Wall clock time and date at job start Mon Mar 30 2020 01:22:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47128 * 2 1 4 4 N 1.46501 * 109.46698 * 179.97438 * 3 2 1 5 5 S 1.65602 * 119.99510 * 164.72670 * 4 3 2 6 6 O 1.42106 * 106.40261 * 178.54339 * 5 4 3 7 7 O 1.42097 * 106.40533 * 311.46033 * 5 4 3 8 8 C 1.76200 * 107.22079 * 65.00170 * 5 4 3 9 9 C 1.38630 * 119.74993 * 269.72817 * 8 5 4 10 10 C 1.37618 * 120.24695 * 179.71446 * 9 8 5 11 11 C 1.40719 * 119.74378 * 0.57642 * 10 9 8 12 12 C 1.41396 * 120.24427 * 179.67814 * 11 10 9 13 13 H 1.07991 * 120.00468 * 155.30906 * 12 11 10 14 14 C 1.39949 * 119.99931 * 335.31140 * 12 11 10 15 15 N 1.30824 * 120.00276 * 342.22899 * 14 12 11 16 16 Si 1.86800 * 120.00191 * 162.23310 * 14 12 11 17 17 H 1.48501 * 109.47159 * 94.66023 * 16 14 12 18 18 H 1.48499 * 109.47216 * 214.66410 * 16 14 12 19 19 H 1.48502 * 109.47008 * 334.66239 * 16 14 12 20 20 C 1.40711 * 119.51194 * 359.69948 * 11 10 9 21 21 C 1.37614 * 119.74678 * 359.97438 * 20 11 10 22 22 H 1.08996 * 109.46937 * 59.99885 * 1 2 3 23 23 H 1.08995 * 109.47314 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47088 * 299.99902 * 1 2 3 25 25 H 1.09007 * 109.46944 * 240.00229 * 2 1 3 26 26 H 1.09007 * 109.47090 * 120.00586 * 2 1 3 27 27 H 1.09003 * 109.47112 * 60.00792 * 3 2 1 28 28 H 1.08996 * 109.47306 * 299.99889 * 3 2 1 29 29 H 0.97002 * 120.00488 * 345.00798 * 4 3 2 30 30 H 1.08001 * 119.87848 * 359.97438 * 9 8 5 31 31 H 1.08005 * 120.12838 * 180.27790 * 10 9 8 32 32 H 0.96993 * 120.00542 * 180.02562 * 15 14 12 33 33 H 1.07998 * 120.12820 * 179.97438 * 20 11 10 34 34 H 1.07998 * 119.87955 * 179.97438 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 16 4.3332 2.8258 -0.3770 6 8 5.7140 2.5129 -0.2551 7 8 3.7527 3.3271 -1.5732 8 6 3.9776 4.0067 0.8814 9 6 2.8976 4.8636 0.7354 10 6 2.6071 5.7858 1.7146 11 6 3.4182 5.8651 2.8618 12 6 3.1333 6.8132 3.8713 13 1 3.4623 6.6382 4.8849 14 6 2.4250 7.9786 3.5569 15 7 2.3272 8.3690 2.3121 16 14 1.6194 8.9769 4.9148 17 1 2.5365 10.0646 5.3402 18 1 0.3527 9.5660 4.4111 19 1 1.3285 8.0936 6.0725 20 6 4.5151 4.9941 2.9966 21 6 4.7829 4.0752 2.0079 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8933 -0.5138 -0.8901 26 1 1.8934 -0.5140 0.8900 27 1 1.6768 1.9563 0.8901 28 1 1.6767 1.9563 -0.8899 29 1 3.9900 0.6309 0.2182 30 1 2.2795 4.8044 -0.1483 31 1 1.7626 6.4494 1.6009 32 1 1.8366 9.1768 2.0943 33 1 5.1445 5.0466 3.8727 34 1 5.6245 3.4060 2.1090 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063046451.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:01 Heat of formation + Delta-G solvation = -81.099508 kcal Electronic energy + Delta-G solvation = -18282.716493 eV Core-core repulsion = 15306.271278 eV Total energy + Delta-G solvation = -2976.445215 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.087 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -37.56877 -36.56355 -36.03572 -35.09421 -34.03305 -31.95813 -30.25256 -29.46153 -25.81301 -25.50142 -21.75327 -21.39095 -21.11387 -18.79078 -17.61309 -17.02252 -16.52888 -15.86596 -15.51513 -15.19104 -14.41267 -14.12327 -13.42568 -13.22406 -13.01925 -12.72899 -12.52875 -12.36347 -12.18241 -11.73970 -11.45070 -11.43990 -11.34185 -11.28273 -11.20750 -10.96492 -10.87043 -10.81343 -10.43904 -9.75513 -9.63470 -9.48695 -9.01232 -7.95274 -7.69949 -7.13680 -4.79703 1.28952 2.26394 2.87260 2.89118 2.92731 2.95689 3.66081 3.77384 4.25096 4.54470 4.86657 4.99265 5.14403 5.29986 5.38641 5.58669 5.67268 5.71236 5.96765 6.03192 6.09085 6.12990 6.16449 6.35967 6.68411 6.71689 6.91767 7.05590 7.31886 7.36141 7.43406 7.63981 7.77235 7.97448 8.32178 8.51644 8.65486 9.77999 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.022714 B = 0.005280 C = 0.004730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.451066 B = 5301.315373 C = 5918.263483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.129 4.129 3 C 0.119 3.881 4 N -1.128 6.128 5 S 2.695 3.305 6 O -0.987 6.987 7 O -0.985 6.985 8 C -0.788 4.788 9 C -0.016 4.016 10 C -0.184 4.184 11 C 0.140 3.860 12 C -0.436 4.436 13 H 0.087 0.913 14 C 0.072 3.928 15 N -0.765 5.765 16 Si 0.916 3.084 17 H -0.266 1.266 18 H -0.271 1.271 19 H -0.257 1.257 20 C -0.240 4.240 21 C 0.002 3.998 22 H 0.057 0.943 23 H 0.055 0.945 24 H 0.059 0.941 25 H 0.066 0.934 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.075 0.925 29 H 0.409 0.591 30 H 0.103 0.897 31 H 0.122 0.878 32 H 0.289 0.711 33 H 0.100 0.900 34 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.363 -9.238 -0.480 10.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.168 4.168 3 C -0.008 4.008 4 N -0.884 5.884 5 S 2.793 3.207 6 O -0.978 6.978 7 O -0.975 6.975 8 C -0.884 4.884 9 C -0.037 4.037 10 C -0.204 4.204 11 C 0.136 3.864 12 C -0.464 4.464 13 H 0.105 0.895 14 C -0.150 4.150 15 N -0.388 5.388 16 Si 0.739 3.261 17 H -0.191 1.191 18 H -0.196 1.196 19 H -0.180 1.180 20 C -0.260 4.260 21 C -0.018 4.018 22 H 0.076 0.924 23 H 0.074 0.926 24 H 0.078 0.922 25 H 0.085 0.915 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.094 0.906 29 H 0.241 0.759 30 H 0.121 0.879 31 H 0.140 0.860 32 H 0.101 0.899 33 H 0.118 0.882 34 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -4.022 -8.790 -1.472 9.778 hybrid contribution -0.429 0.522 1.291 1.457 sum -4.451 -8.268 -0.181 9.392 Atomic orbital electron populations 1.21722 0.95075 1.01763 1.02448 1.21707 0.96376 0.96253 1.02508 1.21256 0.79206 0.97913 1.02396 1.55730 1.15205 1.28456 1.89034 1.01158 0.72307 0.72754 0.74453 1.93487 1.31855 1.84562 1.87905 1.93480 1.78997 1.79811 1.45218 1.29149 1.14693 1.24653 1.19856 1.20266 0.93457 0.93288 0.96665 1.21339 1.02033 1.00935 0.96087 1.17853 0.87993 0.89069 0.91498 1.19931 1.28182 1.01425 0.96836 0.89465 1.26142 0.94049 0.98044 0.96756 1.69823 1.28883 1.20476 1.19574 0.86151 0.79163 0.79643 0.81099 1.19102 1.19585 1.18014 1.21024 1.00938 1.03449 1.00600 1.20164 0.94633 0.95345 0.91633 0.92350 0.92574 0.92232 0.91499 0.91457 0.91483 0.90646 0.75892 0.87876 0.86026 0.89947 0.88206 0.87813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.91 37.16 0.37 -1.01 16 2 C -0.13 -1.32 6.08 -26.73 -0.16 -1.49 16 3 C 0.12 1.59 6.22 -4.04 -0.03 1.56 16 4 N -1.13 -16.65 6.00 -10.61 -0.06 -16.71 16 5 S 2.69 52.30 5.73 -107.50 -0.62 51.68 16 6 O -0.99 -21.13 17.26 -57.17 -0.99 -22.11 16 7 O -0.98 -21.40 16.72 -57.17 -0.96 -22.36 16 8 C -0.79 -17.43 5.97 -39.29 -0.23 -17.67 16 9 C -0.02 -0.38 9.49 -39.66 -0.38 -0.76 16 10 C -0.18 -4.59 8.70 -38.87 -0.34 -4.92 16 11 C 0.14 3.54 5.57 -106.82 -0.60 2.95 16 12 C -0.44 -10.71 9.05 -37.74 -0.34 -11.05 16 13 H 0.09 2.02 7.91 -52.49 -0.41 1.60 16 14 C 0.07 1.67 5.14 -17.34 -0.09 1.58 16 15 N -0.77 -18.40 10.97 55.55 0.61 -17.79 16 16 Si 0.92 16.95 29.59 -169.99 -5.03 11.92 16 17 H -0.27 -4.87 7.11 56.52 0.40 -4.47 16 18 H -0.27 -4.90 7.11 56.52 0.40 -4.50 16 19 H -0.26 -4.70 7.11 56.52 0.40 -4.29 16 20 C -0.24 -5.70 9.80 -38.88 -0.38 -6.08 16 21 C 0.00 0.05 9.49 -39.66 -0.38 -0.32 16 22 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 23 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 24 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.08 1.04 7.75 -51.93 -0.40 0.64 16 29 H 0.41 4.99 8.65 -34.47 -0.30 4.69 16 30 H 0.10 2.21 7.59 -52.49 -0.40 1.81 16 31 H 0.12 3.06 6.18 -52.48 -0.32 2.74 16 32 H 0.29 6.22 8.30 -40.82 -0.34 5.88 16 33 H 0.10 2.18 8.06 -52.49 -0.42 1.76 16 34 H 0.10 2.11 7.60 -52.49 -0.40 1.71 16 LS Contribution 303.89 15.07 4.58 4.58 Total: -1.00 -29.94 303.89 -9.35 -39.29 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: -4.33 Total: 8.72 kcal Atomic # 6 Polarization: -34.66 SS G_CDS: -2.55 Total: -37.21 kcal Atomic # 7 Polarization: -35.05 SS G_CDS: 0.55 Total: -34.50 kcal Atomic # 8 Polarization: -42.53 SS G_CDS: -1.94 Total: -44.47 kcal Atomic # 14 Polarization: 16.95 SS G_CDS: -5.03 Total: 11.92 kcal Atomic # 16 Polarization: 52.30 SS G_CDS: -0.62 Total: 51.68 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -29.94 -9.35 -39.29 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063046451.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.814 kcal (2) G-P(sol) polarization free energy of solvation -29.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds