Wall clock time and date at job start Mon Mar 30 2020 01:43:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34222 * 117.00498 * 2 1 4 4 O 1.20831 * 120.00029 * 0.02562 * 3 2 1 5 5 C 1.50696 * 120.00350 * 180.02562 * 3 2 1 6 6 N 1.46507 * 109.47382 * 180.02562 * 5 3 2 7 7 C 1.39929 * 119.99810 * 180.02562 * 6 5 3 8 8 C 1.38713 * 120.08073 * 0.02562 * 7 6 5 9 9 C 1.38220 * 120.01474 * 179.97438 * 8 7 6 10 10 C 1.38522 * 120.17631 * 0.02562 * 9 8 7 11 11 F 1.35098 * 119.92146 * 179.97438 * 10 9 8 12 12 C 1.38364 * 120.15993 * 0.02562 * 10 9 8 13 13 C 1.38720 * 119.97944 * 359.97163 * 12 10 9 14 14 O 1.35794 * 120.08317 * 180.30047 * 13 12 10 15 15 C 1.34801 * 117.00313 * 354.40795 * 14 13 12 16 16 H 1.07999 * 119.99778 * 5.07674 * 15 14 13 17 17 C 1.38629 * 119.99953 * 185.06987 * 15 14 13 18 18 N 1.31578 * 120.00102 * 180.02562 * 17 15 14 19 19 Si 1.86799 * 119.99956 * 0.02562 * 17 15 14 20 20 H 1.48502 * 109.47070 * 90.00137 * 19 17 15 21 21 H 1.48510 * 109.46991 * 209.99529 * 19 17 15 22 22 H 1.48496 * 109.47420 * 329.99579 * 19 17 15 23 23 H 1.08997 * 109.47331 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.46840 * 299.99766 * 1 2 3 25 25 H 1.08996 * 109.46887 * 59.99574 * 1 2 3 26 26 H 1.09010 * 109.47278 * 60.00324 * 5 3 2 27 27 H 1.08995 * 109.47361 * 300.00528 * 5 3 2 28 28 H 0.96996 * 119.99569 * 359.97438 * 6 5 3 29 29 H 1.07995 * 119.99180 * 359.97438 * 8 7 6 30 30 H 1.08000 * 119.90951 * 180.02562 * 9 8 7 31 31 H 1.07997 * 120.00817 * 180.02562 * 12 10 9 32 32 H 0.96994 * 120.00549 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4035 2.2093 0.0005 5 6 3.5664 1.2747 -0.0006 6 7 3.9819 2.6796 0.0002 7 6 5.3424 3.0068 -0.0007 8 6 6.2990 2.0024 -0.0029 9 6 7.6425 2.3271 -0.0043 10 6 8.0380 3.6547 -0.0031 11 9 9.3525 3.9663 -0.0040 12 6 7.0899 4.6624 0.0001 13 6 5.7398 4.3440 0.0015 14 8 4.8075 5.3313 -0.0015 15 6 5.2564 6.5973 0.1112 16 1 6.3181 6.7953 0.1160 17 6 4.3554 7.6451 0.2209 18 7 4.7936 8.8810 0.3304 19 14 2.5191 7.3025 0.2130 20 1 2.0508 7.0817 1.6049 21 1 1.8014 8.4635 -0.3723 22 1 2.2451 6.0902 -0.5997 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 3.9558 0.7808 -0.8909 27 1 3.9565 0.7804 0.8890 28 1 3.3138 3.3829 0.0005 29 1 5.9940 0.9664 -0.0034 30 1 8.3859 1.5437 -0.0064 31 1 7.4009 5.6966 0.0007 32 1 4.1632 9.6141 0.4075 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000150760067.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:25 Heat of formation + Delta-G solvation = -141.632388 kcal Electronic energy + Delta-G solvation = -20005.274645 eV Core-core repulsion = 16459.991352 eV Total energy + Delta-G solvation = -3545.283294 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.090 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.65702 -41.68235 -40.94772 -38.52259 -37.71570 -35.99667 -34.46197 -31.13421 -31.09146 -28.93424 -27.31738 -26.94931 -23.66037 -22.89455 -21.89498 -20.05698 -19.69781 -18.81245 -18.21542 -17.74016 -17.35075 -17.08106 -16.80467 -16.51175 -15.83749 -15.70830 -15.53754 -15.17536 -15.12181 -14.88490 -14.31170 -14.04461 -14.00652 -13.59297 -13.28953 -13.03200 -12.98276 -12.51087 -12.19161 -12.16674 -11.87682 -11.72854 -11.56721 -10.93610 -10.87685 -9.51050 -8.52005 -8.18072 -6.20781 0.43678 0.55121 1.02658 1.27921 1.31181 1.45185 1.48649 2.23762 2.52737 2.70287 2.95097 3.06305 3.58305 3.67781 3.97367 4.25062 4.28363 4.29071 4.33290 4.38675 4.44503 4.60465 4.70124 4.99706 5.18273 5.24448 5.33105 5.41535 5.57417 5.85560 6.00122 6.36829 6.52349 6.67048 6.82489 7.54970 8.59968 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.012032 B = 0.007573 C = 0.004665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2326.608357 B = 3696.647700 C = 6001.014851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.350 6.350 3 C 0.458 3.542 4 O -0.542 6.542 5 C 0.136 3.864 6 N -0.752 5.752 7 C 0.159 3.841 8 C -0.123 4.123 9 C -0.152 4.152 10 C 0.066 3.934 11 F -0.156 7.156 12 C -0.238 4.238 13 C 0.086 3.914 14 O -0.237 6.237 15 C -0.392 4.392 16 H 0.079 0.921 17 C 0.014 3.986 18 N -0.922 5.922 19 Si 0.966 3.034 20 H -0.269 1.269 21 H -0.269 1.269 22 H -0.263 1.263 23 H 0.139 0.861 24 H 0.059 0.941 25 H 0.059 0.941 26 H 0.136 0.864 27 H 0.135 0.865 28 H 0.400 0.600 29 H 0.183 0.817 30 H 0.166 0.834 31 H 0.113 0.887 32 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.809 -22.334 -0.634 22.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.266 6.266 3 C 0.303 3.697 4 O -0.432 6.432 5 C 0.013 3.987 6 N -0.389 5.389 7 C 0.058 3.942 8 C -0.146 4.146 9 C -0.172 4.172 10 C 0.045 3.955 11 F -0.135 7.135 12 C -0.259 4.259 13 C 0.034 3.966 14 O -0.145 6.145 15 C -0.468 4.468 16 H 0.096 0.904 17 C -0.185 4.185 18 N -0.563 5.563 19 Si 0.789 3.211 20 H -0.195 1.195 21 H -0.193 1.193 22 H -0.188 1.188 23 H 0.157 0.843 24 H 0.077 0.923 25 H 0.077 0.923 26 H 0.153 0.847 27 H 0.153 0.847 28 H 0.236 0.764 29 H 0.200 0.800 30 H 0.184 0.816 31 H 0.130 0.870 32 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -5.325 -22.044 -0.636 22.687 hybrid contribution -0.622 1.610 0.049 1.727 sum -5.947 -20.434 -0.587 21.290 Atomic orbital electron populations 1.23590 0.74531 1.06006 1.02382 1.86461 1.25044 1.31484 1.83576 1.24046 0.92807 0.81532 0.71364 1.90727 1.67767 1.37903 1.46756 1.20927 0.85719 0.84309 1.07792 1.44262 1.03564 1.06555 1.84493 1.17228 0.85133 0.89093 1.02794 1.20595 0.89871 0.98802 1.05296 1.20933 0.97416 0.93213 1.05617 1.17447 0.76526 0.94101 1.07436 1.91394 1.33256 1.94221 1.94630 1.20902 0.92620 0.99820 1.12550 1.18806 0.88032 0.88191 1.01523 1.83464 1.32939 1.14383 1.83734 1.20622 0.94727 0.79898 1.51555 0.90354 1.25168 1.04110 0.93499 0.95695 1.69733 1.37498 0.99280 1.49839 0.85284 0.78170 0.78417 0.79233 1.19454 1.19349 1.18760 0.84252 0.92262 0.92260 0.84685 0.84715 0.76433 0.79982 0.81634 0.86957 0.90615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 10.56 113.37 1.20 1.58 16 2 O -0.35 -6.30 10.56 -51.34 -0.54 -6.84 16 3 C 0.46 10.76 8.03 71.23 0.57 11.33 16 4 O -0.54 -17.85 15.42 21.95 0.34 -17.51 16 5 C 0.14 2.63 5.51 85.63 0.47 3.10 16 6 N -0.75 -23.77 5.70 -342.56 -1.95 -25.72 16 7 C 0.16 5.51 6.67 38.26 0.26 5.77 16 8 C -0.12 -3.11 9.31 22.38 0.21 -2.90 16 9 C -0.15 -4.22 10.02 22.33 0.22 -4.00 16 10 C 0.07 2.46 7.29 22.37 0.16 2.63 16 11 F -0.16 -5.86 17.26 44.97 0.78 -5.08 16 12 C -0.24 -10.79 9.14 22.41 0.20 -10.59 16 13 C 0.09 3.93 6.67 22.69 0.15 4.08 16 14 O -0.24 -12.72 7.83 -22.94 -0.18 -12.90 16 15 C -0.39 -23.32 9.95 67.91 0.68 -22.65 16 16 H 0.08 4.95 5.44 -2.91 -0.02 4.93 16 17 C 0.01 0.81 5.49 84.82 0.47 1.27 16 18 N -0.92 -56.18 13.96 21.61 0.30 -55.88 16 19 Si 0.97 47.03 28.62 68.60 1.96 48.99 16 20 H -0.27 -12.75 7.11 99.48 0.71 -12.04 16 21 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 22 H -0.26 -12.90 7.11 99.48 0.71 -12.19 16 23 H 0.14 0.87 8.14 -2.39 -0.02 0.85 16 24 H 0.06 0.90 8.13 -2.39 -0.02 0.88 16 25 H 0.06 0.89 8.13 -2.39 -0.02 0.88 16 26 H 0.14 1.73 7.95 -2.38 -0.02 1.71 16 27 H 0.14 1.74 7.95 -2.39 -0.02 1.72 16 28 H 0.40 15.53 6.81 -92.71 -0.63 14.90 16 29 H 0.18 2.62 6.73 -2.91 -0.02 2.60 16 30 H 0.17 3.27 8.06 -2.91 -0.02 3.25 16 31 H 0.11 5.76 5.64 -2.91 -0.02 5.74 16 32 H 0.28 15.91 8.31 -92.71 -0.77 15.14 16 Total: -1.00 -74.38 290.61 5.84 -68.54 By element: Atomic # 1 Polarization: 16.22 SS G_CDS: 0.55 Total: 16.77 kcal Atomic # 6 Polarization: -14.96 SS G_CDS: 4.59 Total: -10.37 kcal Atomic # 7 Polarization: -79.95 SS G_CDS: -1.65 Total: -81.60 kcal Atomic # 8 Polarization: -36.87 SS G_CDS: -0.38 Total: -37.25 kcal Atomic # 9 Polarization: -5.86 SS G_CDS: 0.78 Total: -5.08 kcal Atomic # 14 Polarization: 47.03 SS G_CDS: 1.96 Total: 48.99 kcal Total: -74.38 5.84 -68.54 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000150760067.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.089 kcal (2) G-P(sol) polarization free energy of solvation -74.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds