Wall clock time and date at job start Mon Mar 30 2020 00:40:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35784 * 117.00631 * 2 1 4 4 C 1.38030 * 123.46544 * 0.19212 * 3 2 1 5 5 C 1.33609 * 115.08329 * 180.27175 * 4 3 2 6 6 C 1.50702 * 124.42821 * 179.74823 * 5 4 3 7 7 S 1.70577 * 111.14765 * 359.75358 * 5 4 3 8 8 C 1.37269 * 123.47555 * 179.97438 * 3 2 1 9 9 C 1.41715 * 125.47437 * 0.02562 * 8 3 2 10 10 O 1.21774 * 119.99978 * 359.71791 * 9 8 3 11 11 N 1.34777 * 119.99949 * 179.72076 * 9 8 3 12 12 C 1.46506 * 120.00033 * 180.02562 * 11 9 8 13 13 H 1.08998 * 109.46566 * 324.99334 * 12 11 9 14 14 C 1.52997 * 109.47289 * 84.99600 * 12 11 9 15 15 C 1.50697 * 109.47015 * 205.00057 * 12 11 9 16 16 H 1.07998 * 120.00039 * 359.97438 * 15 12 11 17 17 C 1.37880 * 119.99815 * 179.97438 * 15 12 11 18 18 N 1.31508 * 119.99915 * 359.97438 * 17 15 12 19 19 Si 1.86805 * 119.99777 * 179.97438 * 17 15 12 20 20 H 1.48497 * 109.47155 * 89.99872 * 19 17 15 21 21 H 1.48499 * 109.47102 * 210.00327 * 19 17 15 22 22 H 1.48499 * 109.46909 * 330.00049 * 19 17 15 23 23 H 1.09004 * 109.46979 * 60.00535 * 1 2 3 24 24 H 1.08997 * 109.47200 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47560 * 300.00685 * 1 2 3 26 26 H 1.07997 * 122.45703 * 0.03318 * 4 3 2 27 27 H 1.09001 * 109.47281 * 180.02562 * 6 5 4 28 28 H 1.08996 * 109.47087 * 300.03171 * 6 5 4 29 29 H 1.08998 * 109.46433 * 60.02773 * 6 5 4 30 30 H 0.96992 * 119.99904 * 359.97438 * 11 9 8 31 31 H 1.09002 * 109.47153 * 179.97438 * 14 12 11 32 32 H 1.09001 * 109.46832 * 60.00146 * 14 12 11 33 33 H 1.09004 * 109.47261 * 300.00128 * 14 12 11 34 34 H 0.97001 * 119.99839 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0455 1.2098 0.0000 4 6 1.3652 2.4108 0.0039 5 6 2.1390 3.5000 -0.0025 6 6 1.6190 4.9145 -0.0054 7 16 3.7923 3.0804 -0.0071 8 6 3.4095 1.3644 0.0005 9 6 4.3567 0.3104 0.0006 10 8 3.9793 -0.8474 0.0054 11 7 5.6753 0.5893 -0.0046 12 6 6.6545 -0.5004 -0.0051 13 1 6.2732 -1.3317 0.5879 14 6 6.8970 -0.9676 -1.4417 15 6 7.9500 -0.0118 0.5898 16 1 8.0356 1.0085 0.9334 17 6 9.0261 -0.8673 0.6953 18 7 8.9218 -2.1099 0.2773 19 14 10.6323 -0.2614 1.4320 20 1 10.6222 -0.4920 2.8990 21 1 11.7666 -1.0010 0.8224 22 1 10.7849 1.1905 1.1603 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 0.2867 2.4660 0.0077 27 1 2.4581 5.6101 -0.0112 28 1 1.0078 5.0750 -0.8935 29 1 1.0149 5.0812 0.8864 30 1 5.9759 1.5114 -0.0087 31 1 7.6259 -1.7780 -1.4420 32 1 7.2783 -0.1362 -2.0346 33 1 5.9599 -1.3210 -1.8719 34 1 9.6787 -2.7118 0.3519 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072785662.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:40:20 Heat of formation + Delta-G solvation = -69.787589 kcal Electronic energy + Delta-G solvation = -18199.300756 eV Core-core repulsion = 15223.346062 eV Total energy + Delta-G solvation = -2975.954693 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.087 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.28425 -40.04619 -37.35908 -36.65571 -34.35527 -32.91044 -30.97683 -28.81806 -27.67301 -27.31786 -24.24024 -23.47887 -21.67269 -20.56480 -19.57706 -18.35518 -17.80203 -17.09798 -16.94025 -16.85319 -15.91961 -15.68344 -15.29759 -14.87809 -14.68057 -14.49606 -14.41620 -13.75755 -13.54350 -13.14717 -13.12745 -12.90368 -12.85038 -12.71878 -12.39577 -12.28025 -12.11448 -11.84655 -11.78146 -11.13020 -10.86292 -10.59525 -9.92535 -9.57132 -9.04010 -8.17358 -6.35804 -0.49448 0.43508 0.81533 1.34477 1.45027 1.46735 1.57694 2.35972 2.40778 2.53822 2.69844 3.12680 3.62141 4.09054 4.21102 4.31356 4.37550 4.38246 4.62980 4.70700 4.75028 4.78781 4.89744 4.94024 5.06930 5.10662 5.26066 5.42001 5.59319 5.66049 5.89630 6.07674 6.32874 6.70569 6.93119 7.30884 7.52173 8.89628 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.026343 B = 0.005033 C = 0.004395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.629616 B = 5561.713677 C = 6369.140079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.313 6.313 3 C 0.186 3.814 4 C -0.229 4.229 5 C -0.143 4.143 6 C -0.087 4.087 7 S 0.250 5.750 8 C -0.379 4.379 9 C 0.575 3.425 10 O -0.593 6.593 11 N -0.708 5.708 12 C 0.272 3.728 13 H -0.004 1.004 14 C -0.131 4.131 15 C -0.549 4.549 16 H 0.072 0.928 17 C 0.014 3.986 18 N -0.918 5.918 19 Si 0.978 3.022 20 H -0.277 1.277 21 H -0.281 1.281 22 H -0.258 1.258 23 H 0.076 0.924 24 H 0.109 0.891 25 H 0.075 0.925 26 H 0.181 0.819 27 H 0.084 0.916 28 H 0.102 0.898 29 H 0.101 0.899 30 H 0.396 0.604 31 H 0.070 0.930 32 H 0.041 0.959 33 H 0.007 0.993 34 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.640 16.978 -0.956 23.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.226 6.226 3 C 0.125 3.875 4 C -0.261 4.261 5 C -0.263 4.263 6 C -0.145 4.145 7 S 0.515 5.485 8 C -0.498 4.498 9 C 0.365 3.635 10 O -0.477 6.477 11 N -0.357 5.357 12 C 0.168 3.832 13 H 0.014 0.986 14 C -0.190 4.190 15 C -0.587 4.587 16 H 0.091 0.909 17 C -0.186 4.186 18 N -0.556 5.556 19 Si 0.802 3.198 20 H -0.203 1.203 21 H -0.207 1.207 22 H -0.182 1.182 23 H 0.094 0.906 24 H 0.127 0.873 25 H 0.093 0.907 26 H 0.199 0.801 27 H 0.102 0.898 28 H 0.120 0.880 29 H 0.120 0.880 30 H 0.231 0.769 31 H 0.089 0.911 32 H 0.060 0.940 33 H 0.027 0.973 34 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -15.345 16.595 -0.983 22.624 hybrid contribution -0.505 -1.035 0.297 1.190 sum -15.850 15.560 -0.686 22.222 Atomic orbital electron populations 1.23485 0.75921 1.05567 1.03043 1.86318 1.23736 1.25586 1.86912 1.18694 0.90118 0.86399 0.92293 1.20064 1.03270 0.89049 1.13720 1.24560 0.97999 1.02231 1.01537 1.20664 1.02578 0.85978 1.05306 1.82827 1.04107 0.92460 1.69073 1.22838 0.95742 0.99773 1.31435 1.16205 0.82653 0.88040 0.76553 1.90762 1.80490 1.22721 1.53730 1.46177 1.05224 1.10628 1.73717 1.18364 0.86197 0.85222 0.93378 0.98588 1.21888 0.98521 1.01208 0.97412 1.21512 0.96457 0.98755 1.41958 0.90942 1.25861 1.02687 0.94737 0.95323 1.70066 1.32629 1.06118 1.46813 0.85265 0.77563 0.78918 0.78103 1.20276 1.20681 1.18178 0.90589 0.87251 0.90655 0.80145 0.89759 0.87963 0.88014 0.76894 0.91127 0.94003 0.97347 0.92449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.28 9.94 113.37 1.13 1.41 16 2 O -0.31 -11.06 9.36 -74.38 -0.70 -11.76 16 3 C 0.19 6.15 6.70 21.99 0.15 6.30 16 4 C -0.23 -4.99 9.02 21.17 0.19 -4.80 16 5 C -0.14 -2.69 6.26 24.64 0.15 -2.54 16 6 C -0.09 -0.79 10.32 71.24 0.74 -0.05 16 7 S 0.25 6.36 21.92 -56.49 -1.24 5.12 16 8 C -0.38 -14.37 6.28 22.90 0.14 -14.23 16 9 C 0.58 28.27 7.56 85.10 0.64 28.91 16 10 O -0.59 -34.57 15.50 12.16 0.19 -34.38 16 11 N -0.71 -34.41 5.06 -454.97 -2.30 -36.71 16 12 C 0.27 15.51 2.56 44.24 0.11 15.62 16 13 H 0.00 -0.25 7.58 -2.39 -0.02 -0.27 16 14 C -0.13 -7.26 9.26 71.98 0.67 -6.60 16 15 C -0.55 -30.89 8.73 25.60 0.22 -30.67 16 16 H 0.07 3.81 7.74 -2.91 -0.02 3.79 16 17 C 0.01 0.78 5.30 84.66 0.45 1.22 16 18 N -0.92 -54.75 11.32 21.45 0.24 -54.51 16 19 Si 0.98 43.26 29.54 68.60 2.03 45.28 16 20 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 21 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 22 H -0.26 -10.69 7.11 99.48 0.71 -9.99 16 23 H 0.08 1.15 7.89 -2.39 -0.02 1.13 16 24 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 25 H 0.07 1.15 7.87 -2.39 -0.02 1.14 16 26 H 0.18 2.53 6.99 -2.91 -0.02 2.51 16 27 H 0.08 0.63 8.11 -2.39 -0.02 0.61 16 28 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.40 16.61 7.51 -92.71 -0.70 15.91 16 31 H 0.07 4.16 6.07 -2.39 -0.01 4.15 16 32 H 0.04 2.11 8.14 -2.39 -0.02 2.09 16 33 H 0.01 0.42 8.14 -2.38 -0.02 0.40 16 34 H 0.27 14.91 8.31 -92.71 -0.77 14.14 16 Total: -1.00 -79.75 304.74 3.24 -76.51 By element: Atomic # 1 Polarization: 15.42 SS G_CDS: 0.42 Total: 15.85 kcal Atomic # 6 Polarization: -10.00 SS G_CDS: 4.59 Total: -5.41 kcal Atomic # 7 Polarization: -89.16 SS G_CDS: -2.06 Total: -91.22 kcal Atomic # 8 Polarization: -45.63 SS G_CDS: -0.51 Total: -46.14 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.28 kcal Atomic # 16 Polarization: 6.36 SS G_CDS: -1.24 Total: 5.12 kcal Total: -79.75 3.24 -76.51 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072785662.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.722 kcal (2) G-P(sol) polarization free energy of solvation -79.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds