Wall clock time and date at job start Mon Mar 30 2020 01:28:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47145 * 240.00568 * 2 1 3 13 13 S 1.65606 * 120.00213 * 94.99840 * 12 2 1 14 14 O 1.42098 * 104.27410 * 181.07152 * 13 12 2 15 15 O 1.42100 * 104.27459 * 308.92865 * 13 12 2 16 16 C 1.81394 * 104.44702 * 65.00061 * 13 12 2 17 17 C 1.50700 * 109.47194 * 180.02562 * 16 13 12 18 18 C 1.38239 * 119.99618 * 269.72734 * 17 16 13 19 19 C 1.38234 * 119.99522 * 179.76368 * 18 17 16 20 20 C 1.38238 * 120.00206 * 0.48847 * 19 18 17 21 21 C 1.38235 * 119.99857 * 359.78412 * 20 19 18 22 22 C 1.38232 * 120.00119 * 89.99894 * 17 16 13 23 23 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 24 24 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 25 25 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 26 26 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 27 27 H 0.97006 * 119.99959 * 275.00431 * 12 2 1 28 28 H 1.09007 * 109.47432 * 299.99980 * 16 13 12 29 29 H 1.09004 * 109.47490 * 59.99713 * 16 13 12 30 30 H 1.07992 * 120.00205 * 359.97438 * 18 17 16 31 31 H 1.08006 * 120.00347 * 180.25216 * 19 18 17 32 32 H 1.07997 * 119.99841 * 179.77248 * 20 19 18 33 33 H 1.08004 * 120.00200 * 179.97438 * 21 20 19 34 34 H 1.07996 * 119.99956 * 0.02562 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.8269 -0.4203 5.2204 10 1 1.8258 -2.5205 4.0075 11 1 3.8063 -1.1213 4.0080 12 7 2.0183 -0.6905 -1.1962 13 16 2.4122 0.1774 -2.5505 14 8 2.8122 -0.8073 -3.4937 15 8 1.2751 0.9968 -2.7845 16 6 3.8313 1.1874 -2.0440 17 6 4.2864 2.0327 -3.2056 18 6 5.2432 1.5497 -4.0788 19 6 5.6571 2.3231 -5.1471 20 6 5.1217 3.5835 -5.3366 21 6 4.1691 4.0686 -4.4601 22 6 3.7513 3.2931 -3.3948 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 0.7089 1.1611 3.4845 27 1 2.1109 -1.6561 -1.1950 28 1 3.5399 1.8344 -1.2165 29 1 4.6459 0.5363 -1.7267 30 1 5.6647 0.5669 -3.9282 31 1 6.4016 1.9443 -5.8317 32 1 5.4479 4.1891 -6.1691 33 1 3.7511 5.0534 -4.6079 34 1 3.0074 3.6723 -2.7099 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050336768.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:42 Heat of formation + Delta-G solvation = -77.899128 kcal Electronic energy + Delta-G solvation = -18460.035137 eV Core-core repulsion = 15483.728702 eV Total energy + Delta-G solvation = -2976.306436 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.087 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.20814 -38.17624 -37.27140 -36.93883 -34.11226 -34.02517 -31.87450 -30.12222 -28.35375 -27.22804 -23.57793 -22.84550 -22.63579 -20.30626 -19.18695 -18.06126 -17.88999 -17.20976 -17.11130 -16.60098 -16.08825 -16.01303 -15.33575 -14.55175 -14.36662 -14.29543 -14.04244 -13.81365 -13.66646 -13.47044 -13.23497 -13.11014 -12.96189 -12.79627 -12.39277 -12.36651 -12.23080 -12.04584 -11.97249 -11.91369 -11.11844 -10.58151 -10.15861 -9.92211 -9.64897 -8.13458 -6.28717 -0.76168 0.38178 0.40757 1.47911 1.49069 1.56287 1.91242 2.44982 2.71809 2.86852 3.15940 3.24500 3.43043 3.80761 4.09102 4.16900 4.25278 4.47811 4.51236 4.55686 4.63976 4.90247 4.99547 5.08815 5.11402 5.15899 5.47100 5.50226 5.53373 5.59070 5.73101 6.01214 6.01680 6.08781 6.41820 6.82963 7.41739 8.91546 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.027691 B = 0.005170 C = 0.004977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.899889 B = 5414.923232 C = 5624.782727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.275 3.725 3 H 0.029 0.971 4 C -0.542 4.542 5 H 0.071 0.929 6 C 0.019 3.981 7 N -0.914 5.914 8 Si 0.962 3.038 9 H -0.287 1.287 10 H -0.273 1.273 11 H -0.269 1.269 12 N -1.105 6.105 13 S 2.614 3.386 14 O -0.991 6.991 15 O -0.991 6.991 16 C -0.569 4.569 17 C -0.112 4.112 18 C -0.124 4.124 19 C -0.122 4.122 20 C -0.113 4.113 21 C -0.124 4.124 22 C -0.130 4.130 23 H 0.071 0.929 24 H 0.027 0.973 25 H 0.033 0.967 26 H 0.266 0.734 27 H 0.414 0.586 28 H 0.145 0.855 29 H 0.162 0.838 30 H 0.139 0.861 31 H 0.157 0.843 32 H 0.159 0.841 33 H 0.151 0.849 34 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.602 4.284 -11.287 15.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.170 3.830 3 H 0.047 0.953 4 C -0.581 4.581 5 H 0.089 0.911 6 C -0.182 4.182 7 N -0.553 5.553 8 Si 0.788 3.212 9 H -0.212 1.212 10 H -0.198 1.198 11 H -0.194 1.194 12 N -0.864 5.864 13 S 2.710 3.290 14 O -0.982 6.982 15 O -0.981 6.981 16 C -0.699 4.699 17 C -0.114 4.114 18 C -0.144 4.144 19 C -0.140 4.140 20 C -0.131 4.131 21 C -0.142 4.142 22 C -0.149 4.149 23 H 0.090 0.910 24 H 0.046 0.954 25 H 0.053 0.947 26 H 0.075 0.925 27 H 0.249 0.751 28 H 0.163 0.837 29 H 0.180 0.820 30 H 0.157 0.843 31 H 0.174 0.826 32 H 0.177 0.823 33 H 0.169 0.831 34 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 9.014 4.521 -11.957 15.642 hybrid contribution 0.340 -0.601 1.701 1.836 sum 9.355 3.921 -10.255 14.424 Atomic orbital electron populations 1.22151 0.98855 0.99741 1.00510 1.18300 0.91149 0.91646 0.81954 0.95336 1.21603 1.32192 1.13592 0.90754 0.91115 1.25692 0.94971 0.95624 1.01883 1.69992 1.36874 1.23778 1.24651 0.85548 0.78826 0.78577 0.78285 1.21224 1.19782 1.19396 1.55472 1.81520 1.18984 1.30446 1.04664 0.76501 0.74638 0.73172 1.93493 1.84976 1.58519 1.61194 1.93520 1.48101 1.71712 1.84802 1.29473 1.20274 1.13805 1.06387 1.19217 1.00442 0.95792 0.95967 1.21487 0.96496 1.01155 0.95213 1.21580 1.00490 0.94629 0.97313 1.21695 0.95816 0.96072 0.99553 1.21538 0.97640 1.00879 0.94132 1.21466 1.00052 0.93860 0.99541 0.91000 0.95397 0.94746 0.92497 0.75144 0.83700 0.81996 0.84290 0.82580 0.82336 0.83126 0.85509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.54 9.29 71.98 0.67 -6.87 16 2 C 0.28 13.11 2.66 44.24 0.12 13.22 16 3 H 0.03 1.42 7.15 -2.39 -0.02 1.40 16 4 C -0.54 -27.27 8.76 25.60 0.22 -27.04 16 5 H 0.07 3.39 7.81 -2.91 -0.02 3.36 16 6 C 0.02 0.96 5.30 84.66 0.45 1.41 16 7 N -0.91 -49.42 11.32 21.45 0.24 -49.18 16 8 Si 0.96 40.63 29.54 68.60 2.03 42.66 16 9 H -0.29 -12.04 7.11 99.48 0.71 -11.34 16 10 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 11 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 12 N -1.11 -44.41 5.35 -172.53 -0.92 -45.34 16 13 S 2.61 97.90 5.36 -56.49 -0.30 97.60 16 14 O -0.99 -39.32 18.08 -127.65 -2.31 -41.63 16 15 O -0.99 -43.62 17.11 -127.65 -2.18 -45.81 16 16 C -0.57 -17.34 6.09 71.24 0.43 -16.91 16 17 C -0.11 -3.25 5.14 -19.87 -0.10 -3.35 16 18 C -0.12 -3.11 9.70 22.27 0.22 -2.90 16 19 C -0.12 -2.42 10.05 22.27 0.22 -2.20 16 20 C -0.11 -2.06 10.05 22.27 0.22 -1.84 16 21 C -0.12 -2.67 10.05 22.27 0.22 -2.45 16 22 C -0.13 -3.58 9.70 22.27 0.22 -3.37 16 23 H 0.07 3.81 6.07 -2.39 -0.01 3.80 16 24 H 0.03 1.32 7.43 -2.38 -0.02 1.30 16 25 H 0.03 1.61 8.14 -2.39 -0.02 1.59 16 26 H 0.27 13.71 8.31 -92.71 -0.77 12.94 16 27 H 0.41 15.33 8.79 -96.74 -0.85 14.48 16 28 H 0.14 4.44 7.39 -2.39 -0.02 4.42 16 29 H 0.16 4.14 8.08 -2.39 -0.02 4.12 16 30 H 0.14 3.06 8.06 -2.91 -0.02 3.03 16 31 H 0.16 2.05 8.06 -2.91 -0.02 2.03 16 32 H 0.16 1.74 8.06 -2.91 -0.02 1.72 16 33 H 0.15 2.39 8.06 -2.91 -0.02 2.36 16 34 H 0.13 3.47 8.06 -2.91 -0.02 3.45 16 Total: -1.00 -65.88 304.33 -0.30 -66.18 By element: Atomic # 1 Polarization: 27.57 SS G_CDS: 0.25 Total: 27.82 kcal Atomic # 6 Polarization: -55.19 SS G_CDS: 2.89 Total: -52.30 kcal Atomic # 7 Polarization: -93.84 SS G_CDS: -0.68 Total: -94.52 kcal Atomic # 8 Polarization: -82.95 SS G_CDS: -4.49 Total: -87.44 kcal Atomic # 14 Polarization: 40.63 SS G_CDS: 2.03 Total: 42.66 kcal Atomic # 16 Polarization: 97.90 SS G_CDS: -0.30 Total: 97.60 kcal Total: -65.88 -0.30 -66.18 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050336768.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.723 kcal (2) G-P(sol) polarization free energy of solvation -65.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds