Wall clock time and date at job start Mon Mar 30 2020 01:44:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.80997 * 1 3 3 C 1.76203 * 100.00408 * 2 1 4 4 C 1.36524 * 125.61652 * 180.02562 * 3 2 1 5 5 C 1.39655 * 107.18769 * 179.97438 * 4 3 2 6 6 C 1.38002 * 106.74888 * 359.97438 * 5 4 3 7 7 C 1.41629 * 126.00885 * 179.97438 * 6 5 4 8 8 O 1.21803 * 119.99724 * 0.02562 * 7 6 5 9 9 N 1.34767 * 119.99860 * 179.97438 * 7 6 5 10 10 C 1.46504 * 119.99842 * 180.02562 * 9 7 6 11 11 C 1.53005 * 109.46938 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.47112 * 179.97438 * 11 10 9 13 13 C 1.50694 * 109.47375 * 179.97438 * 12 11 10 14 14 H 1.08007 * 119.99876 * 0.02562 * 13 12 11 15 15 C 1.37878 * 120.00221 * 180.02562 * 13 12 11 16 16 N 1.31511 * 119.99835 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 119.99894 * 180.02562 * 15 13 12 18 18 H 1.48493 * 109.47382 * 60.00158 * 17 15 13 19 19 H 1.48507 * 109.47029 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.47135 * 299.99926 * 17 15 13 21 21 O 1.34157 * 125.60915 * 359.97438 * 3 2 1 22 22 H 1.09005 * 109.47075 * 59.99489 * 1 2 3 23 23 H 1.09000 * 109.47145 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.46742 * 300.00106 * 1 2 3 25 25 H 1.07998 * 126.40277 * 0.23806 * 4 3 2 26 26 H 1.07998 * 126.62147 * 180.02562 * 5 4 3 27 27 H 0.97001 * 120.00385 * 0.02562 * 9 7 6 28 28 H 1.09001 * 109.47033 * 299.99891 * 10 9 7 29 29 H 1.08989 * 109.47379 * 60.00267 * 10 9 7 30 30 H 1.08993 * 109.47305 * 300.00082 * 11 10 9 31 31 H 1.09005 * 109.47135 * 59.99747 * 11 10 9 32 32 H 1.09001 * 109.47347 * 300.00176 * 12 11 10 33 33 H 1.09005 * 109.46927 * 60.00110 * 12 11 10 34 34 H 0.97004 * 120.00030 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1161 1.7352 0.0000 4 6 3.3472 2.3254 -0.0005 5 6 3.1425 3.7069 -0.0009 6 6 1.7771 3.9067 -0.0012 7 6 1.1191 5.1608 -0.0012 8 8 1.7702 6.1902 -0.0013 9 7 -0.2275 5.2152 -0.0020 10 6 -0.9082 6.5126 -0.0025 11 6 -2.4225 6.2939 -0.0028 12 6 -3.1334 7.6487 -0.0027 13 6 -4.6249 7.4335 -0.0037 14 1 -5.0258 6.4306 -0.0039 15 6 -5.4778 8.5168 -0.0043 16 7 -4.9897 9.7380 -0.0045 17 14 -7.3266 8.2499 -0.0047 18 1 -7.7169 7.4867 1.2079 19 1 -8.0166 9.5649 -0.0060 20 1 -7.7162 7.4859 -1.2171 21 8 1.1776 2.6940 -0.0005 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 4.3009 1.8186 -0.0046 26 1 3.9056 4.4712 -0.0017 27 1 -0.7461 4.3955 -0.0023 28 1 -0.6225 7.0731 0.8876 29 1 -0.6215 7.0729 -0.8923 30 1 -2.7085 5.7332 -0.8927 31 1 -2.7089 5.7336 0.8872 32 1 -2.8474 8.2091 0.8874 33 1 -2.8470 8.2094 -0.8926 34 1 -5.5898 10.5001 -0.0053 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171996852.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:07 Heat of formation + Delta-G solvation = -35.907897 kcal Electronic energy + Delta-G solvation = -17323.727119 eV Core-core repulsion = 14349.241559 eV Total energy + Delta-G solvation = -2974.485559 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.087 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.85059 -39.40223 -35.57007 -33.60448 -33.20473 -31.52061 -30.24573 -29.36773 -26.86569 -24.23202 -22.63887 -22.02394 -20.78378 -20.15779 -18.85884 -17.49789 -16.79954 -16.46123 -15.57971 -15.34932 -15.20710 -14.48312 -14.12088 -14.07068 -14.00575 -13.75663 -13.33913 -13.23112 -12.50282 -12.30444 -11.87400 -11.79287 -11.39204 -10.90815 -10.78306 -10.66311 -10.54126 -10.28212 -9.90370 -9.81641 -9.46615 -9.16314 -8.90790 -8.38944 -7.78759 -6.03633 -4.07000 0.64862 0.74571 1.40168 1.98629 2.96962 3.22671 3.30607 3.35403 3.36643 3.42084 4.42559 4.55777 4.62626 4.66103 4.80404 5.18088 5.27659 5.32059 5.39526 5.49846 5.67151 5.72473 5.99443 6.10968 6.32268 6.38501 6.54927 6.77275 6.95243 7.56287 7.60714 7.73261 7.94628 8.15636 8.35826 8.99288 9.57210 11.07633 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.026063 B = 0.003240 C = 0.002891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.067185 B = 8638.876064 C = 9681.893570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 S -0.008 6.008 3 C -0.007 4.007 4 C -0.189 4.189 5 C -0.099 4.099 6 C -0.075 4.075 7 C 0.593 3.407 8 O -0.526 6.526 9 N -0.715 5.715 10 C 0.114 3.886 11 C -0.121 4.121 12 C 0.024 3.976 13 C -0.524 4.524 14 H 0.055 0.945 15 C 0.057 3.943 16 N -0.894 5.894 17 Si 0.894 3.106 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.277 1.277 21 O -0.156 6.156 22 H 0.093 0.907 23 H 0.112 0.888 24 H 0.093 0.907 25 H 0.162 0.838 26 H 0.167 0.833 27 H 0.401 0.599 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.020 0.980 33 H 0.020 0.980 34 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.406 -20.219 0.006 24.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.328 4.328 2 S 0.230 5.770 3 C -0.171 4.171 4 C -0.216 4.216 5 C -0.121 4.121 6 C -0.132 4.132 7 C 0.380 3.620 8 O -0.405 6.405 9 N -0.365 5.365 10 C -0.008 4.008 11 C -0.159 4.159 12 C -0.013 4.013 13 C -0.563 4.563 14 H 0.073 0.927 15 C -0.144 4.144 16 N -0.532 5.532 17 Si 0.721 3.279 18 H -0.202 1.202 19 H -0.212 1.212 20 H -0.202 1.202 21 O -0.053 6.053 22 H 0.112 0.888 23 H 0.130 0.870 24 H 0.112 0.888 25 H 0.179 0.821 26 H 0.185 0.815 27 H 0.235 0.765 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.038 0.962 33 H 0.038 0.962 34 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 15.123 -20.334 0.006 25.341 hybrid contribution -2.027 0.552 0.000 2.100 sum 13.096 -19.782 0.006 23.724 Atomic orbital electron populations 1.23670 0.94078 1.07673 1.07344 1.85960 1.07467 0.91160 1.92436 1.24781 0.90188 0.93920 1.08171 1.21510 0.97212 0.93430 1.09488 1.22172 0.94620 0.96287 0.99018 1.21512 0.92908 0.83774 1.14974 1.15380 0.82695 0.85797 0.78123 1.90920 1.65613 1.32767 1.51216 1.46191 1.05769 1.11189 1.73320 1.21750 0.93638 0.82976 1.02415 1.21904 0.90703 1.02369 1.00954 1.19024 0.94567 0.90001 0.97730 1.21161 0.91343 0.92560 1.51191 0.92708 1.25026 0.98950 0.95215 0.95228 1.69953 1.35082 0.97826 1.50380 0.86635 0.85325 0.77308 0.78586 1.20238 1.21238 1.20243 1.84278 1.35394 1.14129 1.71457 0.88809 0.86955 0.88814 0.82068 0.81533 0.76461 0.91289 0.91283 0.92671 0.92675 0.96197 0.96197 0.92829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.95 10.08 101.05 1.02 0.07 16 2 S -0.01 -0.06 22.90 -107.50 -2.46 -2.52 16 3 C -0.01 -0.07 7.29 30.11 0.22 0.15 16 4 C -0.19 -1.89 10.82 -39.67 -0.43 -2.32 16 5 C -0.10 -1.16 10.57 -39.14 -0.41 -1.57 16 6 C -0.08 -1.02 6.96 -38.38 -0.27 -1.29 16 7 C 0.59 9.48 7.59 -14.97 -0.11 9.36 16 8 O -0.53 -10.00 16.79 5.10 0.09 -9.92 16 9 N -0.72 -10.87 5.55 -63.21 -0.35 -11.22 16 10 C 0.11 2.02 5.67 -4.04 -0.02 2.00 16 11 C -0.12 -2.37 5.27 -26.73 -0.14 -2.51 16 12 C 0.02 0.62 4.97 -27.89 -0.14 0.48 16 13 C -0.52 -14.60 9.11 -34.44 -0.31 -14.91 16 14 H 0.05 1.46 7.74 -52.48 -0.41 1.06 16 15 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 16 N -0.89 -26.75 13.29 55.43 0.74 -26.01 16 17 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 18 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 19 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 20 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 21 O -0.16 -1.87 9.74 3.34 0.03 -1.83 16 22 H 0.09 0.58 8.14 -51.91 -0.42 0.16 16 23 H 0.11 0.44 8.14 -51.92 -0.42 0.01 16 24 H 0.09 0.58 8.14 -51.91 -0.42 0.16 16 25 H 0.16 1.18 8.06 -52.49 -0.42 0.75 16 26 H 0.17 1.74 8.06 -52.49 -0.42 1.32 16 27 H 0.40 5.20 8.12 -40.82 -0.33 4.87 16 28 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 29 H 0.07 1.27 8.14 -51.94 -0.42 0.85 16 30 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 31 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 32 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 316.48 15.07 4.77 4.77 Total: -1.00 -31.99 316.48 -7.43 -39.42 By element: Atomic # 1 Polarization: 4.46 SS G_CDS: -4.52 Total: -0.06 kcal Atomic # 6 Polarization: -8.31 SS G_CDS: -0.70 Total: -9.01 kcal Atomic # 7 Polarization: -37.62 SS G_CDS: 0.39 Total: -37.23 kcal Atomic # 8 Polarization: -11.87 SS G_CDS: 0.12 Total: -11.75 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 16 Polarization: -0.06 SS G_CDS: -2.46 Total: -2.52 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -31.99 -7.43 -39.42 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171996852.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.512 kcal (2) G-P(sol) polarization free energy of solvation -31.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds