Wall clock time and date at job start Mon Mar 30 2020 01:34:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46493 * 109.47057 * 2 1 4 4 C 1.37099 * 119.99887 * 263.78762 * 3 2 1 5 5 H 1.08005 * 119.99867 * 188.71816 * 4 3 2 6 6 C 1.38943 * 120.00203 * 8.72188 * 4 3 2 7 7 N 1.31417 * 120.00119 * 24.21895 * 6 4 3 8 8 Si 1.86800 * 119.99932 * 204.22457 * 6 4 3 9 9 H 1.48500 * 109.47246 * 84.97808 * 8 6 4 10 10 H 1.48502 * 109.47110 * 204.97929 * 8 6 4 11 11 H 1.48497 * 109.47174 * 324.97709 * 8 6 4 12 12 C 1.34772 * 120.00271 * 84.06127 * 3 2 1 13 13 O 1.21290 * 120.00823 * 179.72313 * 12 3 2 14 14 C 1.50710 * 119.99824 * 359.72731 * 12 3 2 15 15 N 1.46499 * 109.47107 * 179.97438 * 14 12 3 16 16 C 1.34429 * 126.81950 * 125.00096 * 15 14 12 17 17 N 1.30833 * 108.07562 * 180.02562 * 16 15 14 18 18 C 1.33240 * 109.82945 * 359.97438 * 17 16 15 19 19 N 1.48021 * 125.52742 * 180.02562 * 18 17 16 20 20 O 1.21797 * 119.99834 * 359.97438 * 19 18 17 21 21 O 1.21806 * 120.00034 * 179.97438 * 19 18 17 22 22 N 1.30713 * 108.94494 * 359.72160 * 18 17 16 23 23 H 1.09004 * 109.47189 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.47188 * 299.99695 * 1 2 3 25 25 H 1.09001 * 109.47280 * 60.00105 * 1 2 3 26 26 H 1.09006 * 109.46813 * 240.00312 * 2 1 3 27 27 H 1.08995 * 109.47144 * 120.00325 * 2 1 3 28 28 H 0.96996 * 119.99510 * 180.02562 * 7 6 4 29 29 H 1.08995 * 109.46752 * 299.99685 * 14 12 3 30 30 H 1.09002 * 109.47089 * 59.99790 * 14 12 3 31 31 H 1.07998 * 125.96709 * 0.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3679 1.9846 -1.1804 5 1 2.8582 2.9469 -1.1704 6 6 2.0914 1.3583 -2.3894 7 7 1.1200 0.4764 -2.4656 8 14 3.1005 1.7697 -3.9066 9 1 4.3325 0.9407 -3.9214 10 1 2.2997 1.4880 -5.1251 11 1 3.4715 3.2073 -3.8795 12 6 2.1291 2.0568 1.1609 13 8 2.5381 3.1986 1.1615 14 6 1.7448 1.3934 2.4584 15 7 1.9552 2.3288 3.5661 16 6 1.0476 2.7116 4.4808 17 7 1.6252 3.5544 5.2979 18 6 2.8958 3.7333 4.9389 19 7 3.8674 4.6150 5.6242 20 8 3.5253 5.2527 6.6039 21 8 5.0089 4.7027 5.2085 22 7 3.1470 2.9988 3.8871 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.8933 -0.5138 -0.8901 27 1 1.8933 -0.5139 0.8899 28 1 0.9273 0.0390 -3.3096 29 1 0.6946 1.1040 2.4213 30 1 2.3608 0.5070 2.6097 31 1 0.0207 2.3811 4.5323 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049426390.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:26 Heat of formation + Delta-G solvation = 73.306505 kcal Electronic energy + Delta-G solvation = -20412.918810 eV Core-core repulsion = 16929.168679 eV Total energy + Delta-G solvation = -3483.750131 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.096 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -44.10439 -43.17710 -40.55421 -38.04347 -37.20347 -35.49604 -33.86716 -33.19894 -31.28070 -30.36397 -28.23246 -26.49743 -24.14289 -23.69729 -23.41886 -21.16224 -20.39502 -20.06630 -19.25995 -18.86203 -18.33252 -17.73567 -17.04859 -16.35595 -16.24551 -16.13170 -15.69848 -14.63687 -14.47820 -14.20792 -13.77561 -13.39730 -13.12826 -13.08649 -12.90837 -12.83891 -12.61616 -12.60487 -12.19825 -12.07321 -11.85267 -11.76912 -11.62016 -11.55168 -10.87704 -10.41781 -9.78283 -8.41320 -5.91420 -1.32590 -0.70655 0.20079 0.94768 1.23762 1.30960 1.41881 1.49543 1.86151 2.21094 2.64101 2.95249 3.00385 3.34917 3.72831 3.87425 3.93202 4.01979 4.43904 4.48637 4.83851 4.87141 4.91096 5.17333 5.28688 5.39428 5.50698 5.87313 5.98171 6.00790 6.45198 6.46373 7.11595 7.39027 7.92190 8.54954 Molecular weight = 269.10amu Principal moments of inertia in cm(-1) A = 0.030078 B = 0.004780 C = 0.004242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.696604 B = 5856.843745 C = 6598.596051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.107 3.893 3 N -0.436 5.436 4 C -0.350 4.350 5 H 0.064 0.936 6 C 0.017 3.983 7 N -0.856 5.856 8 Si 0.971 3.029 9 H -0.270 1.270 10 H -0.270 1.270 11 H -0.286 1.286 12 C 0.406 3.594 13 O -0.631 6.631 14 C 0.119 3.881 15 N -0.325 5.325 16 C 0.306 3.694 17 N -0.520 5.520 18 C 0.243 3.757 19 N 0.065 4.935 20 O -0.087 6.087 21 O -0.152 6.152 22 N -0.228 5.228 23 H 0.071 0.929 24 H 0.051 0.949 25 H 0.054 0.946 26 H 0.081 0.919 27 H 0.080 0.920 28 H 0.276 0.724 29 H 0.186 0.814 30 H 0.145 0.855 31 H 0.311 0.689 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.850 -7.003 9.045 12.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.015 4.015 3 N -0.154 5.154 4 C -0.477 4.477 5 H 0.082 0.918 6 C -0.188 4.188 7 N -0.493 5.493 8 Si 0.796 3.204 9 H -0.196 1.196 10 H -0.195 1.195 11 H -0.212 1.212 12 C 0.194 3.806 13 O -0.519 6.519 14 C -0.004 4.004 15 N -0.119 5.119 16 C 0.012 3.988 17 N -0.252 5.252 18 C -0.116 4.116 19 N 0.594 4.406 20 O -0.315 6.315 21 O -0.361 6.361 22 N -0.069 5.069 23 H 0.090 0.910 24 H 0.069 0.931 25 H 0.073 0.927 26 H 0.100 0.900 27 H 0.098 0.902 28 H 0.086 0.914 29 H 0.203 0.797 30 H 0.162 0.838 31 H 0.326 0.674 Dipole moment (debyes) X Y Z Total from point charges -5.622 -6.957 8.371 12.250 hybrid contribution 0.758 0.649 -1.094 1.481 sum -4.863 -6.308 7.277 10.789 Atomic orbital electron populations 1.22016 0.94596 1.01885 1.01527 1.21782 0.96102 0.81289 1.02367 1.43977 1.54334 1.12569 1.04544 1.19433 1.38537 1.05768 0.83988 0.91800 1.25664 0.96031 0.96739 1.00384 1.70138 1.23942 1.27371 1.27831 0.85295 0.78967 0.78169 0.77961 1.19573 1.19460 1.21210 1.20557 0.86645 0.87128 0.86267 1.90617 1.53415 1.20833 1.87044 1.22345 1.08425 0.89407 0.80187 1.50435 1.05486 1.32523 1.23449 1.27650 0.99530 0.89291 0.82321 1.69966 1.03153 1.20985 1.31124 1.23924 0.90963 1.01021 0.95726 1.41772 1.00066 0.99015 0.99764 1.94549 1.83442 1.39970 1.13532 1.94654 1.01971 1.70086 1.69379 1.78290 1.08225 1.09081 1.11284 0.91021 0.93054 0.92686 0.90039 0.90231 0.91365 0.79659 0.83787 0.67414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.18 9.64 71.98 0.69 -3.49 16 2 C 0.11 3.61 5.07 86.38 0.44 4.05 16 3 N -0.44 -19.13 2.64 -635.55 -1.68 -20.81 16 4 C -0.35 -18.24 9.43 84.04 0.79 -17.45 16 5 H 0.06 3.80 7.30 -2.91 -0.02 3.78 16 6 C 0.02 0.79 4.92 84.92 0.42 1.21 16 7 N -0.86 -38.49 8.57 21.66 0.19 -38.30 16 8 Si 0.97 39.62 29.62 68.60 2.03 41.65 16 9 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 10 H -0.27 -10.36 7.11 99.48 0.71 -9.65 16 11 H -0.29 -12.44 7.11 99.48 0.71 -11.74 16 12 C 0.41 16.99 7.62 87.66 0.67 17.66 16 13 O -0.63 -34.06 15.35 -3.06 -0.05 -34.11 16 14 C 0.12 2.95 5.64 85.64 0.48 3.43 16 15 N -0.32 -9.17 3.40 -355.79 -1.21 -10.38 16 16 C 0.31 6.25 12.63 180.36 2.28 8.53 16 17 N -0.52 -15.38 11.15 -194.44 -2.17 -17.55 16 18 C 0.24 8.83 9.01 256.53 2.31 11.14 16 19 N 0.07 2.42 4.45 -53.27 -0.24 2.19 16 20 O -0.09 -2.98 19.23 18.89 0.36 -2.62 16 21 O -0.15 -5.89 19.22 18.88 0.36 -5.53 16 22 N -0.23 -8.74 11.79 -53.47 -0.63 -9.37 16 23 H 0.07 1.71 8.14 -2.38 -0.02 1.69 16 24 H 0.05 1.17 6.50 -2.39 -0.02 1.16 16 25 H 0.05 2.11 6.35 -2.39 -0.02 2.10 16 26 H 0.08 3.22 5.83 -2.38 -0.01 3.21 16 27 H 0.08 1.94 6.69 -2.39 -0.02 1.93 16 28 H 0.28 11.71 8.31 -92.71 -0.77 10.94 16 29 H 0.19 2.53 6.40 -2.39 -0.02 2.52 16 30 H 0.14 2.77 7.41 -2.39 -0.02 2.75 16 31 H 0.31 1.30 8.06 -2.91 -0.02 1.28 16 Total: -1.00 -76.11 281.70 6.25 -69.86 By element: Atomic # 1 Polarization: -1.31 SS G_CDS: 1.19 Total: -0.11 kcal Atomic # 6 Polarization: 17.00 SS G_CDS: 8.08 Total: 25.08 kcal Atomic # 7 Polarization: -88.49 SS G_CDS: -5.74 Total: -94.22 kcal Atomic # 8 Polarization: -42.94 SS G_CDS: 0.68 Total: -42.26 kcal Atomic # 14 Polarization: 39.62 SS G_CDS: 2.03 Total: 41.65 kcal Total: -76.11 6.25 -69.86 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049426390.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.168 kcal (2) G-P(sol) polarization free energy of solvation -76.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.862 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds