Wall clock time and date at job start Mon Mar 30 2020 01:30:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35782 * 116.99809 * 2 1 4 4 C 1.40348 * 120.90513 * 90.00707 * 3 2 1 5 5 O 1.35557 * 120.48427 * 359.97438 * 4 3 2 6 6 N 1.32398 * 119.02322 * 180.02562 * 4 3 2 7 7 C 1.32496 * 120.98021 * 359.97438 * 6 4 3 8 8 O 1.35545 * 118.99259 * 179.97438 * 7 6 4 9 9 N 1.31855 * 122.01278 * 0.26427 * 7 6 4 10 10 C 1.33526 * 120.86734 * 359.48030 * 9 7 6 11 11 C 1.48069 * 120.53589 * 180.25862 * 10 9 7 12 12 O 1.21531 * 119.99993 * 180.24745 * 11 10 9 13 13 N 1.34777 * 120.00032 * 0.24425 * 11 10 9 14 14 C 1.46503 * 119.99876 * 180.02562 * 13 11 10 15 15 C 1.50696 * 109.47011 * 180.02562 * 14 13 11 16 16 H 1.07999 * 120.00076 * 359.97438 * 15 14 13 17 17 C 1.37879 * 119.99992 * 180.02562 * 15 14 13 18 18 N 1.31509 * 119.99881 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 119.99923 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47452 * 89.99591 * 19 17 15 21 21 H 1.48498 * 109.47277 * 209.99797 * 19 17 15 22 22 H 1.48500 * 109.47273 * 329.99602 * 19 17 15 23 23 H 1.09004 * 109.47515 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.47251 * 299.99622 * 1 2 3 25 25 H 1.08994 * 109.47515 * 59.99548 * 1 2 3 26 26 H 0.96702 * 113.99816 * 270.01886 * 5 4 3 27 27 H 0.96696 * 114.00039 * 90.00461 * 8 7 6 28 28 H 0.96999 * 120.00061 * 0.02562 * 13 11 10 29 29 H 1.09000 * 109.47303 * 300.00372 * 14 13 11 30 30 H 1.09000 * 109.47061 * 60.00198 * 14 13 11 31 31 H 0.97006 * 119.99854 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2098 0.0000 4 6 2.3728 1.8521 1.2042 5 8 2.0778 1.2739 2.3943 6 7 2.9730 3.0314 1.1607 7 6 3.2654 3.6056 0.0030 8 8 3.8798 4.8138 0.0055 9 7 2.9719 3.0402 -1.1515 10 6 2.3710 1.8487 -1.1976 11 6 2.0500 1.2179 -2.4982 12 8 1.4988 0.1351 -2.5288 13 7 2.3689 1.8444 -3.6480 14 6 2.0508 1.2205 -4.9348 15 6 2.5086 2.1183 -6.0552 16 1 2.9882 3.0597 -5.8312 17 6 2.3143 1.7385 -7.3663 18 7 1.7298 0.5924 -7.6391 19 14 2.8811 2.8517 -8.7551 20 1 4.2787 2.5109 -9.1237 21 1 1.9980 2.6617 -9.9337 22 1 2.8174 4.2676 -8.3119 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 1.2051 1.5072 2.7393 27 1 4.8454 4.7640 0.0064 28 1 2.8091 2.7085 -3.6236 29 1 2.5600 0.2596 -5.0085 30 1 0.9740 1.0677 -5.0081 31 1 1.5928 0.3253 -8.5615 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001634242615.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:45 Heat of formation + Delta-G solvation = -122.617950 kcal Electronic energy + Delta-G solvation = -20290.453799 eV Core-core repulsion = 16765.914995 eV Total energy + Delta-G solvation = -3524.538804 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.089 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.87003 -40.56609 -39.90238 -38.69057 -37.81561 -36.24156 -34.83988 -34.18560 -31.52895 -29.65576 -28.03718 -26.74437 -25.03915 -24.41718 -22.24238 -20.79642 -20.20568 -19.55411 -18.99100 -18.86185 -17.68008 -17.46386 -16.95757 -16.67231 -16.24471 -16.12385 -16.02054 -15.29125 -14.80576 -14.39369 -14.05297 -13.98912 -13.81326 -13.37858 -12.96937 -12.89996 -12.72163 -12.40671 -12.25099 -12.00785 -11.76926 -11.51316 -11.41583 -10.81457 -10.45333 -10.26162 -9.92736 -8.29560 -6.45589 -1.02168 -0.69230 1.42256 1.44444 1.46533 1.47435 1.58129 2.03908 2.07791 2.24708 2.39274 2.42071 3.05834 3.09753 3.42398 3.68342 4.05429 4.26670 4.42470 4.56228 4.77055 5.04004 5.12348 5.20567 5.37254 5.59893 5.80930 6.00603 6.31471 6.41398 6.46244 6.60998 6.71793 7.11194 7.29169 8.82340 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.025248 B = 0.004857 C = 0.004125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.739681 B = 5763.895097 C = 6786.710815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.316 6.316 3 C 0.025 3.975 4 C 0.389 3.611 5 O -0.456 6.456 6 N -0.524 5.524 7 C 0.517 3.483 8 O -0.450 6.450 9 N -0.502 5.502 10 C 0.138 3.862 11 C 0.548 3.452 12 O -0.548 6.548 13 N -0.680 5.680 14 C 0.265 3.735 15 C -0.559 4.559 16 H 0.080 0.920 17 C 0.010 3.990 18 N -0.927 5.927 19 Si 0.983 3.017 20 H -0.271 1.271 21 H -0.282 1.282 22 H -0.258 1.258 23 H 0.115 0.885 24 H 0.079 0.921 25 H 0.031 0.969 26 H 0.434 0.566 27 H 0.438 0.562 28 H 0.412 0.588 29 H -0.001 1.001 30 H 0.001 0.999 31 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.529 5.823 18.784 19.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.230 6.230 3 C -0.027 4.027 4 C 0.196 3.804 5 O -0.267 6.267 6 N -0.263 5.263 7 C 0.212 3.788 8 O -0.257 6.257 9 N -0.233 5.233 10 C -0.008 4.008 11 C 0.331 3.669 12 O -0.425 6.425 13 N -0.329 5.329 14 C 0.143 3.857 15 C -0.597 4.597 16 H 0.098 0.902 17 C -0.191 4.191 18 N -0.565 5.565 19 Si 0.806 3.194 20 H -0.196 1.196 21 H -0.207 1.207 22 H -0.182 1.182 23 H 0.134 0.866 24 H 0.098 0.902 25 H 0.050 0.950 26 H 0.299 0.701 27 H 0.302 0.698 28 H 0.249 0.751 29 H 0.017 0.983 30 H 0.019 0.981 31 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.571 5.620 18.536 19.378 hybrid contribution -0.115 -0.028 -0.794 0.803 sum 0.456 5.592 17.742 18.608 Atomic orbital electron populations 1.23222 0.75933 1.05452 1.00941 1.86061 1.22216 1.21122 1.93553 1.20547 1.00607 0.89967 0.91613 1.19418 0.90014 0.85137 0.85794 1.84759 1.42915 1.67494 1.31535 1.67471 1.16270 1.10687 1.31857 1.19782 0.91872 0.85567 0.81555 1.84733 1.27753 1.18459 1.94741 1.67970 1.14699 1.09303 1.31338 1.21841 0.94859 0.89733 0.94316 1.17970 0.80468 0.85006 0.83489 1.90789 1.43577 1.21150 1.87033 1.46172 1.57794 1.23393 1.05558 1.18745 0.94665 0.93199 0.79079 1.21564 1.41018 1.06011 0.91063 0.90191 1.25974 0.94503 0.96812 1.01763 1.70112 1.42712 1.22916 1.20809 0.85184 0.78137 0.78913 0.77178 1.19603 1.20749 1.18205 0.86647 0.90232 0.95016 0.70097 0.69768 0.75108 0.98303 0.98092 0.92124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.85 10.55 113.37 1.20 2.05 16 2 O -0.32 -9.55 8.78 -64.61 -0.57 -10.11 16 3 C 0.03 0.74 5.81 23.11 0.13 0.87 16 4 C 0.39 9.17 7.86 85.12 0.67 9.84 16 5 O -0.46 -7.76 13.42 -76.78 -1.03 -8.79 16 6 N -0.52 -12.74 10.46 -425.94 -4.46 -17.19 16 7 C 0.52 13.06 8.69 180.65 1.57 14.64 16 8 O -0.45 -8.70 13.64 -88.50 -1.21 -9.91 16 9 N -0.50 -15.21 9.72 -302.82 -2.94 -18.15 16 10 C 0.14 4.68 6.79 41.82 0.28 4.96 16 11 C 0.55 23.20 7.82 86.85 0.68 23.88 16 12 O -0.55 -26.14 14.21 16.65 0.24 -25.91 16 13 N -0.68 -30.36 5.54 -469.49 -2.60 -32.96 16 14 C 0.26 14.43 5.43 85.63 0.46 14.89 16 15 C -0.56 -30.47 9.28 25.60 0.24 -30.23 16 16 H 0.08 4.03 7.60 -2.91 -0.02 4.01 16 17 C 0.01 0.53 5.46 84.66 0.46 0.99 16 18 N -0.93 -54.93 13.29 21.45 0.28 -54.65 16 19 Si 0.98 42.19 29.54 68.60 2.03 44.21 16 20 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 21 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 22 H -0.26 -10.44 7.11 99.48 0.71 -9.74 16 23 H 0.12 2.26 8.14 -2.39 -0.02 2.24 16 24 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 25 H 0.03 0.87 7.55 -2.39 -0.02 0.85 16 26 H 0.43 2.24 9.06 -74.06 -0.67 1.57 16 27 H 0.44 3.65 9.06 -74.06 -0.67 2.98 16 28 H 0.41 16.62 7.70 -92.71 -0.71 15.91 16 29 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 30 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 31 H 0.27 14.91 8.31 -92.70 -0.77 14.14 16 Total: -1.00 -74.93 289.44 -5.38 -80.31 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: -0.82 Total: 11.26 kcal Atomic # 6 Polarization: 36.20 SS G_CDS: 5.70 Total: 41.90 kcal Atomic # 7 Polarization: -113.24 SS G_CDS: -9.71 Total: -122.95 kcal Atomic # 8 Polarization: -52.16 SS G_CDS: -2.57 Total: -54.72 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 2.03 Total: 44.21 kcal Total: -74.93 -5.38 -80.31 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001634242615.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.307 kcal (2) G-P(sol) polarization free energy of solvation -74.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds