Wall clock time and date at job start Mon Mar 30 2020 01:59:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86801 * 120.00245 * 2 1 4 4 H 1.48509 * 109.46952 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46916 * 299.99405 * 3 2 1 6 6 H 1.48502 * 109.47143 * 59.99565 * 3 2 1 7 7 C 1.37880 * 119.99988 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00111 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99852 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.47439 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.47477 * 180.02562 * 10 9 7 12 12 N 1.46500 * 109.47375 * 179.97438 * 11 10 9 13 13 C 1.34778 * 120.00282 * 179.97438 * 12 11 10 14 14 O 1.21569 * 119.99855 * 0.02562 * 13 12 11 15 15 C 1.47727 * 120.00078 * 180.02562 * 13 12 11 16 16 C 1.39647 * 120.11032 * 359.97438 * 15 13 12 17 17 C 1.37851 * 119.92663 * 179.97438 * 16 15 13 18 18 C 1.38611 * 120.14691 * 0.03045 * 17 16 15 19 19 F 1.35101 * 119.88748 * 180.27877 * 18 17 16 20 20 C 1.38835 * 120.21757 * 359.97438 * 18 17 16 21 21 F 1.35098 * 119.96034 * 180.02562 * 20 18 17 22 22 C 1.38050 * 120.07440 * 359.97438 * 20 18 17 23 23 H 0.97002 * 119.99782 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.47222 * 59.99223 * 9 7 2 25 25 H 1.09002 * 109.47314 * 299.99906 * 9 7 2 26 26 H 1.09001 * 109.47224 * 59.99621 * 10 9 7 27 27 H 1.09004 * 109.46803 * 299.99722 * 10 9 7 28 28 H 1.09000 * 109.47686 * 59.99893 * 11 10 9 29 29 H 1.09004 * 109.46825 * 299.99645 * 11 10 9 30 30 H 0.97005 * 119.99990 * 0.02562 * 12 11 10 31 31 H 1.08008 * 120.03895 * 0.02562 * 16 15 13 32 32 H 1.08001 * 119.92725 * 180.02562 * 17 16 15 33 33 H 1.08002 * 120.07427 * 180.02562 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4801 -4.9871 -0.0001 12 7 2.4320 -6.1007 -0.0007 13 6 1.9827 -7.3713 -0.0008 14 8 0.7875 -7.5934 -0.0009 15 6 2.9426 -8.4942 -0.0009 16 6 4.3161 -8.2417 -0.0014 17 6 5.2085 -9.2924 -0.0009 18 6 4.7456 -10.5989 -0.0006 19 9 5.6248 -11.6247 0.0056 20 6 3.3814 -10.8569 -0.0002 21 9 2.9360 -12.1323 0.0007 22 6 2.4797 -9.8116 0.0004 23 1 -0.4850 0.8401 -0.0004 24 1 0.6245 -2.5570 -0.8896 25 1 0.6239 -2.5567 0.8903 26 1 2.8718 -3.6044 0.8905 27 1 2.8717 -3.6044 -0.8895 28 1 0.8537 -5.0446 -0.8903 29 1 0.8531 -5.0450 0.8897 30 1 3.3857 -5.9235 -0.0003 31 1 4.6788 -7.2244 -0.0013 32 1 6.2707 -9.0971 -0.0008 33 1 1.4185 -10.0122 0.0011 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070940494.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:59 Heat of formation + Delta-G solvation = -117.292613 kcal Electronic energy + Delta-G solvation = -18906.276143 eV Core-core repulsion = 15374.421091 eV Total energy + Delta-G solvation = -3531.855052 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.097 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.87896 -48.94590 -40.34581 -38.32546 -35.59837 -33.48063 -31.77648 -31.46064 -30.52080 -26.91989 -24.49347 -23.57004 -22.84886 -20.93468 -20.38267 -18.67119 -17.85660 -17.51023 -16.72762 -16.66199 -16.21394 -15.60262 -15.46605 -15.33702 -14.89050 -14.52814 -14.48519 -14.04214 -14.01571 -13.36717 -13.05943 -12.46971 -12.35395 -11.91177 -11.78811 -11.76852 -10.96481 -10.81733 -10.62689 -10.18262 -9.94838 -9.60608 -9.49328 -9.26252 -9.16479 -8.91903 -8.42078 -6.06411 -4.09752 0.10410 0.51760 2.37768 3.01204 3.26913 3.31618 3.31879 3.34791 3.37816 3.89171 4.06521 4.35931 4.40278 4.41845 4.60921 5.15303 5.29626 5.29693 5.34867 5.46313 5.59281 5.67635 5.68048 6.05992 6.19415 6.30102 6.50288 6.70816 6.91473 7.47802 7.58200 7.69719 7.91913 8.12595 8.32751 8.97125 9.54889 11.04886 Molecular weight = 269.10amu Principal moments of inertia in cm(-1) A = 0.045143 B = 0.002806 C = 0.002648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.108938 B = 9977.717103 C =10572.075559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.523 4.523 8 H 0.056 0.944 9 C 0.023 3.977 10 C -0.122 4.122 11 C 0.115 3.885 12 N -0.716 5.716 13 C 0.552 3.448 14 O -0.533 6.533 15 C -0.109 4.109 16 C -0.068 4.068 17 C -0.131 4.131 18 C 0.088 3.912 19 F -0.125 7.125 20 C 0.062 3.938 21 F -0.125 7.125 22 C -0.069 4.069 23 H 0.261 0.739 24 H 0.019 0.981 25 H 0.020 0.980 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.398 0.602 31 H 0.147 0.853 32 H 0.154 0.846 33 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.883 -19.797 -0.002 22.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.561 4.561 8 H 0.074 0.926 9 C -0.014 4.014 10 C -0.160 4.160 11 C -0.007 4.007 12 N -0.367 5.367 13 C 0.338 3.662 14 O -0.411 6.411 15 C -0.113 4.113 16 C -0.086 4.086 17 C -0.149 4.149 18 C 0.067 3.933 19 F -0.103 7.103 20 C 0.041 3.959 21 F -0.103 7.103 22 C -0.089 4.089 23 H 0.071 0.929 24 H 0.038 0.962 25 H 0.038 0.962 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.234 0.766 31 H 0.165 0.835 32 H 0.172 0.828 33 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 9.868 -19.889 -0.002 22.203 hybrid contribution 1.005 0.599 0.000 1.170 sum 10.873 -19.290 -0.002 22.143 Atomic orbital electron populations 1.69970 1.06075 1.26647 1.50516 1.25032 0.94858 0.99349 0.95230 0.86528 0.80035 0.83732 0.77636 1.19743 1.20982 1.20985 1.21227 0.93023 0.90897 1.50988 0.92570 1.19035 0.93839 0.90817 0.97742 1.21907 0.99847 0.93213 1.00988 1.21750 0.91783 0.84761 1.02429 1.46139 1.11081 1.05642 1.73815 1.17993 0.87896 0.82861 0.77483 1.90813 1.15928 1.84686 1.49633 1.19982 0.93771 0.93625 1.03903 1.21324 0.91445 0.99963 0.95918 1.21042 1.01999 0.89508 1.02377 1.17938 0.85418 0.85664 1.04274 1.91555 1.67646 1.57501 1.93622 1.17504 0.90693 0.80213 1.07449 1.91559 1.89579 1.35141 1.94044 1.21199 1.01281 0.89947 0.96428 0.92931 0.96214 0.96207 0.92600 0.92606 0.91334 0.91332 0.76648 0.83494 0.82833 0.82181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.30 13.29 55.43 0.74 -25.56 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.89 21.01 29.54 -169.99 -5.02 15.99 16 4 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 5 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.52 -14.17 9.11 -34.44 -0.31 -14.48 16 8 H 0.06 1.46 7.74 -52.49 -0.41 1.06 16 9 C 0.02 0.57 4.97 -27.89 -0.14 0.43 16 10 C -0.12 -2.21 5.27 -26.74 -0.14 -2.35 16 11 C 0.11 1.86 5.67 -4.04 -0.02 1.84 16 12 N -0.72 -9.08 5.51 -61.29 -0.34 -9.42 16 13 C 0.55 7.47 7.77 -12.38 -0.10 7.37 16 14 O -0.53 -9.29 16.34 5.30 0.09 -9.20 16 15 C -0.11 -1.12 5.87 -104.97 -0.62 -1.74 16 16 C -0.07 -0.49 9.53 -39.20 -0.37 -0.87 16 17 C -0.13 -0.89 10.01 -39.59 -0.40 -1.29 16 18 C 0.09 0.79 7.31 -39.22 -0.29 0.50 16 19 F -0.12 -1.22 17.17 2.25 0.04 -1.18 16 20 C 0.06 0.61 7.30 -39.43 -0.29 0.33 16 21 F -0.12 -1.37 17.18 2.25 0.04 -1.33 16 22 C -0.07 -0.71 9.57 -39.13 -0.37 -1.08 16 23 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 24 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 27 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 29 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.40 3.76 6.50 -40.82 -0.27 3.49 16 31 H 0.15 0.71 6.40 -52.48 -0.34 0.37 16 32 H 0.15 0.65 8.06 -52.49 -0.42 0.23 16 33 H 0.16 1.66 7.65 -52.49 -0.40 1.26 16 LS Contribution 301.69 15.07 4.55 4.55 Total: -1.00 -31.67 301.69 -6.56 -38.23 By element: Atomic # 1 Polarization: 1.28 SS G_CDS: -3.50 Total: -2.22 kcal Atomic # 6 Polarization: -6.71 SS G_CDS: -3.14 Total: -9.86 kcal Atomic # 7 Polarization: -35.38 SS G_CDS: 0.40 Total: -34.98 kcal Atomic # 8 Polarization: -9.29 SS G_CDS: 0.09 Total: -9.20 kcal Atomic # 9 Polarization: -2.58 SS G_CDS: 0.08 Total: -2.50 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -31.67 -6.56 -38.23 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070940494.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.064 kcal (2) G-P(sol) polarization free energy of solvation -31.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds