Wall clock time and date at job start Mon Mar 30 2020 02:03:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86789 * 120.00192 * 2 1 4 4 H 1.48506 * 109.47135 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47491 * 300.00304 * 3 2 1 6 6 H 1.48511 * 109.47242 * 60.00282 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99349 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00472 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47460 * 180.02562 * 9 7 2 11 11 N 1.46499 * 109.47555 * 180.02562 * 10 9 7 12 12 C 1.34777 * 120.00199 * 180.02562 * 11 10 9 13 13 O 1.21283 * 119.99750 * 359.97438 * 12 11 10 14 14 C 1.50702 * 119.99928 * 180.27479 * 12 11 10 15 15 C 1.50700 * 109.46869 * 179.72354 * 14 12 11 16 16 C 1.38259 * 119.99653 * 264.72043 * 15 14 12 17 17 C 1.38215 * 120.06835 * 179.77230 * 16 15 14 18 18 C 1.38259 * 120.07013 * 0.50814 * 17 16 15 19 19 C 1.38366 * 119.99926 * 359.74565 * 18 17 16 20 20 F 1.35099 * 120.03889 * 179.97438 * 19 18 17 21 21 C 1.38364 * 120.00206 * 84.99954 * 15 14 12 22 22 F 1.35100 * 120.03457 * 359.97438 * 21 15 14 23 23 H 0.97005 * 119.99661 * 359.97438 * 1 2 3 24 24 H 1.08998 * 109.47044 * 59.99820 * 9 7 2 25 25 H 1.09005 * 109.46730 * 299.99869 * 9 7 2 26 26 H 1.08998 * 109.47382 * 59.99730 * 10 9 7 27 27 H 1.09002 * 109.47216 * 300.00167 * 10 9 7 28 28 H 0.97000 * 119.99484 * 359.97438 * 11 10 9 29 29 H 1.09004 * 109.46965 * 299.72211 * 14 12 11 30 30 H 1.08994 * 109.46990 * 59.72065 * 14 12 11 31 31 H 1.07999 * 119.96842 * 0.02562 * 16 15 14 32 32 H 1.08002 * 119.96743 * 180.25500 * 17 16 15 33 33 H 1.07996 * 119.99935 * 179.77194 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2450 -3.6622 -0.0005 11 7 1.5125 -4.9309 -0.0012 12 6 2.1863 -6.0981 -0.0007 13 8 3.3992 -6.0981 -0.0003 14 6 1.4327 -7.4032 -0.0076 15 6 2.4120 -8.5486 -0.0125 16 6 2.7783 -9.1398 -1.2075 17 6 3.6799 -10.1873 -1.2141 18 6 4.2095 -10.6531 -0.0249 19 6 3.8409 -10.0671 1.1731 20 9 4.3574 -10.5219 2.3356 21 6 2.9402 -9.0124 1.1793 22 9 2.5788 -8.4386 2.3478 23 1 -0.4850 0.8401 0.0004 24 1 0.6239 -2.5567 -0.8903 25 1 0.6246 -2.5570 0.8898 26 1 2.8717 -3.6045 0.8894 27 1 2.8717 -3.6045 -0.8905 28 1 0.5425 -4.9308 -0.0011 29 1 0.8055 -7.4652 0.8817 30 1 0.8067 -7.4565 -0.8983 31 1 2.3626 -8.7800 -2.1371 32 1 3.9680 -10.6452 -2.1489 33 1 4.9111 -11.4741 -0.0312 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000094712527.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:53 Heat of formation + Delta-G solvation = -117.940686 kcal Electronic energy + Delta-G solvation = -19406.349812 eV Core-core repulsion = 15874.466657 eV Total energy + Delta-G solvation = -3531.883155 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.097 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.55582 -48.63416 -39.80695 -38.58215 -34.91830 -33.10410 -32.79171 -30.49028 -29.89517 -27.81931 -24.71564 -23.01860 -22.56851 -20.99772 -20.13903 -18.03426 -17.46239 -17.06942 -17.01332 -16.40595 -16.12195 -15.22764 -15.14375 -15.01029 -14.98431 -14.48780 -14.45355 -13.68230 -13.47017 -13.28297 -12.99669 -12.34460 -12.31576 -12.18017 -11.83573 -11.43782 -11.21899 -11.05952 -10.64059 -10.36155 -9.87449 -9.56597 -9.28728 -9.01219 -8.89358 -8.57928 -8.38469 -6.11296 -4.14032 0.75457 0.76964 2.92624 3.08815 3.27394 3.35043 3.40125 3.60951 3.73364 4.17827 4.25818 4.40949 4.47197 4.71830 4.84706 5.08629 5.14955 5.25798 5.25989 5.55466 5.61341 5.74886 5.87829 6.02765 6.30700 6.32339 6.55343 6.71163 6.86827 7.49264 7.59149 7.86870 7.95296 8.25480 8.58780 8.92165 9.51017 11.00346 Molecular weight = 269.10amu Principal moments of inertia in cm(-1) A = 0.039590 B = 0.003224 C = 0.003174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.080519 B = 8681.664817 C = 8819.051283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.897 3.103 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.521 4.521 8 H 0.060 0.940 9 C 0.012 3.988 10 C 0.122 3.878 11 N -0.721 5.721 12 C 0.507 3.493 13 O -0.543 6.543 14 C -0.108 4.108 15 C -0.066 4.066 16 C -0.089 4.089 17 C -0.100 4.100 18 C -0.130 4.130 19 C 0.066 3.934 20 F -0.131 7.131 21 C 0.083 3.917 22 F -0.125 7.125 23 H 0.262 0.738 24 H 0.023 0.977 25 H 0.023 0.977 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.399 0.601 29 H 0.107 0.893 30 H 0.112 0.888 31 H 0.140 0.860 32 H 0.140 0.860 33 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.038 -22.069 -2.363 22.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.724 3.276 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.560 4.560 8 H 0.078 0.922 9 C -0.025 4.025 10 C -0.001 4.001 11 N -0.371 5.371 12 C 0.292 3.708 13 O -0.421 6.421 14 C -0.148 4.148 15 C -0.067 4.067 16 C -0.108 4.108 17 C -0.118 4.118 18 C -0.149 4.149 19 C 0.046 3.954 20 F -0.109 7.109 21 C 0.062 3.938 22 F -0.103 7.103 23 H 0.071 0.929 24 H 0.041 0.959 25 H 0.041 0.959 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.232 0.768 29 H 0.125 0.875 30 H 0.130 0.870 31 H 0.158 0.842 32 H 0.158 0.842 33 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 2.776 -21.909 -2.262 22.200 hybrid contribution -0.047 1.033 0.504 1.151 sum 2.730 -20.876 -1.758 21.127 Atomic orbital electron populations 1.69965 1.06090 1.26785 1.50458 1.24999 0.94905 0.99444 0.94971 0.86455 0.80179 0.83297 0.77629 1.19573 1.20915 1.20917 1.21091 0.93295 0.90378 1.51244 0.92201 1.19331 0.94201 0.91124 0.97871 1.21739 0.96069 0.81416 1.00834 1.46304 1.10565 1.06450 1.73740 1.20258 0.88242 0.85145 0.77136 1.90706 1.13840 1.87665 1.49896 1.20685 0.97408 0.90563 1.06138 1.19307 0.98843 0.97000 0.91568 1.21013 0.97204 0.95445 0.97092 1.21026 0.96400 0.96605 0.97805 1.21059 1.01822 1.01523 0.90475 1.17640 0.98124 0.96756 0.82925 1.91522 1.85215 1.87927 1.46264 1.17488 0.99014 0.94811 0.82453 1.91529 1.90103 1.83371 1.45323 0.92887 0.95894 0.95908 0.92552 0.92517 0.76783 0.87462 0.86976 0.84224 0.84189 0.83840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.00 13.29 55.43 0.74 -25.26 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.90 21.35 29.54 -169.99 -5.02 16.33 16 4 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 7 C -0.52 -14.44 9.11 -34.44 -0.31 -14.76 16 8 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 9 C 0.01 0.30 5.09 -27.89 -0.14 0.16 16 10 C 0.12 2.57 5.61 -4.04 -0.02 2.55 16 11 N -0.72 -12.19 5.56 -60.29 -0.33 -12.52 16 12 C 0.51 8.32 7.82 -10.98 -0.09 8.24 16 13 O -0.54 -11.15 16.03 5.55 0.09 -11.06 16 14 C -0.11 -1.22 5.60 -29.03 -0.16 -1.39 16 15 C -0.07 -0.79 4.38 -104.57 -0.46 -1.25 16 16 C -0.09 -0.85 9.68 -39.58 -0.38 -1.23 16 17 C -0.10 -0.82 10.04 -39.58 -0.40 -1.21 16 18 C -0.13 -1.20 10.02 -39.53 -0.40 -1.60 16 19 C 0.07 0.81 7.31 -39.37 -0.29 0.52 16 20 F -0.13 -1.72 17.18 2.25 0.04 -1.68 16 21 C 0.08 1.12 7.25 -39.37 -0.29 0.84 16 22 F -0.12 -1.91 16.48 2.25 0.04 -1.87 16 23 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 24 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 27 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 28 H 0.40 5.65 8.47 -40.82 -0.35 5.30 16 29 H 0.11 1.08 7.79 -51.93 -0.40 0.67 16 30 H 0.11 0.89 8.05 -51.93 -0.42 0.47 16 31 H 0.14 1.00 8.06 -52.49 -0.42 0.58 16 32 H 0.14 0.70 8.06 -52.49 -0.42 0.28 16 33 H 0.14 0.94 8.06 -52.49 -0.42 0.52 16 LS Contribution 303.88 15.07 4.58 4.58 Total: -1.00 -33.14 303.88 -6.58 -39.72 By element: Atomic # 1 Polarization: 3.03 SS G_CDS: -3.67 Total: -0.64 kcal Atomic # 6 Polarization: -4.55 SS G_CDS: -3.03 Total: -7.59 kcal Atomic # 7 Polarization: -38.19 SS G_CDS: 0.40 Total: -37.79 kcal Atomic # 8 Polarization: -11.15 SS G_CDS: 0.09 Total: -11.06 kcal Atomic # 9 Polarization: -3.63 SS G_CDS: 0.08 Total: -3.55 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -33.14 -6.58 -39.72 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094712527.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.224 kcal (2) G-P(sol) polarization free energy of solvation -33.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds