Wall clock time and date at job start Mon Mar 30 2020 01:36:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86806 * 120.00058 * 2 1 4 4 H 1.48494 * 109.47164 * 179.97438 * 3 2 1 5 5 H 1.48507 * 109.46812 * 299.99453 * 3 2 1 6 6 H 1.48494 * 109.47320 * 59.99268 * 3 2 1 7 7 C 1.37874 * 120.00108 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00034 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99821 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47387 * 179.97438 * 9 7 2 11 11 C 1.52993 * 109.47360 * 179.97438 * 10 9 7 12 12 N 1.46905 * 109.47039 * 180.02562 * 11 10 9 13 13 C 1.46901 * 110.99870 * 180.02562 * 12 11 10 14 14 C 1.50697 * 109.46943 * 180.02562 * 13 12 11 15 15 C 1.32738 * 124.70363 * 90.00092 * 14 13 12 16 16 C 1.44466 * 113.09209 * 179.97438 * 15 14 13 17 17 C 1.47027 * 123.48079 * 179.97438 * 16 15 14 18 18 O 1.21560 * 119.99631 * 359.97438 * 17 16 15 19 19 O 1.34793 * 120.00421 * 179.97438 * 17 16 15 20 20 C 1.36113 * 113.04745 * 359.97438 * 16 15 14 21 21 S 1.70449 * 110.80417 * 359.76634 * 20 16 15 22 22 H 0.97004 * 119.99990 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.47558 * 59.99970 * 9 7 2 24 24 H 1.08998 * 109.47216 * 299.99633 * 9 7 2 25 25 H 1.09001 * 109.46514 * 59.99676 * 10 9 7 26 26 H 1.08998 * 109.46924 * 300.00156 * 10 9 7 27 27 H 1.09001 * 109.47393 * 60.00433 * 11 10 9 28 28 H 1.08998 * 109.47408 * 300.00078 * 11 10 9 29 29 H 1.00901 * 110.99869 * 56.04956 * 12 11 10 30 30 H 1.09004 * 109.47031 * 299.99620 * 13 12 11 31 31 H 1.08995 * 109.47111 * 59.99900 * 13 12 11 32 32 H 1.08004 * 123.45409 * 359.97438 * 15 14 13 33 33 H 0.96701 * 117.00312 * 179.97438 * 19 17 16 34 34 H 1.07996 * 124.59563 * 180.02562 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3966 1.2123 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4802 -4.9870 0.0012 12 7 2.4348 -6.1036 0.0018 13 6 1.7345 -7.3950 0.0018 14 6 2.7440 -8.5138 0.0031 15 6 3.2494 -9.0745 1.0950 16 6 4.1971 -10.1257 0.8054 17 6 4.8942 -10.8981 1.8442 18 8 4.6847 -10.6644 3.0187 19 8 5.7654 -11.8653 1.4945 20 6 4.3782 -10.3273 -0.5285 21 16 3.4082 -9.2618 -1.4390 22 1 -0.4850 0.8401 -0.0004 23 1 0.6246 -2.5571 -0.8897 24 1 0.6240 -2.5567 0.8903 25 1 2.8718 -3.6043 0.8905 26 1 2.8718 -3.6043 -0.8894 27 1 0.8533 -5.0451 -0.8886 28 1 0.8538 -5.0445 0.8913 29 1 3.0696 -6.0362 0.7832 30 1 1.1093 -7.4692 0.8916 31 1 1.1100 -7.4696 -0.8883 32 1 2.9797 -8.7754 2.0971 33 1 6.1996 -12.3457 2.2126 34 1 5.0430 -11.0653 -0.9524 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601065754.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:25 Heat of formation + Delta-G solvation = -78.022481 kcal Electronic energy + Delta-G solvation = -16847.350418 eV Core-core repulsion = 13871.038633 eV Total energy + Delta-G solvation = -2976.311785 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.087 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.44317 -37.94427 -36.37591 -36.13543 -33.66143 -31.88475 -30.02140 -26.78592 -25.76581 -24.69377 -22.31772 -21.57942 -20.16666 -19.69487 -18.32530 -17.53014 -16.76439 -16.27728 -15.91726 -15.53742 -14.74732 -14.57311 -14.30832 -13.88452 -13.71875 -13.05975 -12.95236 -12.69695 -12.35222 -11.92773 -11.85100 -11.65446 -11.48923 -11.28738 -10.85666 -10.73703 -10.59441 -10.48860 -9.71024 -9.44537 -9.17696 -9.02461 -8.77176 -8.34306 -8.27784 -5.99122 -4.01073 0.36652 1.20318 1.51575 1.64954 2.76397 2.81410 3.32120 3.39521 3.44192 4.31258 4.47027 4.55905 4.82250 4.92221 5.07254 5.22155 5.36939 5.44784 5.60491 5.72054 5.79565 5.85679 6.03043 6.14489 6.28412 6.68325 6.71350 7.12179 7.22458 7.51510 7.59799 7.69128 7.83342 8.01318 8.44594 9.06397 9.63088 11.12389 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.034078 B = 0.002728 C = 0.002649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.454564 B =10262.841410 C =10565.788367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.518 4.518 8 H 0.056 0.944 9 C 0.022 3.978 10 C -0.107 4.107 11 C 0.059 3.941 12 N -0.688 5.688 13 C 0.125 3.875 14 C -0.188 4.188 15 C -0.088 4.088 16 C -0.154 4.154 17 C 0.547 3.453 18 O -0.514 6.514 19 O -0.515 6.515 20 C -0.192 4.192 21 S 0.235 5.765 22 H 0.259 0.741 23 H 0.016 0.984 24 H 0.014 0.986 25 H 0.045 0.955 26 H 0.057 0.943 27 H 0.069 0.931 28 H 0.027 0.973 29 H 0.342 0.658 30 H 0.051 0.949 31 H 0.085 0.915 32 H 0.154 0.846 33 H 0.414 0.586 34 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.634 -24.755 -1.232 25.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.556 4.556 8 H 0.074 0.926 9 C -0.016 4.016 10 C -0.145 4.145 11 C -0.070 4.070 12 N -0.319 5.319 13 C -0.005 4.005 14 C -0.306 4.306 15 C -0.116 4.116 16 C -0.170 4.170 17 C 0.389 3.611 18 O -0.403 6.403 19 O -0.327 6.327 20 C -0.331 4.331 21 S 0.503 5.497 22 H 0.069 0.931 23 H 0.034 0.966 24 H 0.032 0.968 25 H 0.064 0.936 26 H 0.075 0.925 27 H 0.088 0.912 28 H 0.046 0.954 29 H 0.160 0.840 30 H 0.069 0.931 31 H 0.103 0.897 32 H 0.171 0.829 33 H 0.273 0.727 34 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 7.077 -24.106 -3.483 25.364 hybrid contribution 0.730 0.262 2.997 3.096 sum 7.807 -23.844 -0.486 25.094 Atomic orbital electron populations 1.69975 1.06066 1.26458 1.51135 1.25033 0.94852 0.99293 0.95387 0.86539 0.80161 0.83790 0.77549 1.19708 1.21011 1.21055 1.21294 0.93110 0.91036 1.50201 0.92604 1.19072 0.94006 0.91368 0.97145 1.21626 0.99216 0.92804 1.00851 1.22170 0.94061 0.90563 1.00174 1.60629 1.20393 1.00546 1.50340 1.20402 0.92051 0.86033 1.02062 1.24377 1.06090 1.04185 0.95933 1.20951 0.95929 0.94736 1.00008 1.19219 1.04393 1.02195 0.91238 1.20170 0.76265 0.77226 0.87411 1.90921 1.62852 1.66558 1.20006 1.84561 1.55209 1.48089 1.44861 1.25970 1.04706 1.04746 0.97651 1.83279 1.33509 1.25152 1.07774 0.93089 0.96550 0.96770 0.93576 0.92470 0.91238 0.95438 0.84031 0.93073 0.89681 0.82891 0.72738 0.80514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.12 13.29 55.43 0.74 -26.38 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 4 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 5 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 7 C -0.52 -14.80 9.11 -34.44 -0.31 -15.12 16 8 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 9 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 10 C -0.11 -2.19 5.41 -26.73 -0.14 -2.33 16 11 C 0.06 0.97 5.69 -3.82 -0.02 0.95 16 12 N -0.69 -9.59 6.49 -115.06 -0.75 -10.33 16 13 C 0.13 1.42 6.14 -4.98 -0.03 1.39 16 14 C -0.19 -1.99 5.95 -36.19 -0.22 -2.20 16 15 C -0.09 -0.96 9.95 -39.01 -0.39 -1.35 16 16 C -0.15 -1.61 5.98 -104.65 -0.63 -2.24 16 17 C 0.55 5.86 8.30 34.29 0.28 6.14 16 18 O -0.51 -7.05 17.58 -19.31 -0.34 -7.39 16 19 O -0.52 -3.77 13.08 -40.74 -0.53 -4.30 16 20 C -0.19 -1.64 10.56 29.97 0.32 -1.32 16 21 S 0.24 2.05 23.00 -107.50 -2.47 -0.43 16 22 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 23 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 26 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 27 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 28 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.34 4.64 8.72 -39.29 -0.34 4.30 16 30 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 32 H 0.15 1.67 8.06 -52.48 -0.42 1.25 16 33 H 0.41 1.18 9.11 45.56 0.42 1.60 16 34 H 0.18 1.12 8.02 -52.49 -0.42 0.70 16 LS Contribution 316.91 15.07 4.78 4.78 Total: -1.00 -33.14 316.91 -8.67 -41.81 By element: Atomic # 1 Polarization: 3.30 SS G_CDS: -3.69 Total: -0.39 kcal Atomic # 6 Polarization: -12.79 SS G_CDS: -1.38 Total: -14.16 kcal Atomic # 7 Polarization: -36.71 SS G_CDS: -0.01 Total: -36.72 kcal Atomic # 8 Polarization: -10.81 SS G_CDS: -0.87 Total: -11.69 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Atomic # 16 Polarization: 2.05 SS G_CDS: -2.47 Total: -0.43 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -33.14 -8.67 -41.81 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601065754.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.213 kcal (2) G-P(sol) polarization free energy of solvation -33.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds