Wall clock time and date at job start Mon Mar 30 2020 01:34:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46497 * 109.47226 * 2 1 4 4 C 1.46507 * 119.99569 * 274.99941 * 3 2 1 5 5 C 1.50696 * 109.47095 * 274.99326 * 4 3 2 6 6 H 1.08003 * 119.99671 * 0.02562 * 5 4 3 7 7 C 1.37874 * 119.99933 * 179.97438 * 5 4 3 8 8 N 1.31511 * 120.00378 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99932 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.46928 * 0.02562 * 9 7 5 11 11 H 1.48494 * 109.47368 * 120.00378 * 9 7 5 12 12 H 1.48500 * 109.47267 * 240.00544 * 9 7 5 13 13 S 1.65596 * 120.00152 * 94.99477 * 3 2 1 14 14 O 1.42108 * 106.39978 * 156.46361 * 13 3 2 15 15 O 1.42098 * 106.40293 * 23.54347 * 13 3 2 16 16 C 1.76199 * 107.22090 * 269.99963 * 13 3 2 17 17 C 1.38238 * 119.99628 * 90.00268 * 16 13 3 18 18 C 1.38235 * 119.99712 * 179.97438 * 17 16 13 19 19 C 1.38234 * 120.00220 * 359.97124 * 18 17 16 20 20 C 1.38233 * 120.00037 * 0.28719 * 19 18 17 21 21 C 1.38234 * 120.00344 * 269.98102 * 16 13 3 22 22 H 1.09003 * 109.47395 * 60.00330 * 1 2 3 23 23 H 1.09003 * 109.47196 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47643 * 300.00051 * 1 2 3 25 25 H 1.09002 * 109.47119 * 239.99470 * 2 1 3 26 26 H 1.09001 * 109.46978 * 119.99352 * 2 1 3 27 27 H 1.08997 * 109.47256 * 35.00321 * 4 3 2 28 28 H 1.09008 * 109.46640 * 154.99841 * 4 3 2 29 29 H 0.97001 * 120.00516 * 179.97438 * 8 7 5 30 30 H 1.08005 * 120.00068 * 359.97438 * 17 16 13 31 31 H 1.07999 * 119.99770 * 179.97438 * 18 17 16 32 32 H 1.08002 * 119.99744 * 180.02562 * 19 18 17 33 33 H 1.07998 * 120.00395 * 179.72811 * 20 19 18 34 34 H 1.07999 * 119.99968 * 359.97438 * 21 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1582 2.1086 -1.2640 5 6 3.4948 1.7888 -1.8823 6 1 4.1721 1.1111 -1.3838 7 6 3.8525 2.3605 -3.0849 8 7 3.0276 3.1852 -3.6922 9 14 5.5090 1.9635 -3.8517 10 1 6.2450 1.0157 -2.9769 11 1 5.3015 1.3457 -5.1860 12 1 6.2971 3.2130 -4.0019 13 16 2.4121 2.1202 1.4286 14 8 3.3283 3.1571 1.1048 15 8 2.7094 1.0800 2.3499 16 6 0.9554 2.9119 2.0252 17 6 0.0876 2.2276 2.8556 18 6 -1.0550 2.8489 3.3241 19 6 -1.3294 4.1546 2.9627 20 6 -0.4644 4.8371 2.1280 21 6 0.6806 4.2174 1.6632 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8899 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5137 0.8901 27 1 1.3617 1.8096 -1.9453 28 1 2.0921 3.1802 -1.0757 29 1 3.2794 3.5877 -4.5380 30 1 0.3022 1.2076 3.1384 31 1 -1.7332 2.3141 3.9725 32 1 -2.2219 4.6401 3.3290 33 1 -0.6810 5.8558 1.8420 34 1 1.3590 4.7523 1.0151 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000033466468.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:01 Heat of formation + Delta-G solvation = -71.428365 kcal Electronic energy + Delta-G solvation = -18998.436741 eV Core-core repulsion = 16022.410898 eV Total energy + Delta-G solvation = -2976.025843 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.087 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.01132 -38.31426 -37.69590 -36.85603 -34.71969 -32.24757 -32.01132 -31.50535 -28.51459 -24.95648 -24.22569 -23.67557 -23.16408 -19.96089 -19.15736 -18.37529 -18.32924 -17.28929 -16.93244 -16.48530 -15.91197 -15.53182 -15.31395 -14.82006 -14.65427 -14.47235 -14.06057 -13.85328 -13.55354 -13.38990 -13.19701 -13.11284 -13.03097 -12.74658 -12.69001 -12.24595 -12.21210 -12.16116 -11.78469 -11.69336 -11.56136 -10.59772 -10.36642 -10.01036 -9.77581 -8.20102 -6.31737 -0.55661 -0.13683 0.32588 1.38809 1.41340 1.53113 2.07481 2.41595 2.60321 2.87516 3.10902 3.34526 3.86920 3.97719 3.99826 4.11913 4.40692 4.42587 4.45475 4.51358 4.69929 4.71943 4.97939 5.02596 5.11734 5.16476 5.18166 5.29368 5.38274 5.40603 5.51778 5.71671 5.90834 5.94154 6.10872 6.76570 7.36974 8.87805 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.025199 B = 0.006474 C = 0.006152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.879437 B = 4323.800143 C = 4550.423893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.106 3.894 3 N -0.988 5.988 4 C 0.273 3.727 5 C -0.547 4.547 6 H 0.053 0.947 7 C 0.012 3.988 8 N -0.924 5.924 9 Si 0.957 3.043 10 H -0.270 1.270 11 H -0.269 1.269 12 H -0.279 1.279 13 S 2.686 3.314 14 O -0.993 6.993 15 O -0.989 6.989 16 C -0.680 4.680 17 C -0.036 4.036 18 C -0.138 4.138 19 C -0.060 4.060 20 C -0.143 4.143 21 C -0.046 4.046 22 H 0.049 0.951 23 H 0.092 0.908 24 H 0.058 0.942 25 H 0.078 0.922 26 H 0.090 0.910 27 H 0.030 0.970 28 H 0.016 0.984 29 H 0.267 0.733 30 H 0.146 0.854 31 H 0.168 0.832 32 H 0.171 0.829 33 H 0.155 0.845 34 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.130 -1.468 12.087 17.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.019 4.019 3 N -0.827 5.827 4 C 0.150 3.850 5 C -0.587 4.587 6 H 0.071 0.929 7 C -0.187 4.187 8 N -0.564 5.564 9 Si 0.782 3.218 10 H -0.194 1.194 11 H -0.194 1.194 12 H -0.205 1.205 13 S 2.781 3.219 14 O -0.984 6.984 15 O -0.979 6.979 16 C -0.770 4.770 17 C -0.055 4.055 18 C -0.156 4.156 19 C -0.078 4.078 20 C -0.162 4.162 21 C -0.065 4.065 22 H 0.068 0.932 23 H 0.111 0.889 24 H 0.077 0.923 25 H 0.097 0.903 26 H 0.108 0.892 27 H 0.048 0.952 28 H 0.034 0.966 29 H 0.076 0.924 30 H 0.164 0.836 31 H 0.186 0.814 32 H 0.188 0.812 33 H 0.173 0.827 34 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -11.314 -1.396 12.302 16.772 hybrid contribution 0.526 0.339 -0.876 1.076 sum -10.788 -1.057 11.427 15.750 Atomic orbital electron populations 1.22218 0.94660 1.03532 1.02038 1.21453 0.95347 0.81167 1.03887 1.57289 1.81889 1.22549 1.20937 1.18614 0.95963 0.90374 0.80085 1.21858 1.03210 1.27619 1.05976 0.92919 1.25735 1.00871 0.94698 0.97394 1.70013 1.37698 1.31054 1.17675 0.85523 0.79599 0.78210 0.78471 1.19440 1.19445 1.20505 1.01651 0.74877 0.72931 0.72459 1.93529 1.61735 1.59054 1.84033 1.93454 1.84251 1.57084 1.63113 1.30768 1.23646 1.07401 1.15208 1.21184 0.92653 0.99868 0.91799 1.21727 0.97013 0.95942 1.00943 1.21961 0.98747 0.94126 0.92953 1.21645 0.93939 1.01845 0.98772 1.21098 0.97283 0.92527 0.95626 0.93190 0.88922 0.92307 0.90311 0.89212 0.95238 0.96616 0.92368 0.83601 0.81417 0.81195 0.82720 0.86143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.51 10.24 71.98 0.74 -3.78 16 2 C 0.11 3.68 6.40 86.38 0.55 4.23 16 3 N -0.99 -42.27 2.77 -519.84 -1.44 -43.71 16 4 C 0.27 14.13 5.10 85.63 0.44 14.57 16 5 C -0.55 -31.48 9.38 25.60 0.24 -31.24 16 6 H 0.05 3.04 7.81 -2.91 -0.02 3.02 16 7 C 0.01 0.71 5.46 84.65 0.46 1.17 16 8 N -0.92 -54.64 13.29 21.45 0.28 -54.35 16 9 Si 0.96 45.13 29.54 68.60 2.03 47.16 16 10 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 11 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 12 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 13 S 2.69 112.68 5.65 -56.49 -0.32 112.36 16 14 O -0.99 -50.30 16.25 -128.00 -2.08 -52.38 16 15 O -0.99 -41.48 15.84 -128.00 -2.03 -43.51 16 16 C -0.68 -22.82 5.97 22.27 0.13 -22.68 16 17 C -0.04 -0.94 8.42 22.27 0.19 -0.75 16 18 C -0.14 -2.61 10.05 22.27 0.22 -2.39 16 19 C -0.06 -1.06 10.05 22.27 0.22 -0.84 16 20 C -0.14 -3.33 10.05 22.27 0.22 -3.10 16 21 C -0.05 -1.47 9.52 22.27 0.21 -1.26 16 22 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 23 H 0.09 1.92 8.14 -2.39 -0.02 1.91 16 24 H 0.06 1.46 7.01 -2.39 -0.02 1.45 16 25 H 0.08 2.82 8.11 -2.39 -0.02 2.80 16 26 H 0.09 2.86 6.91 -2.39 -0.02 2.85 16 27 H 0.03 1.55 8.11 -2.39 -0.02 1.53 16 28 H 0.02 0.88 7.61 -2.38 -0.02 0.86 16 29 H 0.27 14.79 8.31 -92.71 -0.77 14.02 16 30 H 0.15 3.45 7.62 -2.91 -0.02 3.43 16 31 H 0.17 1.85 8.06 -2.91 -0.02 1.83 16 32 H 0.17 1.56 8.06 -2.91 -0.02 1.54 16 33 H 0.16 2.71 8.06 -2.91 -0.02 2.69 16 34 H 0.12 4.26 7.62 -2.91 -0.02 4.24 16 Total: -1.00 -73.43 304.85 1.16 -72.27 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: 1.08 Total: 8.23 kcal Atomic # 6 Polarization: -49.70 SS G_CDS: 3.63 Total: -46.06 kcal Atomic # 7 Polarization: -96.91 SS G_CDS: -1.15 Total: -98.07 kcal Atomic # 8 Polarization: -91.78 SS G_CDS: -4.11 Total: -95.88 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal Atomic # 16 Polarization: 112.68 SS G_CDS: -0.32 Total: 112.36 kcal Total: -73.43 1.16 -72.27 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000033466468.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.842 kcal (2) G-P(sol) polarization free energy of solvation -73.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds