Wall clock time and date at job start Mon Mar 30 2020 01:09:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.46979 * 2 1 4 4 N 1.46507 * 109.47255 * 180.02562 * 3 2 1 5 5 C 1.36889 * 119.99760 * 270.53506 * 4 3 2 6 6 H 1.07997 * 119.99964 * 134.39373 * 5 4 3 7 7 C 1.38956 * 120.00243 * 314.39315 * 5 4 3 8 8 N 1.31435 * 119.99755 * 350.62251 * 7 5 4 9 9 Si 1.86797 * 120.00110 * 170.61830 * 7 5 4 10 10 H 1.48501 * 109.47223 * 60.68879 * 9 7 5 11 11 H 1.48501 * 109.47188 * 180.69330 * 9 7 5 12 12 H 1.48503 * 109.47048 * 300.68990 * 9 7 5 13 13 C 1.34774 * 120.00238 * 90.53305 * 4 3 2 14 14 O 1.21861 * 119.99903 * 355.16779 * 13 4 3 15 15 C 1.41468 * 119.99934 * 175.17159 * 13 4 3 16 16 C 1.38173 * 126.01432 * 174.35064 * 15 13 4 17 17 C 1.39583 * 106.74193 * 179.97438 * 16 15 13 18 18 C 1.36613 * 107.20180 * 0.02562 * 17 16 15 19 19 S 1.76192 * 125.61164 * 179.97438 * 18 17 16 20 20 C 1.81001 * 100.00192 * 186.03418 * 19 18 17 21 21 O 1.34182 * 108.78057 * 0.02562 * 18 17 16 22 22 H 1.09004 * 109.46905 * 60.00047 * 1 2 3 23 23 H 1.09001 * 109.46991 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47239 * 300.00018 * 1 2 3 25 25 H 1.09008 * 109.47002 * 240.00432 * 2 1 3 26 26 H 1.09000 * 109.47356 * 120.00123 * 2 1 3 27 27 H 1.09000 * 109.47212 * 60.00458 * 3 2 1 28 28 H 1.09004 * 109.47264 * 299.99733 * 3 2 1 29 29 H 0.97001 * 120.00331 * 180.02562 * 8 7 5 30 30 H 1.07996 * 126.62716 * 359.96813 * 16 15 13 31 31 H 1.07996 * 126.39595 * 179.73996 * 17 16 15 32 32 H 1.08994 * 109.46915 * 64.89538 * 20 19 18 33 33 H 1.09004 * 109.47005 * 184.89671 * 20 19 18 34 34 H 1.09000 * 109.46505 * 304.89699 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.1899 1.4313 1.1846 6 1 5.0267 0.7618 1.3184 7 6 3.8086 2.2815 2.2155 8 7 2.9163 3.2212 1.9962 9 14 4.5642 2.0886 3.9129 10 1 6.0333 2.2870 3.8263 11 1 3.9815 3.0992 4.8318 12 1 4.2783 0.7262 4.4301 13 6 4.1785 1.4536 -1.1680 14 8 3.5720 1.3747 -2.2220 15 6 5.5894 1.5568 -1.1697 16 6 6.4090 1.4701 -2.2787 17 6 7.7192 1.6270 -1.8237 18 6 7.6586 1.8015 -0.4701 19 16 9.0403 2.0438 0.5960 20 6 8.2080 2.0056 2.2029 21 8 6.3737 1.7568 -0.0859 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8933 -0.5138 -0.8901 26 1 1.8934 -0.5138 0.8900 27 1 1.6767 1.9563 0.8900 28 1 1.6767 1.9563 -0.8900 29 1 2.6503 3.8149 2.7157 30 1 6.0963 1.3115 -3.3002 31 1 8.6140 1.6088 -2.4281 32 1 7.7859 1.0147 2.3699 33 1 8.9274 2.2315 2.9901 34 1 7.4097 2.7477 2.2162 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000112276827.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:10 Heat of formation + Delta-G solvation = -36.867670 kcal Electronic energy + Delta-G solvation = -19064.556316 eV Core-core repulsion = 16090.029138 eV Total energy + Delta-G solvation = -2974.527178 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.087 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.38359 -40.38737 -37.19327 -34.64227 -34.00134 -33.25549 -30.95909 -29.88015 -27.73152 -26.72976 -24.08090 -22.75987 -22.19904 -21.17277 -19.98427 -18.52767 -17.92692 -17.25552 -16.71089 -16.50059 -15.90022 -15.58182 -15.44610 -14.94107 -14.57383 -14.47520 -14.07921 -13.97180 -13.88619 -13.34373 -13.30030 -13.03223 -12.92979 -12.63225 -12.46678 -12.21349 -12.03223 -11.82477 -11.54389 -11.14285 -11.06592 -10.74932 -10.43195 -9.50667 -8.40122 -8.28910 -6.23814 0.03626 0.24280 0.92174 1.31496 1.41817 1.46244 1.52323 2.23112 2.44261 2.47862 2.93486 3.12824 3.99247 4.11990 4.18730 4.21557 4.23752 4.30662 4.52662 4.57228 4.70220 4.78902 4.85966 4.93244 4.97608 5.06892 5.19397 5.32492 5.37844 5.42278 5.52915 5.87471 5.95427 6.34148 6.99892 7.37421 7.82241 8.64979 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.016586 B = 0.008917 C = 0.006167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1687.764494 B = 3139.272455 C = 4538.972466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.124 4.124 3 C 0.114 3.886 4 N -0.431 5.431 5 C -0.340 4.340 6 H 0.088 0.912 7 C 0.011 3.989 8 N -0.891 5.891 9 Si 0.971 3.029 10 H -0.236 1.236 11 H -0.283 1.283 12 H -0.266 1.266 13 C 0.520 3.480 14 O -0.622 6.622 15 C -0.064 4.064 16 C -0.136 4.136 17 C -0.185 4.185 18 C -0.052 4.052 19 S 0.009 5.991 20 C -0.159 4.159 21 O -0.129 6.129 22 H 0.053 0.947 23 H 0.073 0.927 24 H 0.057 0.943 25 H 0.040 0.960 26 H 0.055 0.945 27 H 0.095 0.905 28 H 0.037 0.963 29 H 0.275 0.725 30 H 0.165 0.835 31 H 0.187 0.813 32 H 0.086 0.914 33 H 0.139 0.861 34 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.467 -2.948 2.678 9.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.162 4.162 3 C -0.009 4.009 4 N -0.146 5.146 5 C -0.468 4.468 6 H 0.106 0.894 7 C -0.193 4.193 8 N -0.527 5.527 9 Si 0.793 3.207 10 H -0.159 1.159 11 H -0.208 1.208 12 H -0.191 1.191 13 C 0.312 3.688 14 O -0.513 6.513 15 C -0.121 4.121 16 C -0.158 4.158 17 C -0.211 4.211 18 C -0.216 4.216 19 S 0.245 5.755 20 C -0.327 4.327 21 O -0.024 6.024 22 H 0.072 0.928 23 H 0.092 0.908 24 H 0.076 0.924 25 H 0.059 0.941 26 H 0.074 0.926 27 H 0.113 0.887 28 H 0.056 0.944 29 H 0.085 0.915 30 H 0.183 0.817 31 H 0.204 0.796 32 H 0.105 0.895 33 H 0.157 0.843 34 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 9.110 -2.627 2.505 9.806 hybrid contribution -1.378 0.035 0.702 1.547 sum 7.731 -2.592 3.207 8.762 Atomic orbital electron populations 1.21605 0.93260 1.02476 1.01886 1.21720 0.97526 0.96478 1.00514 1.21532 0.80648 0.96759 1.01944 1.43693 1.05870 1.60364 1.04697 1.19557 1.15303 1.21529 0.90371 0.89402 1.26391 0.96350 0.92684 1.03896 1.69930 1.31354 1.16709 1.34732 0.85363 0.80716 0.78356 0.76296 1.15897 1.20849 1.19133 1.16370 0.85144 0.82578 0.84715 1.90682 1.68814 1.59642 1.32189 1.21425 0.91893 1.12823 0.85932 1.22245 0.92031 1.02456 0.99084 1.21671 0.98468 1.08734 0.92242 1.25558 0.87863 1.08872 0.99292 1.85223 1.01625 1.90882 0.97728 1.23822 1.05180 1.06741 0.96981 1.84827 1.14733 1.68708 1.34119 0.92777 0.90807 0.92380 0.94141 0.92582 0.88736 0.94435 0.91519 0.81729 0.79552 0.89519 0.84256 0.90486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.39 9.91 71.98 0.71 -3.68 16 2 C -0.12 -5.18 6.26 30.59 0.19 -4.99 16 3 C 0.11 5.68 4.96 86.38 0.43 6.11 16 4 N -0.43 -23.00 2.47 -645.67 -1.59 -24.59 16 5 C -0.34 -17.51 7.40 84.08 0.62 -16.89 16 6 H 0.09 4.47 6.68 -2.91 -0.02 4.45 16 7 C 0.01 0.53 5.18 84.92 0.44 0.97 16 8 N -0.89 -46.96 11.33 21.67 0.25 -46.72 16 9 Si 0.97 37.21 29.56 68.60 2.03 39.24 16 10 H -0.24 -7.92 5.84 99.48 0.58 -7.34 16 11 H -0.28 -10.85 7.11 99.48 0.71 -10.15 16 12 H -0.27 -10.01 7.11 99.48 0.71 -9.30 16 13 C 0.52 28.08 7.42 85.04 0.63 28.71 16 14 O -0.62 -35.47 16.41 -4.86 -0.08 -35.55 16 15 C -0.06 -3.07 6.65 23.05 0.15 -2.91 16 16 C -0.14 -5.41 10.58 22.58 0.24 -5.17 16 17 C -0.18 -6.18 10.82 22.21 0.24 -5.94 16 18 C -0.05 -1.88 7.28 67.44 0.49 -1.39 16 19 S 0.01 0.24 22.90 -56.49 -1.29 -1.06 16 20 C -0.16 -4.14 9.58 113.37 1.09 -3.06 16 21 O -0.13 -5.75 7.18 -11.19 -0.08 -5.83 16 22 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 23 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 24 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 25 H 0.04 1.77 8.14 -2.38 -0.02 1.75 16 26 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 27 H 0.09 4.91 5.66 -2.39 -0.01 4.89 16 28 H 0.04 1.95 7.47 -2.39 -0.02 1.93 16 29 H 0.28 13.61 8.31 -92.71 -0.77 12.84 16 30 H 0.17 6.04 8.06 -2.91 -0.02 6.01 16 31 H 0.19 4.65 8.06 -2.91 -0.02 4.63 16 32 H 0.09 2.33 8.14 -2.40 -0.02 2.31 16 33 H 0.14 2.56 8.14 -2.39 -0.02 2.54 16 34 H 0.08 2.40 7.43 -2.40 -0.02 2.38 16 Total: -1.00 -63.40 304.62 5.44 -57.97 By element: Atomic # 1 Polarization: 23.80 SS G_CDS: 0.97 Total: 24.77 kcal Atomic # 6 Polarization: -13.46 SS G_CDS: 5.24 Total: -8.22 kcal Atomic # 7 Polarization: -69.96 SS G_CDS: -1.35 Total: -71.31 kcal Atomic # 8 Polarization: -41.23 SS G_CDS: -0.16 Total: -41.39 kcal Atomic # 14 Polarization: 37.21 SS G_CDS: 2.03 Total: 39.24 kcal Atomic # 16 Polarization: 0.24 SS G_CDS: -1.29 Total: -1.06 kcal Total: -63.40 5.44 -57.97 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112276827.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.101 kcal (2) G-P(sol) polarization free energy of solvation -63.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds