Wall clock time and date at job start Mon Mar 30 2020 01:36:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46496 * 119.99653 * 2 1 4 4 C 1.52995 * 109.47070 * 85.00565 * 3 2 1 5 5 C 1.50707 * 109.47301 * 179.97438 * 4 3 2 6 6 C 1.38238 * 119.99792 * 90.00016 * 5 4 3 7 7 C 1.38235 * 119.99712 * 179.97438 * 6 5 4 8 8 C 1.38234 * 120.00220 * 359.97124 * 7 6 5 9 9 C 1.38233 * 120.00037 * 0.28719 * 8 7 6 10 10 C 1.38234 * 120.00179 * 269.97953 * 5 4 3 11 11 S 1.65597 * 120.00234 * 180.02562 * 2 1 3 12 12 O 1.42109 * 106.40093 * 23.53735 * 11 2 1 13 13 O 1.42102 * 106.40358 * 156.45655 * 11 2 1 14 14 C 1.76201 * 107.21798 * 269.99653 * 11 2 1 15 15 H 1.07994 * 119.99760 * 359.97438 * 14 11 2 16 16 C 1.37880 * 120.00009 * 179.97438 * 14 11 2 17 17 N 1.31514 * 119.99837 * 0.02562 * 16 14 11 18 18 Si 1.86799 * 119.99778 * 179.97438 * 16 14 11 19 19 H 1.48500 * 109.46865 * 60.00581 * 18 16 14 20 20 H 1.48500 * 109.46628 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.47360 * 300.00242 * 18 16 14 22 22 H 1.08993 * 109.47469 * 89.99914 * 1 2 3 23 23 H 1.09000 * 109.46819 * 209.99674 * 1 2 3 24 24 H 1.09001 * 109.47418 * 329.99495 * 1 2 3 25 25 H 1.08995 * 109.47623 * 325.00334 * 3 2 1 26 26 H 1.09004 * 109.47046 * 205.00341 * 3 2 1 27 27 H 1.09005 * 109.47610 * 60.00011 * 4 3 2 28 28 H 1.09000 * 109.47256 * 299.99352 * 4 3 2 29 29 H 1.08005 * 120.00068 * 359.97438 * 6 5 4 30 30 H 1.07999 * 119.99770 * 179.97438 * 7 6 5 31 31 H 1.08002 * 119.99744 * 180.02562 * 8 7 6 32 32 H 1.07998 * 120.00395 * 179.72811 * 9 8 7 33 33 H 1.07999 * 119.99968 * 359.97438 * 10 5 4 34 34 H 0.97003 * 119.99801 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.3436 1.7732 1.4370 5 6 3.0976 3.0781 1.4371 6 6 2.4107 4.2732 1.3327 7 6 3.1023 5.4701 1.3334 8 6 4.4806 5.4720 1.4390 9 6 5.1679 4.2767 1.5379 10 6 4.4759 3.0799 1.5420 11 16 2.2930 -1.4341 -0.0006 12 8 1.4113 -2.4063 -0.5455 13 8 3.5759 -1.1565 -0.5450 14 6 2.5539 -1.8865 1.6822 15 1 2.1875 -1.2513 2.4751 16 6 3.2258 -3.0513 1.9867 17 7 3.6724 -3.8245 1.0211 18 14 3.5030 -3.5305 3.7708 19 1 2.1921 -3.6841 4.4514 20 1 4.2449 -4.8156 3.8286 21 1 4.2928 -2.4725 4.4506 22 1 -0.3634 0.0000 -1.0276 23 1 -0.3633 -0.8900 0.5138 24 1 -0.3634 0.8899 0.5139 25 1 1.6500 2.0043 -0.5893 26 1 3.1857 1.1178 -0.4344 27 1 2.8911 1.0376 2.0264 28 1 1.3554 1.9242 1.8714 29 1 1.3338 4.2718 1.2507 30 1 2.5657 6.4038 1.2514 31 1 5.0208 6.4072 1.4399 32 1 6.2450 4.2779 1.6160 33 1 5.0125 2.1462 1.6242 34 1 4.1455 -4.6438 1.2354 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088203072.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:57 Heat of formation + Delta-G solvation = -97.407673 kcal Electronic energy + Delta-G solvation = -18530.313609 eV Core-core repulsion = 15553.161219 eV Total energy + Delta-G solvation = -2977.152390 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.087 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.15954 -37.55899 -37.36327 -36.14584 -35.18215 -33.69669 -31.69871 -29.61069 -28.26757 -26.77011 -24.05500 -23.37608 -21.81214 -20.61741 -19.16625 -18.28624 -17.58448 -17.05269 -16.89521 -16.12741 -16.01476 -15.85276 -15.16918 -14.90347 -14.40168 -14.10236 -13.97342 -13.78228 -13.71504 -13.46525 -13.15049 -13.01256 -12.89691 -12.56724 -12.49745 -12.34104 -12.19008 -11.96391 -11.77170 -11.54431 -11.24313 -10.99087 -9.98672 -9.75289 -9.42567 -8.74429 -7.48149 0.29025 0.52094 0.56836 1.32413 1.34485 1.47346 2.19360 2.57473 2.80143 2.96271 3.76155 3.91874 3.96085 4.16399 4.22684 4.27134 4.36476 4.38782 4.49906 4.63900 4.71044 4.72599 4.78040 4.91954 4.98044 5.10584 5.19416 5.25324 5.30896 5.35635 5.64291 5.68654 5.83096 5.90542 5.99078 6.20498 6.77881 8.20619 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.020628 B = 0.006135 C = 0.005312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.079953 B = 4562.683559 C = 5270.208386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -1.013 6.013 3 C 0.127 3.873 4 C -0.101 4.101 5 C -0.088 4.088 6 C -0.121 4.121 7 C -0.122 4.122 8 C -0.130 4.130 9 C -0.127 4.127 10 C -0.142 4.142 11 S 2.713 3.287 12 O -1.043 7.043 13 O -1.042 7.042 14 C -1.035 5.035 15 H 0.120 0.880 16 C 0.071 3.929 17 N -0.895 5.895 18 Si 0.987 3.013 19 H -0.249 1.249 20 H -0.264 1.264 21 H -0.251 1.251 22 H 0.056 0.944 23 H 0.058 0.942 24 H 0.103 0.897 25 H 0.104 0.896 26 H 0.063 0.937 27 H 0.057 0.943 28 H 0.096 0.904 29 H 0.142 0.858 30 H 0.149 0.851 31 H 0.145 0.855 32 H 0.134 0.866 33 H 0.107 0.893 34 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.980 17.402 4.128 18.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.851 5.851 3 C 0.002 3.998 4 C -0.140 4.140 5 C -0.089 4.089 6 C -0.138 4.138 7 C -0.139 4.139 8 C -0.148 4.148 9 C -0.145 4.145 10 C -0.160 4.160 11 S 2.815 3.185 12 O -1.033 7.033 13 O -1.032 7.032 14 C -1.169 5.169 15 H 0.138 0.862 16 C -0.142 4.142 17 N -0.527 5.527 18 Si 0.805 3.195 19 H -0.172 1.172 20 H -0.188 1.188 21 H -0.175 1.175 22 H 0.075 0.925 23 H 0.077 0.923 24 H 0.122 0.878 25 H 0.122 0.878 26 H 0.082 0.918 27 H 0.076 0.924 28 H 0.114 0.886 29 H 0.160 0.840 30 H 0.167 0.833 31 H 0.163 0.837 32 H 0.152 0.848 33 H 0.125 0.875 34 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -2.667 16.794 3.209 17.305 hybrid contribution 0.388 -0.795 1.076 1.393 sum -2.279 15.999 4.285 16.719 Atomic orbital electron populations 1.21568 0.77638 1.03860 1.02271 1.57407 1.15655 1.20970 1.91072 1.21317 0.96805 0.84873 0.96829 1.21069 1.01342 0.94078 0.97549 1.19887 0.93818 0.95118 1.00104 1.21315 1.00950 0.91464 1.00113 1.21493 0.94585 0.98585 0.99261 1.21478 0.94970 0.98362 0.99970 1.21379 1.00747 0.92386 1.00019 1.21313 0.94599 0.98798 1.01290 1.00163 0.71185 0.70593 0.76568 1.93294 1.67842 1.60437 1.81695 1.93284 1.43212 1.84953 1.81727 1.30921 1.50178 1.17413 1.18346 0.86215 1.26006 0.89478 0.93248 1.05491 1.69993 1.32289 1.13787 1.36614 0.85212 0.80136 0.78701 0.75470 1.17234 1.18788 1.17503 0.92486 0.92298 0.87811 0.87822 0.91827 0.92395 0.88573 0.84008 0.83335 0.83692 0.84840 0.87487 0.89143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.90 10.31 127.77 1.32 4.22 16 2 N -1.01 -40.86 3.18 -539.16 -1.72 -42.57 16 3 C 0.13 4.35 5.64 86.38 0.49 4.84 16 4 C -0.10 -3.11 5.67 29.85 0.17 -2.94 16 5 C -0.09 -2.44 5.13 -19.86 -0.10 -2.54 16 6 C -0.12 -2.59 9.70 22.27 0.22 -2.38 16 7 C -0.12 -2.24 10.05 22.27 0.22 -2.01 16 8 C -0.13 -2.50 10.05 22.27 0.22 -2.27 16 9 C -0.13 -2.99 10.05 22.27 0.22 -2.77 16 10 C -0.14 -4.11 9.70 22.27 0.22 -3.90 16 11 S 2.71 149.45 4.93 -56.49 -0.28 149.17 16 12 O -1.04 -63.54 17.09 -128.00 -2.19 -65.73 16 13 O -1.04 -63.56 16.57 -128.00 -2.12 -65.68 16 14 C -1.03 -57.36 9.75 67.74 0.66 -56.70 16 15 H 0.12 5.96 7.81 -2.91 -0.02 5.93 16 16 C 0.07 3.96 5.46 84.66 0.46 4.42 16 17 N -0.90 -54.20 13.19 21.45 0.28 -53.91 16 18 Si 0.99 41.62 29.54 68.60 2.03 43.64 16 19 H -0.25 -9.80 7.11 99.48 0.71 -9.10 16 20 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 21 H -0.25 -9.99 7.11 99.48 0.71 -9.29 16 22 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 23 H 0.06 2.02 7.79 -2.39 -0.02 2.00 16 24 H 0.10 2.33 8.07 -2.39 -0.02 2.31 16 25 H 0.10 2.77 8.11 -2.39 -0.02 2.75 16 26 H 0.06 2.52 6.91 -2.38 -0.02 2.51 16 27 H 0.06 2.09 8.09 -2.38 -0.02 2.07 16 28 H 0.10 2.45 8.09 -2.39 -0.02 2.43 16 29 H 0.14 2.36 8.06 -2.91 -0.02 2.33 16 30 H 0.15 1.80 8.06 -2.91 -0.02 1.78 16 31 H 0.15 1.92 8.06 -2.91 -0.02 1.90 16 32 H 0.13 2.61 8.06 -2.91 -0.02 2.59 16 33 H 0.11 3.41 8.06 -2.91 -0.02 3.39 16 34 H 0.30 16.26 8.31 -92.71 -0.77 15.49 16 Total: -1.00 -77.32 308.95 1.18 -76.14 By element: Atomic # 1 Polarization: 19.89 SS G_CDS: 1.08 Total: 20.97 kcal Atomic # 6 Polarization: -66.12 SS G_CDS: 4.10 Total: -62.02 kcal Atomic # 7 Polarization: -95.06 SS G_CDS: -1.43 Total: -96.49 kcal Atomic # 8 Polarization: -127.10 SS G_CDS: -4.31 Total: -131.41 kcal Atomic # 14 Polarization: 41.62 SS G_CDS: 2.03 Total: 43.64 kcal Atomic # 16 Polarization: 149.45 SS G_CDS: -0.28 Total: 149.17 kcal Total: -77.32 1.18 -76.14 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088203072.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.270 kcal (2) G-P(sol) polarization free energy of solvation -77.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds