Wall clock time and date at job start Mon Mar 30 2020 00:40:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35790 * 116.99962 * 2 1 4 4 C 1.38023 * 123.47129 * 0.02562 * 3 2 1 5 5 C 1.33605 * 115.08445 * 179.72872 * 4 3 2 6 6 C 1.50701 * 124.42575 * 180.24969 * 5 4 3 7 7 S 1.70568 * 111.14964 * 0.25178 * 5 4 3 8 8 C 1.37264 * 123.47153 * 180.22145 * 3 2 1 9 9 C 1.41728 * 125.47690 * 359.97438 * 8 3 2 10 10 O 1.21776 * 120.00108 * 340.70316 * 9 8 3 11 11 N 1.34773 * 119.99696 * 160.69546 * 9 8 3 12 12 C 1.46495 * 120.00333 * 3.41791 * 11 9 8 13 13 C 1.46505 * 119.99674 * 183.41341 * 11 9 8 14 14 C 1.50707 * 109.46815 * 90.00091 * 13 11 9 15 15 H 1.07995 * 119.99840 * 0.02562 * 14 13 11 16 16 C 1.37877 * 119.99932 * 179.97438 * 14 13 11 17 17 N 1.31523 * 119.99946 * 0.02562 * 16 14 13 18 18 Si 1.86793 * 120.00227 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47081 * 90.00197 * 18 16 14 20 20 H 1.48500 * 109.47416 * 210.00599 * 18 16 14 21 21 H 1.48508 * 109.47024 * 330.00547 * 18 16 14 22 22 H 1.08995 * 109.47563 * 300.00395 * 1 2 3 23 23 H 1.09011 * 109.47364 * 60.00248 * 1 2 3 24 24 H 1.09002 * 109.47133 * 179.97438 * 1 2 3 25 25 H 1.08004 * 122.45261 * 0.02562 * 4 3 2 26 26 H 1.09002 * 109.47519 * 90.00240 * 6 5 4 27 27 H 1.09004 * 109.47052 * 210.00309 * 6 5 4 28 28 H 1.08998 * 109.47145 * 330.00327 * 6 5 4 29 29 H 1.08992 * 109.47286 * 85.81961 * 12 11 9 30 30 H 1.09003 * 109.46940 * 205.82173 * 12 11 9 31 31 H 1.08993 * 109.47135 * 325.81847 * 12 11 9 32 32 H 1.08998 * 109.47331 * 210.00088 * 13 11 9 33 33 H 1.09000 * 109.47118 * 330.00578 * 13 11 9 34 34 H 0.96999 * 119.99880 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2099 0.0000 4 6 1.3652 2.4109 0.0005 5 6 2.1388 3.5001 0.0062 6 6 1.6188 4.9145 0.0132 7 16 3.7921 3.0806 0.0043 8 6 3.4093 1.3646 -0.0044 9 6 4.3567 0.3105 -0.0090 10 8 4.0246 -0.8081 0.3391 11 7 5.6251 0.5463 -0.3989 12 6 6.0439 1.9064 -0.7462 13 6 6.5851 -0.5578 -0.4753 14 6 6.5416 -1.1668 -1.8531 15 1 5.8668 -0.7707 -2.5975 16 6 7.3642 -2.2289 -2.1637 17 7 8.1864 -2.7108 -1.2573 18 14 7.3108 -2.9833 -3.8716 19 1 8.2884 -2.2910 -4.7493 20 1 7.6560 -4.4251 -3.7870 21 1 5.9456 -2.8335 -4.4366 22 1 -0.3634 0.5139 0.8899 23 1 -0.3634 0.5138 -0.8901 24 1 -0.3633 -1.0277 -0.0005 25 1 0.2865 2.4659 0.0014 26 1 1.4932 5.2504 1.0426 27 1 2.3288 5.5652 -0.4973 28 1 0.6581 4.9510 -0.5005 29 1 6.3475 2.4350 0.1574 30 1 6.8830 1.8621 -1.4405 31 1 5.2129 2.4342 -1.2139 32 1 7.5884 -0.1814 -0.2759 33 1 6.3274 -1.3152 0.2650 34 1 8.7647 -3.4582 -1.4756 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113874104.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:40:07 Heat of formation + Delta-G solvation = -30.608624 kcal Electronic energy + Delta-G solvation = -18472.017921 eV Core-core repulsion = 15497.762155 eV Total energy + Delta-G solvation = -2974.255766 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.087 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.93389 -38.47304 -36.20387 -34.67238 -32.65245 -31.67453 -28.45718 -27.70574 -26.67136 -25.51779 -23.24513 -22.65706 -20.22482 -18.65487 -17.54198 -16.52398 -16.45943 -15.97816 -15.68538 -14.93398 -14.49394 -14.31731 -13.97229 -13.83175 -13.74022 -12.90302 -12.59562 -12.54256 -12.42132 -12.12517 -12.01013 -11.85579 -11.35714 -11.16776 -10.87466 -10.76125 -10.58134 -10.28500 -10.05706 -9.57233 -8.91508 -8.44748 -8.36556 -7.90202 -7.44312 -5.97675 -4.02062 0.74874 1.62608 1.98740 2.56246 3.34613 3.41078 3.46477 3.63552 3.96071 4.21766 4.51060 4.59017 5.05374 5.09702 5.15832 5.18897 5.29034 5.35399 5.41571 5.52095 5.52794 5.71216 5.83817 5.84660 5.93338 6.18856 6.30754 7.14078 7.46065 7.54447 7.62786 7.99528 8.30868 8.48250 8.98164 9.20597 9.62732 11.10302 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.024153 B = 0.005609 C = 0.005020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.981306 B = 4991.125781 C = 5576.040569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.272 6.272 3 C 0.174 3.826 4 C -0.215 4.215 5 C -0.209 4.209 6 C -0.083 4.083 7 S 0.247 5.753 8 C -0.306 4.306 9 C 0.581 3.419 10 O -0.523 6.523 11 N -0.602 5.602 12 C 0.068 3.932 13 C 0.247 3.753 14 C -0.525 4.525 15 H 0.057 0.943 16 C 0.061 3.939 17 N -0.895 5.895 18 Si 0.898 3.102 19 H -0.280 1.280 20 H -0.285 1.285 21 H -0.274 1.274 22 H 0.052 0.948 23 H 0.052 0.948 24 H 0.100 0.900 25 H 0.140 0.860 26 H 0.076 0.924 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.051 0.949 30 H 0.089 0.911 31 H 0.065 0.935 32 H 0.033 0.967 33 H 0.047 0.953 34 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.935 16.324 2.441 20.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.184 6.184 3 C 0.115 3.885 4 C -0.248 4.248 5 C -0.328 4.328 6 C -0.141 4.141 7 S 0.514 5.486 8 C -0.426 4.426 9 C 0.368 3.632 10 O -0.401 6.401 11 N -0.335 5.335 12 C -0.078 4.078 13 C 0.128 3.872 14 C -0.564 4.564 15 H 0.075 0.925 16 C -0.141 4.141 17 N -0.535 5.535 18 Si 0.726 3.274 19 H -0.207 1.207 20 H -0.211 1.211 21 H -0.199 1.199 22 H 0.070 0.930 23 H 0.070 0.930 24 H 0.119 0.881 25 H 0.158 0.842 26 H 0.095 0.905 27 H 0.090 0.910 28 H 0.092 0.908 29 H 0.069 0.931 30 H 0.108 0.892 31 H 0.083 0.917 32 H 0.051 0.949 33 H 0.065 0.935 34 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -11.557 16.197 2.672 20.076 hybrid contribution -1.678 -1.067 -1.046 2.247 sum -13.235 15.130 1.626 20.167 Atomic orbital electron populations 1.23101 0.79051 1.04043 1.00789 1.86360 1.20279 1.24293 1.87454 1.18152 0.90352 0.85169 0.94835 1.19842 1.01280 0.90822 1.12864 1.24477 1.02546 0.99996 1.05764 1.20362 1.01414 0.89525 1.02803 1.83505 1.00230 0.96249 1.68641 1.23035 0.95748 0.97843 1.26023 1.15559 0.81595 0.86930 0.79068 1.90831 1.78167 1.22944 1.48201 1.48032 1.10972 1.09204 1.65245 1.21867 1.01040 0.84272 1.00612 1.19299 0.86099 0.83852 0.97938 1.21463 1.21597 1.15845 0.97457 0.92452 1.24929 0.95290 0.96417 0.97458 1.69940 1.24120 1.25779 1.33628 0.86498 0.78304 0.78440 0.84199 1.20663 1.21093 1.19909 0.92960 0.92984 0.88131 0.84248 0.90537 0.91025 0.90849 0.93103 0.89202 0.91721 0.94878 0.93535 0.92769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 9.94 101.05 1.00 1.31 16 2 O -0.27 -5.04 9.54 -34.36 -0.33 -5.37 16 3 C 0.17 3.07 6.68 -40.01 -0.27 2.80 16 4 C -0.22 -2.86 9.02 -41.28 -0.37 -3.23 16 5 C -0.21 -2.47 6.26 -35.93 -0.23 -2.69 16 6 C -0.08 -0.64 10.31 36.01 0.37 -0.27 16 7 S 0.25 3.31 17.98 -107.50 -1.93 1.38 16 8 C -0.31 -5.89 5.93 -38.60 -0.23 -6.12 16 9 C 0.58 13.95 7.43 -14.93 -0.11 13.84 16 10 O -0.52 -14.84 15.60 -10.16 -0.16 -15.00 16 11 N -0.60 -13.97 2.86 -186.36 -0.53 -14.51 16 12 C 0.07 1.18 8.93 59.84 0.53 1.71 16 13 C 0.25 6.79 5.17 -5.19 -0.03 6.77 16 14 C -0.52 -15.48 9.39 -34.44 -0.32 -15.80 16 15 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 16 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 17 N -0.90 -27.24 13.29 55.43 0.74 -26.50 16 18 Si 0.90 22.45 29.54 -169.99 -5.02 17.43 16 19 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 20 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 21 H -0.27 -6.88 7.11 56.52 0.40 -6.48 16 22 H 0.05 0.51 7.88 -51.93 -0.41 0.10 16 23 H 0.05 0.52 7.88 -51.92 -0.41 0.11 16 24 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 25 H 0.14 1.46 6.99 -52.48 -0.37 1.09 16 26 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.05 0.74 7.80 -51.93 -0.41 0.34 16 30 H 0.09 1.52 8.04 -51.93 -0.42 1.10 16 31 H 0.07 1.00 4.61 -23.78 -0.11 0.89 16 32 H 0.03 0.90 8.07 -51.93 -0.42 0.48 16 33 H 0.05 1.44 7.37 -51.93 -0.38 1.05 16 34 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 301.99 15.07 4.55 4.55 Total: -1.00 -36.46 301.99 -6.58 -43.04 By element: Atomic # 1 Polarization: -0.88 SS G_CDS: -4.16 Total: -5.04 kcal Atomic # 6 Polarization: -0.24 SS G_CDS: 0.26 Total: 0.01 kcal Atomic # 7 Polarization: -41.21 SS G_CDS: 0.20 Total: -41.01 kcal Atomic # 8 Polarization: -19.88 SS G_CDS: -0.49 Total: -20.37 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.43 kcal Atomic # 16 Polarization: 3.31 SS G_CDS: -1.93 Total: 1.38 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -36.46 -6.58 -43.04 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113874104.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.432 kcal (2) G-P(sol) polarization free energy of solvation -36.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds