Wall clock time and date at job start Mon Mar 30 2020 01:28:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47145 * 240.00568 * 2 1 3 13 13 S 1.65606 * 120.00213 * 94.99840 * 12 2 1 14 14 O 1.42098 * 104.27410 * 181.07152 * 13 12 2 15 15 O 1.42100 * 104.27459 * 308.92865 * 13 12 2 16 16 C 1.81394 * 104.44702 * 65.00061 * 13 12 2 17 17 C 1.50700 * 109.47194 * 180.02562 * 16 13 12 18 18 C 1.38239 * 119.99618 * 269.72734 * 17 16 13 19 19 C 1.38234 * 119.99522 * 179.76368 * 18 17 16 20 20 C 1.38238 * 120.00206 * 0.48847 * 19 18 17 21 21 C 1.38235 * 119.99857 * 359.78412 * 20 19 18 22 22 C 1.38232 * 120.00119 * 89.99894 * 17 16 13 23 23 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 24 24 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 25 25 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 26 26 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 27 27 H 0.97006 * 119.99959 * 275.00431 * 12 2 1 28 28 H 1.09007 * 109.47432 * 299.99980 * 16 13 12 29 29 H 1.09004 * 109.47490 * 59.99713 * 16 13 12 30 30 H 1.07992 * 120.00205 * 359.97438 * 18 17 16 31 31 H 1.08006 * 120.00347 * 180.25216 * 19 18 17 32 32 H 1.07997 * 119.99841 * 179.77248 * 20 19 18 33 33 H 1.08004 * 120.00200 * 179.97438 * 21 20 19 34 34 H 1.07996 * 119.99956 * 0.02562 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.8269 -0.4203 5.2204 10 1 1.8258 -2.5205 4.0075 11 1 3.8063 -1.1213 4.0080 12 7 2.0183 -0.6905 -1.1962 13 16 2.4122 0.1774 -2.5505 14 8 2.8122 -0.8073 -3.4937 15 8 1.2751 0.9968 -2.7845 16 6 3.8313 1.1874 -2.0440 17 6 4.2864 2.0327 -3.2056 18 6 5.2432 1.5497 -4.0788 19 6 5.6571 2.3231 -5.1471 20 6 5.1217 3.5835 -5.3366 21 6 4.1691 4.0686 -4.4601 22 6 3.7513 3.2931 -3.3948 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 0.7089 1.1611 3.4845 27 1 2.1109 -1.6561 -1.1950 28 1 3.5399 1.8344 -1.2165 29 1 4.6459 0.5363 -1.7267 30 1 5.6647 0.5669 -3.9282 31 1 6.4016 1.9443 -5.8317 32 1 5.4479 4.1891 -6.1691 33 1 3.7511 5.0534 -4.6079 34 1 3.0074 3.6723 -2.7099 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050336768.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:43 Heat of formation + Delta-G solvation = -56.959594 kcal Electronic energy + Delta-G solvation = -18459.127131 eV Core-core repulsion = 15483.728702 eV Total energy + Delta-G solvation = -2975.398430 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.087 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.25809 -36.58424 -35.52130 -35.30740 -32.97374 -32.23038 -30.94677 -28.28575 -27.23956 -25.24414 -22.63796 -21.62619 -20.97761 -18.77235 -17.50934 -16.89361 -16.30730 -15.82808 -15.56305 -15.12012 -15.04071 -14.60958 -13.65210 -13.44986 -13.28337 -12.79399 -12.70980 -12.40192 -12.22633 -11.69391 -11.60647 -11.48246 -11.36282 -11.15725 -11.05520 -10.99893 -10.74944 -10.60217 -10.28911 -10.12824 -9.26098 -8.97847 -8.76538 -8.61838 -8.26170 -6.18110 -4.27326 0.65346 1.34870 1.40487 3.22512 3.28225 3.29174 3.45058 3.72745 4.19901 4.31946 4.56483 4.63822 4.91755 4.94641 5.07733 5.13184 5.33414 5.43725 5.57387 5.66118 5.98564 5.99629 6.27917 6.38340 6.44147 6.49894 6.80762 6.91992 7.06062 7.09088 7.54670 7.68397 7.79198 8.00502 8.24156 8.76606 9.39818 10.87224 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.027691 B = 0.005170 C = 0.004977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.899889 B = 5414.923232 C = 5624.782727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.273 3.727 3 H 0.038 0.962 4 C -0.530 4.530 5 H 0.064 0.936 6 C 0.065 3.935 7 N -0.886 5.886 8 Si 0.901 3.099 9 H -0.286 1.286 10 H -0.276 1.276 11 H -0.276 1.276 12 N -1.103 6.103 13 S 2.609 3.391 14 O -0.977 6.977 15 O -0.955 6.955 16 C -0.593 4.593 17 C -0.082 4.082 18 C -0.109 4.109 19 C -0.120 4.120 20 C -0.120 4.120 21 C -0.119 4.119 22 C -0.106 4.106 23 H 0.090 0.910 24 H 0.027 0.973 25 H 0.031 0.969 26 H 0.266 0.734 27 H 0.409 0.591 28 H 0.145 0.855 29 H 0.140 0.860 30 H 0.129 0.871 31 H 0.125 0.875 32 H 0.123 0.877 33 H 0.127 0.873 34 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.668 4.096 -10.441 13.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.169 3.831 3 H 0.056 0.944 4 C -0.570 4.570 5 H 0.082 0.918 6 C -0.138 4.138 7 N -0.524 5.524 8 Si 0.728 3.272 9 H -0.211 1.211 10 H -0.201 1.201 11 H -0.202 1.202 12 N -0.863 5.863 13 S 2.700 3.300 14 O -0.967 6.967 15 O -0.945 6.945 16 C -0.719 4.719 17 C -0.084 4.084 18 C -0.128 4.128 19 C -0.138 4.138 20 C -0.138 4.138 21 C -0.137 4.137 22 C -0.125 4.125 23 H 0.109 0.891 24 H 0.046 0.954 25 H 0.051 0.949 26 H 0.076 0.924 27 H 0.242 0.758 28 H 0.164 0.836 29 H 0.158 0.842 30 H 0.147 0.853 31 H 0.143 0.857 32 H 0.141 0.859 33 H 0.145 0.855 34 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 7.116 4.381 -11.096 13.890 hybrid contribution 0.875 -0.627 1.563 1.897 sum 7.990 3.754 -9.533 12.993 Atomic orbital electron populations 1.22222 0.98015 0.99985 1.01498 1.18527 0.91738 0.91828 0.81044 0.94436 1.21285 1.32269 1.13379 0.90053 0.91753 1.24936 0.94781 0.94993 0.99123 1.69872 1.35845 1.22535 1.24123 0.86520 0.79116 0.79763 0.81777 1.21150 1.20106 1.20203 1.55650 1.80785 1.18500 1.31385 1.04931 0.76164 0.75015 0.73845 1.93522 1.84704 1.57616 1.60889 1.93574 1.45266 1.71303 1.84362 1.29756 1.22078 1.14152 1.05868 1.19124 0.98695 0.95215 0.95323 1.21199 0.96613 1.00244 0.94744 1.21144 1.00344 0.94625 0.97732 1.21217 0.97195 0.96066 0.99342 1.21171 0.97573 1.00044 0.94872 1.21271 0.99506 0.93394 0.98339 0.89112 0.95388 0.94940 0.92441 0.75778 0.83649 0.84157 0.85270 0.85653 0.85878 0.85549 0.84952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.81 9.29 37.16 0.35 -3.46 16 2 C 0.27 6.43 2.66 -69.09 -0.18 6.24 16 3 H 0.04 0.91 7.15 -51.93 -0.37 0.53 16 4 C -0.53 -13.39 8.76 -34.44 -0.30 -13.70 16 5 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 6 C 0.07 1.68 5.30 -17.82 -0.09 1.58 16 7 N -0.89 -23.72 11.32 55.43 0.63 -23.10 16 8 Si 0.90 20.02 29.54 -169.99 -5.02 14.99 16 9 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 10 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 11 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 12 N -1.10 -22.04 5.35 -5.88 -0.03 -22.07 16 13 S 2.61 48.54 5.36 -107.50 -0.58 47.97 16 14 O -0.98 -19.47 18.08 -57.54 -1.04 -20.51 16 15 O -0.96 -20.52 17.11 -57.54 -0.98 -21.50 16 16 C -0.59 -9.14 6.09 36.01 0.22 -8.92 16 17 C -0.08 -1.22 5.14 -104.62 -0.54 -1.76 16 18 C -0.11 -1.46 9.70 -39.58 -0.38 -1.85 16 19 C -0.12 -1.38 10.05 -39.58 -0.40 -1.78 16 20 C -0.12 -1.30 10.05 -39.58 -0.40 -1.70 16 21 C -0.12 -1.41 10.05 -39.58 -0.40 -1.80 16 22 C -0.11 -1.50 9.70 -39.58 -0.38 -1.88 16 23 H 0.09 2.34 6.07 -51.93 -0.32 2.03 16 24 H 0.03 0.64 7.43 -51.93 -0.39 0.26 16 25 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 26 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 27 H 0.41 7.56 8.79 -34.48 -0.30 7.25 16 28 H 0.15 2.21 7.39 -51.92 -0.38 1.82 16 29 H 0.14 1.88 8.08 -51.92 -0.42 1.46 16 30 H 0.13 1.54 8.06 -52.49 -0.42 1.12 16 31 H 0.13 1.09 8.06 -52.48 -0.42 0.66 16 32 H 0.12 0.98 8.06 -52.49 -0.42 0.55 16 33 H 0.13 1.17 8.06 -52.48 -0.42 0.74 16 34 H 0.13 1.77 8.06 -52.49 -0.42 1.35 16 LS Contribution 304.33 15.07 4.59 4.59 Total: -1.00 -31.04 304.33 -9.21 -40.26 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: -4.26 Total: 8.40 kcal Atomic # 6 Polarization: -26.51 SS G_CDS: -2.51 Total: -29.02 kcal Atomic # 7 Polarization: -45.77 SS G_CDS: 0.60 Total: -45.17 kcal Atomic # 8 Polarization: -39.99 SS G_CDS: -2.02 Total: -42.02 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.02 Total: 14.99 kcal Atomic # 16 Polarization: 48.54 SS G_CDS: -0.58 Total: 47.97 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -31.04 -9.21 -40.26 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050336768.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.702 kcal (2) G-P(sol) polarization free energy of solvation -31.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds