Wall clock time and date at job start Mon Mar 30 2020 01:53:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86797 * 119.99937 * 2 1 4 4 H 1.48507 * 109.47137 * 239.99690 * 3 2 1 5 5 H 1.48508 * 109.47196 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47552 * 119.99892 * 3 2 1 7 7 C 1.38809 * 120.00152 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00446 * 196.91183 * 7 2 1 9 9 N 1.36937 * 120.00058 * 16.90769 * 7 2 1 10 10 C 1.47152 * 120.98619 * 206.24519 * 9 7 2 11 11 C 1.53293 * 108.38697 * 230.51679 * 10 9 7 12 12 O 1.42961 * 109.22447 * 307.69722 * 11 10 9 13 13 C 1.42964 * 114.16581 * 62.57911 * 12 11 10 14 14 H 1.09003 * 109.55194 * 57.37189 * 13 12 11 15 15 C 1.50704 * 109.51163 * 177.49872 * 13 12 11 16 16 C 1.38249 * 119.96527 * 39.72344 * 15 13 12 17 17 C 1.38213 * 120.06907 * 179.97438 * 16 15 13 18 18 C 1.38411 * 120.00131 * 0.02562 * 17 16 15 19 19 F 1.35102 * 120.03485 * 180.02562 * 18 17 16 20 20 C 1.38646 * 119.92563 * 359.76410 * 18 17 16 21 21 F 1.35109 * 120.03343 * 180.25210 * 20 18 17 22 22 C 1.38215 * 119.96114 * 219.74826 * 15 13 12 23 23 C 1.47158 * 120.97948 * 26.22827 * 9 7 2 24 24 H 0.96996 * 120.00343 * 0.02562 * 1 2 3 25 25 H 1.08995 * 109.68142 * 350.24281 * 10 9 7 26 26 H 1.09004 * 109.68051 * 110.75452 * 10 9 7 27 27 H 1.08997 * 109.51325 * 67.62477 * 11 10 9 28 28 H 1.09004 * 109.51071 * 187.77581 * 11 10 9 29 29 H 1.08007 * 119.96811 * 359.97438 * 16 15 13 30 30 H 1.08007 * 119.99745 * 179.97438 * 17 16 15 31 31 H 1.08000 * 119.99925 * 359.97438 * 22 15 13 32 32 H 1.08997 * 109.68387 * 9.76299 * 23 9 7 33 33 H 1.09002 * 109.71048 * 249.22231 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0553 -1.2223 0.2726 9 7 1.3700 -2.3626 -0.3438 10 6 1.8340 -3.6633 0.1642 11 6 1.9812 -4.6216 -1.0232 12 8 0.7648 -4.6307 -1.7743 13 6 0.4243 -3.3681 -2.3520 14 1 1.2370 -3.0300 -2.9948 15 6 -0.8357 -3.5108 -3.1665 16 6 -1.8717 -4.3003 -2.7033 17 6 -3.0284 -4.4322 -3.4483 18 6 -3.1502 -3.7739 -4.6597 19 9 -4.2807 -3.9019 -5.3882 20 6 -2.1129 -2.9786 -5.1221 21 9 -2.2315 -2.3309 -6.3019 22 6 -0.9539 -2.8524 -4.3760 23 6 0.1973 -2.3456 -1.2327 24 1 -0.4850 0.8400 -0.0004 25 1 2.7974 -3.5415 0.6593 26 1 1.1061 -4.0623 0.8707 27 1 2.8002 -4.2885 -1.6606 28 1 2.1900 -5.6266 -0.6562 29 1 -1.7771 -4.8146 -1.7583 30 1 -3.8369 -5.0496 -3.0855 31 1 -0.1438 -2.2360 -4.7368 32 1 0.0769 -1.3513 -1.6627 33 1 -0.6960 -2.6119 -0.6678 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000066850183.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:42 Heat of formation + Delta-G solvation = -99.347151 kcal Electronic energy + Delta-G solvation = -20516.517911 eV Core-core repulsion = 16985.441032 eV Total energy + Delta-G solvation = -3531.076879 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.097 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -50.52558 -49.60628 -40.79971 -39.20343 -36.30842 -33.63519 -33.15730 -31.85258 -30.12377 -28.51118 -25.50017 -24.99519 -24.23661 -22.76279 -21.32473 -19.13846 -18.81672 -18.26953 -18.03487 -17.38394 -17.17958 -16.46274 -16.28101 -16.03266 -15.95739 -15.51464 -15.46594 -15.12881 -14.97826 -14.54768 -14.24840 -13.86705 -13.25498 -13.08765 -12.95728 -12.66177 -12.51744 -12.40610 -12.17744 -12.11325 -11.85943 -11.31813 -10.83492 -10.55679 -10.09506 -9.69626 -8.73399 -7.91034 -5.37862 -0.16276 -0.01241 1.46827 1.49016 1.55591 2.27661 2.48574 2.62329 2.87978 3.24202 3.31847 3.45544 3.61267 3.83841 4.01325 4.11214 4.22037 4.31545 4.46972 4.59452 4.65833 4.73146 4.78882 4.86657 4.95584 5.03082 5.10976 5.23564 5.37569 5.55501 5.60893 5.71083 6.26340 6.33117 7.06084 7.75093 8.28078 9.14080 Molecular weight = 269.10amu Principal moments of inertia in cm(-1) A = 0.019973 B = 0.005868 C = 0.004969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.532513 B = 4770.812035 C = 5634.054720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.047 4.047 3 Si 0.966 3.034 4 H -0.277 1.277 5 H -0.295 1.295 6 H -0.274 1.274 7 C -0.268 4.268 8 H 0.073 0.927 9 N -0.615 5.615 10 C 0.102 3.898 11 C 0.056 3.944 12 O -0.386 6.386 13 C 0.118 3.882 14 H 0.063 0.937 15 C -0.058 4.058 16 C -0.073 4.073 17 C -0.113 4.113 18 C 0.055 3.945 19 F -0.135 7.135 20 C 0.055 3.945 21 F -0.137 7.137 22 C -0.118 4.118 23 C 0.166 3.834 24 H 0.251 0.749 25 H 0.072 0.928 26 H 0.022 0.978 27 H 0.050 0.950 28 H 0.125 0.875 29 H 0.151 0.849 30 H 0.177 0.823 31 H 0.153 0.847 32 H 0.064 0.936 33 H 0.007 0.993 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.100 -9.865 -7.003 12.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.243 4.243 3 Si 0.794 3.206 4 H -0.203 1.203 5 H -0.222 1.222 6 H -0.200 1.200 7 C -0.397 4.397 8 H 0.091 0.909 9 N -0.339 5.339 10 C -0.023 4.023 11 C -0.022 4.022 12 O -0.305 6.305 13 C 0.059 3.941 14 H 0.081 0.919 15 C -0.059 4.059 16 C -0.091 4.091 17 C -0.131 4.131 18 C 0.035 3.965 19 F -0.113 7.113 20 C 0.035 3.965 21 F -0.115 7.115 22 C -0.137 4.137 23 C 0.040 3.960 24 H 0.060 0.940 25 H 0.090 0.910 26 H 0.040 0.960 27 H 0.068 0.932 28 H 0.143 0.857 29 H 0.168 0.832 30 H 0.195 0.805 31 H 0.171 0.829 32 H 0.083 0.917 33 H 0.025 0.975 Dipole moment (debyes) X Y Z Total from point charges -2.340 -9.865 -7.067 12.359 hybrid contribution 0.187 1.577 -0.111 1.591 sum -2.153 -8.288 -7.178 11.174 Atomic orbital electron populations 1.70155 1.06617 1.26099 1.54950 1.25784 0.96046 1.01483 1.00993 0.85359 0.77602 0.79153 0.78462 1.20276 1.22173 1.19979 1.19507 0.93083 0.85611 1.41520 0.90914 1.44385 1.33856 1.02427 1.53256 1.21837 0.98774 0.86317 0.95401 1.23123 0.85649 1.01000 0.92404 1.87773 1.42981 1.30299 1.69442 1.21392 0.93341 0.85615 0.93732 0.91886 1.19565 0.95986 0.96955 0.93376 1.21107 0.91069 0.96602 1.00301 1.21324 1.00014 1.00120 0.91666 1.17818 0.83165 1.02115 0.93404 1.91497 1.48289 1.94736 1.76812 1.17625 0.95941 0.98382 0.84578 1.91494 1.96323 1.79638 1.44094 1.20927 0.97239 1.01346 0.94145 1.21152 0.88320 0.97143 0.89388 0.93970 0.90955 0.96016 0.93170 0.85731 0.83172 0.80515 0.82939 0.91719 0.97500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.77 11.14 21.65 0.24 -53.53 16 2 C -0.05 -2.56 4.95 84.86 0.42 -2.14 16 3 Si 0.97 43.57 29.59 68.60 2.03 45.60 16 4 H -0.28 -12.09 7.11 99.48 0.71 -11.39 16 5 H -0.30 -13.51 7.11 99.48 0.71 -12.81 16 6 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 7 C -0.27 -14.18 9.65 84.03 0.81 -13.37 16 8 H 0.07 3.71 7.88 -2.91 -0.02 3.69 16 9 N -0.61 -29.81 3.05 -697.53 -2.13 -31.94 16 10 C 0.10 3.95 6.73 86.35 0.58 4.53 16 11 C 0.06 1.73 6.98 72.08 0.50 2.23 16 12 O -0.39 -13.24 9.70 -148.98 -1.44 -14.68 16 13 C 0.12 4.34 2.98 29.95 0.09 4.43 16 14 H 0.06 2.32 8.01 -2.39 -0.02 2.30 16 15 C -0.06 -1.85 4.98 -19.87 -0.10 -1.95 16 16 C -0.07 -2.03 9.34 22.27 0.21 -1.82 16 17 C -0.11 -2.71 10.02 22.31 0.22 -2.49 16 18 C 0.06 1.51 7.31 22.41 0.16 1.68 16 19 F -0.13 -3.72 17.18 44.97 0.77 -2.94 16 20 C 0.05 1.62 7.31 22.41 0.16 1.79 16 21 F -0.14 -4.17 17.18 44.97 0.77 -3.40 16 22 C -0.12 -3.54 9.65 22.30 0.22 -3.33 16 23 C 0.17 7.72 4.71 86.35 0.41 8.12 16 24 H 0.25 14.14 8.31 -92.71 -0.77 13.37 16 25 H 0.07 2.62 7.96 -2.39 -0.02 2.61 16 26 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.12 2.92 8.14 -2.38 -0.02 2.90 16 29 H 0.15 4.01 7.77 -2.91 -0.02 3.99 16 30 H 0.18 3.03 8.06 -2.91 -0.02 3.00 16 31 H 0.15 4.24 8.04 -2.91 -0.02 4.22 16 32 H 0.06 3.41 6.14 -2.39 -0.01 3.39 16 33 H 0.01 0.35 8.12 -2.39 -0.02 0.33 16 Total: -1.00 -61.52 288.48 5.06 -56.47 By element: Atomic # 1 Polarization: 5.61 SS G_CDS: 1.13 Total: 6.74 kcal Atomic # 6 Polarization: -6.00 SS G_CDS: 3.69 Total: -2.31 kcal Atomic # 7 Polarization: -83.58 SS G_CDS: -1.89 Total: -85.46 kcal Atomic # 8 Polarization: -13.24 SS G_CDS: -1.44 Total: -14.68 kcal Atomic # 9 Polarization: -7.89 SS G_CDS: 1.55 Total: -6.34 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Total: -61.52 5.06 -56.47 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066850183.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.881 kcal (2) G-P(sol) polarization free energy of solvation -61.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds