Wall clock time and date at job start Mon Mar 30 2020 01:58:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.43204 * 119.99715 * 149.41421 * 3 2 1 5 5 N 3.51035 * 140.68895 * 149.41417 * 2 1 3 6 6 C 1.37708 * 119.99854 * 329.41842 * 3 2 1 7 7 N 1.35942 * 120.00251 * 0.02562 * 6 3 2 8 8 C 1.46508 * 120.00178 * 180.02562 * 7 6 3 9 9 C 1.50695 * 109.47103 * 179.97438 * 8 7 6 10 10 C 1.38299 * 119.93247 * 90.00118 * 9 8 7 11 11 C 1.38101 * 120.07425 * 179.97438 * 10 9 8 12 12 C 1.38886 * 119.92536 * 0.02562 * 11 10 9 13 13 O 1.35750 * 120.06440 * 180.02562 * 12 11 10 14 14 C 1.34828 * 117.00075 * 5.53777 * 13 12 11 15 15 H 1.07993 * 120.00518 * 354.94289 * 14 13 12 16 16 C 1.38663 * 119.99751 * 174.94575 * 14 13 12 17 17 N 1.31556 * 120.00220 * 359.97438 * 16 14 13 18 18 Si 1.86795 * 119.99821 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47448 * 89.99502 * 18 16 14 20 20 H 1.48501 * 109.47175 * 209.99712 * 18 16 14 21 21 H 1.48506 * 109.47415 * 329.99678 * 18 16 14 22 22 C 1.38874 * 119.86623 * 0.27854 * 12 11 10 23 23 C 1.38106 * 119.92542 * 359.44577 * 22 12 11 24 24 H 1.08002 * 119.99508 * 179.97438 * 6 3 2 25 25 H 0.97001 * 120.00347 * 359.97438 * 7 6 3 26 26 H 1.08998 * 109.46632 * 60.00053 * 8 7 6 27 27 H 1.08996 * 109.47144 * 299.99784 * 8 7 6 28 28 H 1.07999 * 119.96503 * 0.02562 * 10 9 8 29 29 H 1.07992 * 120.03608 * 180.02562 * 11 10 9 30 30 H 0.96996 * 120.00178 * 179.97438 * 17 16 14 31 31 H 1.07996 * 120.03745 * 179.72497 * 22 12 11 32 32 H 1.07997 * 119.96326 * 180.27708 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2835 1.0686 -0.6311 5 7 3.8520 1.9145 -1.1316 6 6 3.2569 -1.0258 0.6068 7 7 2.5777 -2.0399 1.2053 8 6 3.3107 -3.1316 1.8513 9 6 2.3319 -4.1182 2.4339 10 6 1.8844 -5.1800 1.6690 11 6 0.9878 -6.0861 2.2002 12 6 0.5350 -5.9299 3.5039 13 8 -0.3459 -6.8192 4.0290 14 6 -0.6538 -7.8938 3.2751 15 1 -0.2694 -7.9758 2.2692 16 6 -1.4641 -8.8937 3.7913 17 7 -1.9320 -8.7941 5.0168 18 14 -1.8900 -10.3828 2.7471 19 1 -0.8714 -11.4427 2.9575 20 1 -3.2270 -10.8963 3.1392 21 1 -1.9101 -9.9932 1.3141 22 6 0.9813 -4.8591 4.2673 23 6 1.8824 -3.9596 3.7322 24 1 4.3370 -1.0254 0.6064 25 1 1.6077 -2.0404 1.2053 26 1 3.9365 -2.7279 2.6472 27 1 3.9382 -3.6336 1.1149 28 1 2.2371 -5.3011 0.6555 29 1 0.6391 -6.9152 1.6026 30 1 -2.4991 -9.4933 5.3777 31 1 0.6277 -4.7325 5.2798 32 1 2.2333 -3.1292 4.3269 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000067890553.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:41 Heat of formation + Delta-G solvation = 45.081263 kcal Electronic energy + Delta-G solvation = -17907.428336 eV Core-core repulsion = 14833.303530 eV Total energy + Delta-G solvation = -3074.124806 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.090 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.87279 -39.49132 -38.34691 -37.08217 -36.86270 -34.38755 -33.08233 -31.79902 -30.60628 -27.64428 -26.16815 -23.86015 -23.64650 -22.30110 -20.87774 -19.89211 -19.03695 -18.48392 -16.55001 -16.50969 -16.29270 -15.83565 -15.52461 -15.43196 -15.12731 -14.90294 -14.59444 -14.37173 -14.30475 -13.93061 -13.85087 -13.81918 -13.53527 -13.24827 -13.03904 -12.94730 -12.49526 -12.40807 -12.23033 -12.12512 -11.70234 -11.18052 -10.82977 -9.78917 -9.02432 -8.74897 -8.50440 -6.18776 0.45417 0.54485 0.60587 1.34412 1.42578 1.51334 1.61734 1.96782 1.98704 2.15477 2.41088 2.86209 2.96887 3.17681 3.34930 3.50213 3.66645 3.90085 4.07917 4.19421 4.39736 4.54990 4.58722 4.74350 4.84443 4.89517 5.08013 5.14292 5.29193 5.54412 5.71330 5.73976 5.97181 6.00702 6.20345 6.23463 6.72869 6.92712 6.94696 7.74933 8.72537 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.032518 B = 0.003118 C = 0.003047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.860857 B = 8977.360621 C = 9187.796651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C 0.289 3.711 3 C -0.216 4.216 4 C 0.319 3.681 5 N -0.502 5.502 6 C 0.349 3.651 7 N -0.682 5.682 8 C 0.164 3.836 9 C -0.194 4.194 10 C -0.044 4.044 11 C -0.253 4.253 12 C 0.119 3.881 13 O -0.233 6.233 14 C -0.413 4.413 15 H 0.104 0.896 16 C -0.023 4.023 17 N -0.920 5.920 18 Si 1.017 2.983 19 H -0.261 1.261 20 H -0.274 1.274 21 H -0.253 1.253 22 C -0.215 4.215 23 C -0.042 4.042 24 H 0.231 0.769 25 H 0.400 0.600 26 H 0.120 0.880 27 H 0.118 0.882 28 H 0.149 0.851 29 H 0.114 0.886 30 H 0.273 0.727 31 H 0.108 0.892 32 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.748 8.456 -6.981 19.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.187 5.187 2 C -0.023 4.023 3 C -0.237 4.237 4 C 0.006 3.994 5 N -0.182 5.182 6 C 0.199 3.801 7 N -0.292 5.292 8 C 0.043 3.957 9 C -0.195 4.195 10 C -0.062 4.062 11 C -0.272 4.272 12 C 0.068 3.932 13 O -0.139 6.139 14 C -0.489 4.489 15 H 0.121 0.879 16 C -0.221 4.221 17 N -0.558 5.558 18 Si 0.837 3.163 19 H -0.186 1.186 20 H -0.199 1.199 21 H -0.176 1.176 22 C -0.235 4.235 23 C -0.060 4.060 24 H 0.248 0.752 25 H 0.236 0.764 26 H 0.138 0.862 27 H 0.136 0.864 28 H 0.167 0.833 29 H 0.132 0.868 30 H 0.082 0.918 31 H 0.126 0.874 32 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 14.766 9.378 -7.238 18.931 hybrid contribution -1.383 -1.189 0.171 1.831 sum 13.383 8.190 -7.067 17.208 Atomic orbital electron populations 1.81363 1.13864 1.09679 1.13792 1.25590 0.92460 0.92651 0.91586 1.12468 0.81504 1.01839 1.27906 1.24639 0.92375 0.91473 0.90918 1.81302 1.10029 1.12157 1.14680 1.22660 0.99944 0.79928 0.77547 1.45457 1.10915 1.21471 1.51387 1.20772 0.91522 0.84481 0.98887 1.19656 1.05286 0.99673 0.94863 1.21105 0.93190 0.92230 0.99723 1.21303 1.05785 1.04506 0.95647 1.20117 0.88979 0.90710 0.93427 1.83942 1.53704 1.31427 1.44831 1.21825 1.32049 0.96874 0.98161 0.87886 1.26591 0.95837 1.01766 0.97866 1.70175 1.33402 1.35457 1.16739 0.84599 0.78151 0.75739 0.77845 1.18622 1.19856 1.17623 1.20529 1.04950 0.97465 1.00513 1.21047 0.93072 0.96640 0.95249 0.75233 0.76440 0.86173 0.86414 0.83345 0.86770 0.91812 0.87380 0.82552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -14.47 18.54 19.00 0.35 -14.12 16 2 C 0.29 6.04 13.95 88.33 1.23 7.27 16 3 C -0.22 -2.55 5.78 -20.91 -0.12 -2.67 16 4 C 0.32 5.34 15.33 88.34 1.35 6.70 16 5 N -0.50 -11.51 18.53 19.00 0.35 -11.15 16 6 C 0.35 0.89 10.25 83.93 0.86 1.75 16 7 N -0.68 -4.43 5.50 -348.95 -1.92 -6.35 16 8 C 0.16 0.88 6.37 85.63 0.55 1.42 16 9 C -0.19 -3.64 5.25 -19.84 -0.10 -3.75 16 10 C -0.04 -1.10 9.69 22.25 0.22 -0.89 16 11 C -0.25 -9.55 9.17 22.39 0.21 -9.35 16 12 C 0.12 5.37 6.65 22.58 0.15 5.52 16 13 O -0.23 -13.40 9.76 -22.72 -0.22 -13.62 16 14 C -0.41 -23.11 9.49 67.92 0.64 -22.47 16 15 H 0.10 5.23 5.20 -2.91 -0.02 5.22 16 16 C -0.02 -1.26 5.49 84.84 0.47 -0.80 16 17 N -0.92 -55.27 13.67 21.62 0.30 -54.97 16 18 Si 1.02 41.46 29.55 68.60 2.03 43.48 16 19 H -0.26 -10.05 7.11 99.48 0.71 -9.35 16 20 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 21 H -0.25 -9.52 7.11 99.48 0.71 -8.82 16 22 C -0.22 -7.94 9.99 22.39 0.22 -7.71 16 23 C -0.04 -1.00 9.69 22.25 0.22 -0.79 16 24 H 0.23 -1.82 8.06 -2.91 -0.02 -1.84 16 25 H 0.40 5.06 7.15 -92.71 -0.66 4.40 16 26 H 0.12 -0.01 8.08 -2.39 -0.02 -0.03 16 27 H 0.12 0.04 8.08 -2.39 -0.02 0.02 16 28 H 0.15 2.61 8.06 -2.91 -0.02 2.59 16 29 H 0.11 4.56 5.64 -2.91 -0.02 4.54 16 30 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 31 H 0.11 4.11 8.06 -2.91 -0.02 4.08 16 32 H 0.16 2.50 8.06 -2.91 -0.02 2.47 16 Total: -1.00 -82.37 308.68 7.30 -75.07 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: 0.52 Total: 7.40 kcal Atomic # 6 Polarization: -31.63 SS G_CDS: 5.89 Total: -25.74 kcal Atomic # 7 Polarization: -85.67 SS G_CDS: -0.92 Total: -86.59 kcal Atomic # 8 Polarization: -13.40 SS G_CDS: -0.22 Total: -13.62 kcal Atomic # 14 Polarization: 41.46 SS G_CDS: 2.03 Total: 43.48 kcal Total: -82.37 7.30 -75.07 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067890553.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.155 kcal (2) G-P(sol) polarization free energy of solvation -82.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.074 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds