Wall clock time and date at job start Mon Mar 30 2020 01:46:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86806 * 119.99665 * 2 1 4 4 H 1.48498 * 109.46931 * 269.99482 * 3 2 1 5 5 H 1.48492 * 109.47321 * 29.99684 * 3 2 1 6 6 H 1.48501 * 109.46750 * 149.99959 * 3 2 1 7 7 C 1.38750 * 120.00228 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00184 * 165.99008 * 7 2 1 9 9 N 1.36835 * 120.00085 * 345.99203 * 7 2 1 10 10 C 1.46909 * 120.52289 * 332.74545 * 9 7 2 11 11 C 1.53425 * 107.80979 * 224.78216 * 10 9 7 12 12 C 1.52869 * 108.83548 * 296.78572 * 11 10 9 13 13 C 1.50607 * 110.46814 * 51.26773 * 12 11 10 14 14 C 1.38395 * 118.89842 * 159.56304 * 13 12 11 15 15 C 1.38641 * 120.27638 * 179.77639 * 14 13 12 16 16 O 1.35947 * 119.96366 * 179.97438 * 15 14 13 17 17 C 1.42896 * 116.99695 * 179.97438 * 16 15 14 18 18 F 1.39901 * 109.47124 * 59.99832 * 17 16 15 19 19 F 1.39899 * 109.47364 * 299.99793 * 17 16 15 20 20 C 1.38816 * 120.07161 * 0.23725 * 15 14 13 21 21 C 1.37918 * 119.86796 * 359.54184 * 20 15 14 22 22 C 1.38791 * 121.48991 * 339.42967 * 13 12 11 23 23 H 0.96996 * 120.00091 * 5.03952 * 1 2 3 24 24 H 1.09002 * 109.79196 * 105.20159 * 10 9 7 25 25 H 1.08997 * 109.83805 * 344.38770 * 10 9 7 26 26 H 1.08997 * 109.57740 * 176.98516 * 11 10 9 27 27 H 1.09001 * 109.68392 * 56.65355 * 11 10 9 28 28 H 1.08991 * 109.30272 * 290.96575 * 12 11 10 29 29 H 1.08994 * 109.30321 * 171.57533 * 12 11 10 30 30 H 1.08001 * 119.86702 * 359.80258 * 14 13 12 31 31 H 1.09002 * 109.47257 * 179.97438 * 17 16 15 32 32 H 1.07998 * 120.06596 * 179.80251 * 20 15 14 33 33 H 1.08004 * 119.95575 * 180.29119 * 21 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5477 1.4403 0.7001 7 6 2.0101 -1.2016 0.0005 8 1 3.0660 -1.2156 -0.2259 9 7 1.3565 -2.3689 0.2879 10 6 0.1617 -2.3641 1.1428 11 6 0.2961 -3.5194 2.1434 12 6 0.3173 -4.8396 1.3731 13 6 1.3435 -4.7903 0.2718 14 6 1.8199 -5.9794 -0.2521 15 6 2.7614 -5.9673 -1.2697 16 8 3.2254 -7.1391 -1.7793 17 6 4.1939 -7.0527 -2.8265 18 9 5.3238 -6.3713 -2.3616 19 9 3.6463 -6.3613 -3.9124 20 6 3.2348 -4.7600 -1.7651 21 6 2.7597 -3.5724 -1.2494 22 6 1.8151 -3.5837 -0.2261 23 1 -0.4850 0.8368 -0.0738 24 1 -0.7298 -2.5067 0.5319 25 1 0.0942 -1.4175 1.6788 26 1 -0.5518 -3.5098 2.8283 27 1 1.2225 -3.4107 2.7074 28 1 -0.6667 -5.0204 0.9408 29 1 0.5618 -5.6521 2.0573 30 1 1.4565 -6.9207 0.1331 31 1 4.4794 -8.0566 -3.1411 32 1 3.9705 -4.7508 -2.5556 33 1 3.1235 -2.6323 -1.6370 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065597315.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:16 Heat of formation + Delta-G solvation = -113.702454 kcal Electronic energy + Delta-G solvation = -20728.304527 eV Core-core repulsion = 17196.605156 eV Total energy + Delta-G solvation = -3531.699371 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.097 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -48.98376 -46.99069 -39.42502 -37.92105 -35.10880 -33.59343 -31.61972 -29.33951 -28.48133 -25.79565 -25.49479 -23.34299 -22.14681 -21.30546 -19.42741 -18.03139 -17.53739 -17.39016 -17.31740 -15.91418 -15.17552 -14.80416 -14.48807 -14.10138 -13.78705 -13.49325 -13.40889 -13.24908 -13.13435 -12.81265 -12.69595 -12.50699 -12.08982 -11.91385 -11.58895 -11.28433 -11.13761 -10.83372 -10.65033 -10.42370 -10.18935 -9.96987 -9.59151 -9.15722 -8.41268 -7.91547 -6.51943 -6.32861 -3.76932 2.27766 2.49814 3.13055 3.15900 3.17196 3.21037 3.83799 4.03101 4.57102 4.62884 4.92862 4.96178 5.05098 5.55079 5.67449 5.74123 5.84177 5.88017 6.12909 6.23653 6.34884 6.50223 6.57505 6.71167 6.90666 6.92299 7.05125 7.23370 7.28017 7.37509 7.46782 7.49715 7.87279 8.12671 8.62533 9.25954 9.63835 10.61516 Molecular weight = 269.10amu Principal moments of inertia in cm(-1) A = 0.021908 B = 0.006086 C = 0.005028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.743104 B = 4599.631428 C = 5567.791467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.028 3.972 3 Si 0.923 3.077 4 H -0.277 1.277 5 H -0.281 1.281 6 H -0.269 1.269 7 C -0.302 4.302 8 H 0.092 0.908 9 N -0.446 5.446 10 C 0.146 3.854 11 C -0.144 4.144 12 C -0.057 4.057 13 C -0.176 4.176 14 C -0.072 4.072 15 C -0.029 4.029 16 O -0.329 6.329 17 C 0.412 3.588 18 F -0.206 7.206 19 F -0.206 7.206 20 C -0.130 4.130 21 C -0.175 4.175 22 C 0.203 3.797 23 H 0.270 0.730 24 H 0.051 0.949 25 H 0.090 0.910 26 H 0.063 0.937 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.112 0.888 31 H 0.167 0.833 32 H 0.114 0.886 33 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.594 -9.884 -0.994 10.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.176 4.176 3 Si 0.750 3.250 4 H -0.202 1.202 5 H -0.207 1.207 6 H -0.194 1.194 7 C -0.430 4.430 8 H 0.109 0.891 9 N -0.133 5.133 10 C 0.023 3.977 11 C -0.182 4.182 12 C -0.094 4.094 13 C -0.182 4.182 14 C -0.092 4.092 15 C -0.073 4.073 16 O -0.247 6.247 17 C 0.320 3.680 18 F -0.188 7.188 19 F -0.188 7.188 20 C -0.150 4.150 21 C -0.199 4.199 22 C 0.087 3.913 23 H 0.080 0.920 24 H 0.069 0.931 25 H 0.108 0.892 26 H 0.082 0.918 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.130 0.870 31 H 0.183 0.817 32 H 0.132 0.868 33 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 3.261 -9.537 -0.744 10.106 hybrid contribution 0.554 1.108 -0.392 1.300 sum 3.815 -8.429 -1.136 9.321 Atomic orbital electron populations 1.70001 1.05884 1.27948 1.47374 1.25377 0.95579 0.99784 0.96857 0.85957 0.79361 0.81082 0.78606 1.20239 1.20686 1.19372 1.19515 0.93674 0.83007 1.46831 0.89057 1.42706 1.25628 1.02579 1.42432 1.21414 0.87739 0.97408 0.91161 1.22024 1.01416 0.96328 0.98479 1.20111 0.96979 0.97371 0.94924 1.18755 1.05474 0.90968 1.03014 1.19711 0.96624 0.97081 0.95754 1.18111 1.03999 0.82825 1.02378 1.86421 1.56311 1.31624 1.50389 1.23088 0.76014 0.92029 0.76820 1.93066 1.53321 1.83523 1.88919 1.93071 1.86081 1.83077 1.56543 1.21007 1.01053 0.91967 1.00935 1.20425 1.02919 0.97193 0.99352 1.17812 0.95279 0.86251 0.91940 0.91980 0.93065 0.89195 0.91837 0.92076 0.92195 0.92205 0.86981 0.81678 0.86831 0.85943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.04 11.12 55.49 0.62 -22.42 16 2 C 0.03 0.72 4.99 -17.45 -0.09 0.63 16 3 Si 0.92 19.83 29.58 -169.99 -5.03 14.80 16 4 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 5 H -0.28 -6.00 7.11 56.52 0.40 -5.59 16 6 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 7 C -0.30 -7.85 8.63 -15.13 -0.13 -7.98 16 8 H 0.09 2.34 6.89 -52.48 -0.36 1.98 16 9 N -0.45 -11.14 2.98 -112.52 -0.34 -11.47 16 10 C 0.15 3.34 4.96 -3.60 -0.02 3.32 16 11 C -0.14 -2.69 6.11 -26.58 -0.16 -2.85 16 12 C -0.06 -1.02 5.78 -28.00 -0.16 -1.18 16 13 C -0.18 -3.69 5.76 -104.40 -0.60 -4.29 16 14 C -0.07 -1.42 9.60 -39.37 -0.38 -1.80 16 15 C -0.03 -0.57 6.48 -39.22 -0.25 -0.82 16 16 O -0.33 -5.57 10.43 -19.57 -0.20 -5.77 16 17 C 0.41 5.50 5.98 101.05 0.60 6.11 16 18 F -0.21 -3.12 15.56 2.25 0.04 -3.08 16 19 F -0.21 -3.14 15.59 2.25 0.04 -3.11 16 20 C -0.13 -2.71 8.25 -39.48 -0.33 -3.04 16 21 C -0.18 -4.03 9.19 -39.32 -0.36 -4.39 16 22 C 0.20 4.82 6.33 -83.71 -0.53 4.29 16 23 H 0.27 6.74 8.32 -40.82 -0.34 6.40 16 24 H 0.05 1.23 8.14 -51.93 -0.42 0.80 16 25 H 0.09 2.18 6.46 -51.93 -0.34 1.84 16 26 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 27 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 28 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.06 0.94 8.12 -51.93 -0.42 0.52 16 30 H 0.11 1.91 8.06 -52.49 -0.42 1.49 16 31 H 0.17 1.25 8.14 -51.93 -0.42 0.83 16 32 H 0.11 2.22 5.09 -52.49 -0.27 1.95 16 33 H 0.12 2.85 6.59 -52.48 -0.35 2.51 16 LS Contribution 278.88 15.07 4.20 4.20 Total: -1.00 -28.57 278.88 -6.49 -35.05 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: -3.40 Total: 3.82 kcal Atomic # 6 Polarization: -9.61 SS G_CDS: -2.41 Total: -12.02 kcal Atomic # 7 Polarization: -34.18 SS G_CDS: 0.28 Total: -33.90 kcal Atomic # 8 Polarization: -5.57 SS G_CDS: -0.20 Total: -5.77 kcal Atomic # 9 Polarization: -6.26 SS G_CDS: 0.07 Total: -6.19 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -5.03 Total: 14.80 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -28.57 -6.49 -35.05 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065597315.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.650 kcal (2) G-P(sol) polarization free energy of solvation -28.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds