Wall clock time and date at job start Mon Mar 30 2020 01:21:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.46623 * 2 1 4 4 N 1.46496 * 109.47594 * 119.99702 * 2 1 3 5 5 S 1.65605 * 119.99926 * 96.09974 * 4 2 1 6 6 O 1.42098 * 106.39963 * 178.33776 * 5 4 2 7 7 O 1.42100 * 106.39999 * 311.26226 * 5 4 2 8 8 C 1.76203 * 107.21537 * 64.80124 * 5 4 2 9 9 C 1.37635 * 120.12495 * 244.87540 * 8 5 4 10 10 C 1.38609 * 120.24796 * 179.97438 * 9 8 5 11 11 C 1.38664 * 120.50241 * 0.02562 * 10 9 8 12 12 C 1.37598 * 120.24448 * 0.02562 * 11 10 9 13 13 C 1.40697 * 120.12648 * 64.60598 * 8 5 4 14 14 C 1.41398 * 120.24449 * 359.97438 * 13 8 5 15 15 H 1.07998 * 119.99943 * 330.66238 * 14 13 8 16 16 C 1.39947 * 119.99769 * 150.66739 * 14 13 8 17 17 N 1.30824 * 119.99962 * 161.84066 * 16 14 13 18 18 Si 1.86802 * 119.99974 * 341.83646 * 16 14 13 19 19 H 1.48506 * 109.46866 * 95.28486 * 18 16 14 20 20 H 1.48496 * 109.47015 * 215.28312 * 18 16 14 21 21 H 1.48499 * 109.47345 * 335.28471 * 18 16 14 22 22 H 1.08998 * 109.47523 * 60.00150 * 1 2 3 23 23 H 1.09005 * 109.46544 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47294 * 299.99730 * 1 2 3 25 25 H 1.08997 * 109.47294 * 240.00270 * 2 1 3 26 26 H 1.08999 * 109.46934 * 180.02562 * 3 2 1 27 27 H 1.09008 * 109.46949 * 300.00062 * 3 2 1 28 28 H 1.08997 * 109.47554 * 60.00330 * 3 2 1 29 29 H 0.97002 * 120.00141 * 275.82959 * 4 2 1 30 30 H 1.08006 * 119.87726 * 0.02562 * 9 8 5 31 31 H 1.08002 * 119.75221 * 180.02562 * 10 9 8 32 32 H 1.07995 * 119.87613 * 179.97438 * 11 10 9 33 33 H 1.08001 * 120.12632 * 179.97438 * 12 11 10 34 34 H 0.96993 * 120.00073 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0184 -0.6905 1.1961 5 16 2.4382 -2.2904 1.1152 6 8 2.9021 -2.6494 2.4095 7 8 1.3647 -2.9543 0.4624 8 6 3.8270 -2.4114 0.0376 9 6 3.7192 -3.0907 -1.1546 10 6 4.8099 -3.1870 -2.0045 11 6 6.0204 -2.6020 -1.6650 12 6 6.1513 -1.9189 -0.4778 13 6 5.0487 -1.8090 0.3899 14 6 5.1694 -1.1033 1.6091 15 1 4.3069 -0.6146 2.0379 16 6 6.4064 -1.0378 2.2603 17 7 6.6196 -0.1213 3.1691 18 14 7.7532 -2.2593 1.8318 19 1 8.6605 -1.6609 0.8198 20 1 8.5268 -2.5924 3.0548 21 1 7.1430 -3.4956 1.2800 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3632 -1.0278 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 3.1299 1.4426 -0.0005 27 1 1.6764 1.9564 -0.8901 28 1 1.6766 1.9564 0.8900 29 1 2.0997 -0.2096 2.0346 30 1 2.7809 -3.5498 -1.4293 31 1 4.7163 -3.7216 -2.9382 32 1 6.8638 -2.6837 -2.3346 33 1 7.0952 -1.4644 -0.2151 34 1 7.4768 -0.0762 3.6206 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063046442.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:57 Heat of formation + Delta-G solvation = -90.573651 kcal Electronic energy + Delta-G solvation = -19378.724321 eV Core-core repulsion = 16401.868277 eV Total energy + Delta-G solvation = -2976.856044 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.087 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.59295 -38.14307 -37.51806 -36.66111 -35.66085 -32.51748 -31.80592 -31.31705 -27.94647 -27.20475 -23.76236 -22.98637 -22.24887 -20.36447 -19.56290 -18.70817 -18.05726 -17.20132 -16.98815 -15.99745 -15.90207 -15.48442 -15.21735 -15.08978 -14.57922 -14.27542 -13.98164 -13.76740 -13.55193 -13.07182 -12.98089 -12.97453 -12.87610 -12.69247 -12.55007 -12.36560 -12.26443 -12.16480 -11.75919 -11.71378 -11.31914 -11.06227 -10.27999 -9.96273 -9.60223 -9.05629 -6.71346 -0.16696 0.34671 0.77724 1.20384 1.35409 1.43093 2.03506 2.32247 2.51087 2.96847 3.32322 3.80572 3.96231 4.21309 4.26750 4.31535 4.33388 4.55385 4.63556 4.72053 4.85651 4.92290 4.97569 5.02216 5.18086 5.27674 5.39015 5.44424 5.49908 5.57351 5.65337 5.83330 6.01587 6.19913 6.27464 6.49056 6.67889 7.99187 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.019209 B = 0.009316 C = 0.008081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.269018 B = 3004.907451 C = 3464.138229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.142 3.858 3 C -0.152 4.152 4 N -1.108 6.108 5 S 2.715 3.285 6 O -1.004 7.004 7 O -1.002 7.002 8 C -0.784 4.784 9 C 0.002 3.998 10 C -0.251 4.251 11 C -0.040 4.040 12 C -0.260 4.260 13 C 0.147 3.853 14 C -0.464 4.464 15 H 0.089 0.911 16 C 0.057 3.943 17 N -0.811 5.811 18 Si 0.951 3.049 19 H -0.244 1.244 20 H -0.274 1.274 21 H -0.259 1.259 22 H 0.089 0.911 23 H 0.050 0.950 24 H 0.068 0.932 25 H 0.075 0.925 26 H 0.044 0.956 27 H 0.089 0.911 28 H 0.068 0.932 29 H 0.417 0.583 30 H 0.131 0.869 31 H 0.139 0.861 32 H 0.138 0.862 33 H 0.108 0.892 34 H 0.301 0.699 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.163 2.120 -7.232 8.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.035 3.965 3 C -0.211 4.211 4 N -0.868 5.868 5 S 2.811 3.189 6 O -0.994 6.994 7 O -0.992 6.992 8 C -0.878 4.878 9 C -0.018 4.018 10 C -0.270 4.270 11 C -0.058 4.058 12 C -0.280 4.280 13 C 0.142 3.858 14 C -0.492 4.492 15 H 0.107 0.893 16 C -0.163 4.163 17 N -0.434 5.434 18 Si 0.774 3.226 19 H -0.169 1.169 20 H -0.200 1.200 21 H -0.183 1.183 22 H 0.107 0.893 23 H 0.069 0.931 24 H 0.087 0.913 25 H 0.093 0.907 26 H 0.064 0.936 27 H 0.108 0.892 28 H 0.087 0.913 29 H 0.252 0.748 30 H 0.148 0.852 31 H 0.157 0.843 32 H 0.156 0.844 33 H 0.126 0.874 34 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -4.521 1.529 -6.711 8.235 hybrid contribution 1.273 0.164 0.285 1.315 sum -3.248 1.693 -6.426 7.396 Atomic orbital electron populations 1.22305 0.93974 1.02519 1.03680 1.20864 0.95034 0.94705 0.85851 1.22044 1.01066 0.94255 1.03686 1.55479 1.81829 1.30395 1.19049 1.00544 0.73041 0.72589 0.72770 1.93497 1.82636 1.82398 1.40890 1.93434 1.54374 1.73810 1.77601 1.30194 1.17486 1.23090 1.17006 1.20766 0.98757 0.91435 0.90802 1.21009 0.93712 1.09896 1.02424 1.21298 0.97686 0.92097 0.94769 1.21371 0.99118 1.09664 0.97828 1.17235 0.90858 0.86106 0.91607 1.19892 0.97654 1.27349 1.04277 0.89271 1.26762 1.00733 0.95554 0.93258 1.69648 1.26468 1.27689 1.19636 0.85726 0.77981 0.80443 0.78469 1.16890 1.20018 1.18305 0.89259 0.93111 0.91329 0.90714 0.93637 0.89190 0.91295 0.74773 0.85164 0.84342 0.84404 0.87389 0.88835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.09 9.52 71.98 0.69 -3.40 16 2 C 0.14 4.20 3.39 44.99 0.15 4.35 16 3 C -0.15 -3.89 9.45 71.98 0.68 -3.21 16 4 N -1.11 -39.75 4.57 -169.39 -0.77 -40.52 16 5 S 2.71 118.68 4.87 -56.49 -0.27 118.41 16 6 O -1.00 -51.70 16.62 -128.00 -2.13 -53.83 16 7 O -1.00 -43.86 16.35 -128.00 -2.09 -45.95 16 8 C -0.78 -35.82 5.79 22.73 0.13 -35.69 16 9 C 0.00 0.08 9.53 22.22 0.21 0.29 16 10 C -0.25 -9.21 10.05 22.46 0.23 -8.98 16 11 C -0.04 -1.53 10.02 22.22 0.22 -1.31 16 12 C -0.26 -11.63 7.16 22.73 0.16 -11.47 16 13 C 0.15 7.18 5.12 -21.29 -0.11 7.07 16 14 C -0.46 -24.32 8.14 23.46 0.19 -24.13 16 15 H 0.09 4.73 5.94 -2.91 -0.02 4.71 16 16 C 0.06 2.90 5.41 85.26 0.46 3.36 16 17 N -0.81 -41.42 13.93 21.83 0.30 -41.12 16 18 Si 0.95 41.07 24.49 68.60 1.68 42.75 16 19 H -0.24 -9.51 6.69 99.48 0.67 -8.84 16 20 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 21 H -0.26 -11.86 6.84 99.48 0.68 -11.18 16 22 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 23 H 0.05 1.43 7.76 -2.38 -0.02 1.41 16 24 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 25 H 0.07 2.30 7.84 -2.39 -0.02 2.29 16 26 H 0.04 1.38 8.14 -2.39 -0.02 1.37 16 27 H 0.09 1.78 8.14 -2.38 -0.02 1.77 16 28 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 29 H 0.42 14.21 8.57 -96.74 -0.83 13.38 16 30 H 0.13 4.78 7.33 -2.91 -0.02 4.76 16 31 H 0.14 4.04 8.06 -2.91 -0.02 4.01 16 32 H 0.14 4.13 8.06 -2.91 -0.02 4.10 16 33 H 0.11 4.69 4.62 -2.91 -0.01 4.68 16 34 H 0.30 13.71 8.30 -92.71 -0.77 12.94 16 Total: -1.00 -63.66 292.24 -0.05 -63.70 By element: Atomic # 1 Polarization: 29.44 SS G_CDS: 0.22 Total: 29.66 kcal Atomic # 6 Polarization: -76.12 SS G_CDS: 3.02 Total: -73.10 kcal Atomic # 7 Polarization: -81.17 SS G_CDS: -0.47 Total: -81.64 kcal Atomic # 8 Polarization: -95.56 SS G_CDS: -4.22 Total: -99.78 kcal Atomic # 14 Polarization: 41.07 SS G_CDS: 1.68 Total: 42.75 kcal Atomic # 16 Polarization: 118.68 SS G_CDS: -0.27 Total: 118.41 kcal Total: -63.66 -0.05 -63.70 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063046442.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.871 kcal (2) G-P(sol) polarization free energy of solvation -63.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds