164.94822 * 12 10 9 14 14 S 1.76172 * 122.63777 * 179.14382 * 13 12 10 15 15 O 1.42098 * 103.00265 * 126.67945 * 14 13 12 16 16 C 1.81874 * 102.09300 * 13.14615 * 14 13 12 17 17 C 1.53546 * 107.52800 * 314.16542 * 16 14 13 18 18 C 1.49008 * 116.33814 * 344.69144 * 12 10 9 19 19 C 1.46498 * 120.00075 * 301.63482 * 9 7 2 20 20 C 1.52998 * 117.50174 * 2.95318 * 19 9 7 21 21 C 1.52993 * 117.50185 * 294.29052 * 19 9 7 22 22 H 0.96994 * 120.00163 * 355.00623 * 1 2 3 23 23 H 1.08003 * 118.67680 * 359.16207 * 13 12 10 24 24 H 1.09005 * 109.84403 * 73.67408 * 16 14 13 25 25 H 1.08999 * 109.84648 * 194.65554 * 16 14 13 26 26 H 1.09006 * 109.49852 * 190.59686 * 17 16 14 27 27 H 1.09002 * 109.50092 * 310.67127 * 17 16 14 28 28 H 1.08999 * 108.77711 * 321.94951 * 18 12 10 29 29 H 1.08999 * 108.77926 * 80.13278 * 18 12 10 30 30 H 1.09003 * 115.54684 * 148.61605 * 19 9 7 31 31 H 1.09002 * 117.49817 * 359.97438 * 20 19 9 32 32 H 1.09002 * 117.50596 * 145.01733 * 20 19 9 33 33 H 1.09001 * 117.50282 * 214.97894 * 21 19 9 34 34 H 1.09003 * 117.49911 * 359.97438 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3136 0.0000 0.0000 3 14 2.2475 1.6177 0.0000 4 1 1.2825 2.7465 0.0006 5 1 3.1012 1.6964 1.2125 6 1 3.1012 1.6965 -1.2125 7 6 2.0089 -1.2044 -0.0005 8 1 3.0887 -1.2045 0.0189 9 7 1.3250 -2.3892 -0.0256 10 6 1.5362 -3.2682 -1.0252 11 8 0.8810 -4.2915 -1.0840 12 6 2.5578 -2.9903 -2.0443 13 6 2.9211 -4.0028 -2.7954 14 16 4.1157 -3.8513 -4.0814 15 8 5.0529 -4.8726 -3.7691 16 6 4.8509 -2.2255 -3.7289 17 6 3.7000 -1.2484 -3.4491 18 6 3.0602 -1.5891 -2.1120 19 6 0.3633 -2.7024 1.0342 20 6 0.1171 -1.6354 2.1028 21 6 0.9104 -2.8978 2.4495 22 1 -0.4850 0.8368 0.0731 23 1 2.4694 -4.9677 -2.6185 24 1 5.4989 -2.2941 -2.8551 25 1 5.4249 -1.8844 -4.5905 26 1 4.0867 -0.2297 -3.4194 27 1 2.9525 -1.3310 -4.2382 28 1 2.2269 -0.9088 -1.9361 29 1 3.8008 -1.4435 -1.3257 30 1 -0.4845 -3.3177 0.7328 31 1 0.6711 -0.7005 2.0175 32 1 -0.8923 -1.5490 2.5048 33 1 0.4224 -3.6415 3.0796 34 1 1.9860 -2.7937 2.5922 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001464503108.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:29 Heat of formation + Delta-G solvation = -25.546813 kcal Electronic energy + Delta-G solvation = -19300.933675 eV Core-core repulsion = 16326.897406 eV Total energy + Delta-G solvation = -2974.036269 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.087 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.18035 -38.27484 -37.37887 -36.76803 -34.99001 -33.38084 -32.52103 -28.53629 -26.86006 -25.18064 -23.03594 -22.69494 -21.80505 -20.57408 -18.95822 -18.03608 -17.66751 -17.06127 -16.62508 -16.09534 -15.92738 -15.65886 -15.52061 -14.95017 -14.86612 -14.30494 -14.12664 -13.80321 -13.37360 -13.31098 -12.89271 -12.83124 -12.54958 -12.21010 -12.08821 -12.04288 -11.86975 -11.40885 -11.23218 -11.11162 -10.63372 -10.57528 -10.31266 -9.27605 -9.07475 -8.23094 -6.21159 0.14553 1.03102 1.49605 1.51300 1.58973 1.69157 2.25942 2.32545 2.86703 2.95885 3.03279 3.33822 3.88632 4.03580 4.11909 4.17235 4.31933 4.37569 4.43018 4.61185 4.78180 4.81794 4.87562 4.97768 5.06546 5.19530 5.25692 5.35460 5.39139 5.51017 5.55730 5.89226 6.12555 6.36216 7.03242 7.39640 7.91718 8.73730 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.020614 B = 0.008170 C = 0.006289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.977210 B = 3426.270607 C = 4451.486658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.871 5.871 2 C 0.026 3.974 3 Si 0.962 3.038 4 H -0.285 1.285 5 H -0.273 1.273 6 H -0.239 1.239 7 C -0.364 4.364 8 H 0.098 0.902 9 N -0.408 5.408 10 C 0.472 3.528 11 O -0.636 6.636 12 C -0.023 4.023 13 C -0.499 4.499 14 S 1.400 4.600 15 O -0.932 6.932 16 C -0.446 4.446 17 C -0.102 4.102 18 C -0.105 4.105 19 C 0.063 3.937 20 C -0.117 4.117 21 C -0.199 4.199 22 H 0.275 0.725 23 H 0.118 0.882 24 H 0.072 0.928 25 H 0.158 0.842 26 H 0.098 0.902 27 H 0.103 0.897 28 H 0.115 0.885 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.100 0.900 32 H 0.088 0.912 33 H 0.103 0.897 34 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.393 5.376 -7.558 10.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.181 4.181 3 Si 0.784 3.216 4 H -0.210 1.210 5 H -0.198 1.198 6 H -0.162 1.162 7 C -0.492 4.492 8 H 0.115 0.885 9 N -0.124 5.124 10 C 0.262 3.738 11 O -0.526 6.526 12 C -0.028 4.028 13 C -0.616 4.616 14 S 1.599 4.401 15 O -0.927 6.927 16 C -0.584 4.584 17 C -0.140 4.140 18 C -0.141 4.141 19 C -0.042 4.042 20 C -0.155 4.155 21 C -0.237 4.237 22 H 0.085 0.915 23 H 0.136 0.864 24 H 0.092 0.908 25 H 0.175 0.825 26 H 0.117 0.883 27 H 0.122 0.878 28 H 0.133 0.867 29 H 0.101 0.899 30 H 0.098 0.902 31 H 0.118 0.882 32 H 0.107 0.893 33 H 0.121 0.879 34 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 5.087 4.354 -8.327 10.685 hybrid contribution 0.452 0.355 2.857 2.914 sum 5.539 4.709 -5.470 9.099 Atomic orbital electron populations 1.70074 1.07584 1.29169 1.43534 1.26278 0.95798 1.02081 0.93921 0.85462 0.78540 0.77035 0.80535 1.21001 1.19774 1.16172 1.19677 0.91973 0.82055 1.55460 0.88500 1.42925 1.35155 1.16213 1.18059 1.19922 0.86145 0.84398 0.83322 1.90572 1.53353 1.30628 1.78009 1.20801 0.92508 0.97319 0.92206 1.30157 1.14892 1.02452 1.14100 1.68130 0.87595 0.82189 1.02164 1.92947 1.63532 1.52900 1.83363 1.27750 1.06455 1.15126 1.09102 1.21423 0.95970 0.99782 0.96823 1.21149 1.02516 0.91506 0.98894 1.21360 0.95015 1.03338 0.84454 1.22857 0.99900 0.93623 0.99100 1.23393 0.99980 1.01942 0.98398 0.91522 0.86353 0.90850 0.82451 0.88311 0.87829 0.86723 0.89885 0.90238 0.88166 0.89314 0.87896 0.90025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -41.67 10.91 21.69 0.24 -41.43 16 2 C 0.03 1.15 3.03 84.96 0.26 1.41 16 3 Si 0.96 33.78 29.39 68.60 2.02 35.80 16 4 H -0.28 -10.18 7.11 99.48 0.71 -9.48 16 5 H -0.27 -9.65 7.11 99.48 0.71 -8.94 16 6 H -0.24 -7.44 7.11 99.48 0.71 -6.73 16 7 C -0.36 -16.71 4.90 84.12 0.41 -16.30 16 8 H 0.10 4.26 5.47 -2.91 -0.02 4.25 16 9 N -0.41 -20.57 2.71 -617.37 -1.67 -22.25 16 10 C 0.47 24.53 7.46 86.53 0.65 25.17 16 11 O -0.64 -37.02 15.68 -4.22 -0.07 -37.09 16 12 C -0.02 -0.96 5.71 -18.33 -0.10 -1.06 16 13 C -0.50 -19.17 9.47 67.59 0.64 -18.53 16 14 S 1.40 36.47 14.11 -56.49 -0.80 35.67 16 15 O -0.93 -36.75 17.87 -148.98 -2.66 -39.42 16 16 C -0.45 -9.51 6.52 72.17 0.47 -9.04 16 17 C -0.10 -2.30 5.84 30.48 0.18 -2.12 16 18 C -0.10 -3.60 3.61 29.03 0.10 -3.50 16 19 C 0.06 3.09 5.61 44.99 0.25 3.35 16 20 C -0.12 -5.03 8.22 30.62 0.25 -4.78 16 21 C -0.20 -8.18 10.36 30.62 0.32 -7.86 16 22 H 0.27 12.47 8.31 -92.71 -0.77 11.70 16 23 H 0.12 5.27 7.15 -2.91 -0.02 5.25 16 24 H 0.07 1.90 8.11 -2.38 -0.02 1.88 16 25 H 0.16 2.02 8.14 -2.39 -0.02 2.00 16 26 H 0.10 1.87 8.14 -2.38 -0.02 1.85 16 27 H 0.10 1.80 8.07 -2.39 -0.02 1.78 16 28 H 0.11 4.46 5.05 -2.39 -0.01 4.45 16 29 H 0.08 2.94 6.02 -2.39 -0.01 2.92 16 30 H 0.08 4.17 7.76 -2.39 -0.02 4.15 16 31 H 0.10 4.57 5.35 -2.39 -0.01 4.55 16 32 H 0.09 3.50 8.14 -2.39 -0.02 3.48 16 33 H 0.10 3.68 8.14 -2.39 -0.02 3.66 16 34 H 0.08 3.40 8.14 -2.39 -0.02 3.38 16 Total: -1.00 -73.43 284.72 1.60 -71.83 By element: Atomic # 1 Polarization: 29.03 SS G_CDS: 1.12 Total: 30.15 kcal Atomic # 6 Polarization: -36.70 SS G_CDS: 3.42 Total: -33.27 kcal Atomic # 7 Polarization: -62.24 SS G_CDS: -1.44 Total: -63.68 kcal Atomic # 8 Polarization: -73.77 SS G_CDS: -2.73 Total: -76.50 kcal Atomic # 14 Polarization: 33.78 SS G_CDS: 2.02 Total: 35.80 kcal Atomic # 16 Polarization: 36.47 SS G_CDS: -0.80 Total: 35.67 kcal Total: -73.43 1.60 -71.83 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001464503108.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.287 kcal (2) G-P(sol) polarization free energy of solvation -73.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds