Wall clock time and date at job start Mon Mar 30 2020 01:44:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.80997 * 1 3 3 C 1.76203 * 100.00408 * 2 1 4 4 C 1.36524 * 125.61652 * 180.02562 * 3 2 1 5 5 C 1.39655 * 107.18769 * 179.97438 * 4 3 2 6 6 C 1.38002 * 106.74888 * 359.97438 * 5 4 3 7 7 C 1.41629 * 126.00885 * 179.97438 * 6 5 4 8 8 O 1.21803 * 119.99724 * 0.02562 * 7 6 5 9 9 N 1.34767 * 119.99860 * 179.97438 * 7 6 5 10 10 C 1.46504 * 119.99842 * 180.02562 * 9 7 6 11 11 C 1.53005 * 109.46938 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.47112 * 179.97438 * 11 10 9 13 13 C 1.50694 * 109.47375 * 179.97438 * 12 11 10 14 14 H 1.08007 * 119.99876 * 0.02562 * 13 12 11 15 15 C 1.37878 * 120.00221 * 180.02562 * 13 12 11 16 16 N 1.31511 * 119.99835 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 119.99894 * 180.02562 * 15 13 12 18 18 H 1.48493 * 109.47382 * 60.00158 * 17 15 13 19 19 H 1.48507 * 109.47029 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.47135 * 299.99926 * 17 15 13 21 21 O 1.34157 * 125.60915 * 359.97438 * 3 2 1 22 22 H 1.09005 * 109.47075 * 59.99489 * 1 2 3 23 23 H 1.09000 * 109.47145 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.46742 * 300.00106 * 1 2 3 25 25 H 1.07998 * 126.40277 * 0.23806 * 4 3 2 26 26 H 1.07998 * 126.62147 * 180.02562 * 5 4 3 27 27 H 0.97001 * 120.00385 * 0.02562 * 9 7 6 28 28 H 1.09001 * 109.47033 * 299.99891 * 10 9 7 29 29 H 1.08989 * 109.47379 * 60.00267 * 10 9 7 30 30 H 1.08993 * 109.47305 * 300.00082 * 11 10 9 31 31 H 1.09005 * 109.47135 * 59.99747 * 11 10 9 32 32 H 1.09001 * 109.47347 * 300.00176 * 12 11 10 33 33 H 1.09005 * 109.46927 * 60.00110 * 12 11 10 34 34 H 0.97004 * 120.00030 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1161 1.7352 0.0000 4 6 3.3472 2.3254 -0.0005 5 6 3.1425 3.7069 -0.0009 6 6 1.7771 3.9067 -0.0012 7 6 1.1191 5.1608 -0.0012 8 8 1.7702 6.1902 -0.0013 9 7 -0.2275 5.2152 -0.0020 10 6 -0.9082 6.5126 -0.0025 11 6 -2.4225 6.2939 -0.0028 12 6 -3.1334 7.6487 -0.0027 13 6 -4.6249 7.4335 -0.0037 14 1 -5.0258 6.4306 -0.0039 15 6 -5.4778 8.5168 -0.0043 16 7 -4.9897 9.7380 -0.0045 17 14 -7.3266 8.2499 -0.0047 18 1 -7.7169 7.4867 1.2079 19 1 -8.0166 9.5649 -0.0060 20 1 -7.7162 7.4859 -1.2171 21 8 1.1776 2.6940 -0.0005 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 4.3009 1.8186 -0.0046 26 1 3.9056 4.4712 -0.0017 27 1 -0.7461 4.3955 -0.0023 28 1 -0.6225 7.0731 0.8876 29 1 -0.6215 7.0729 -0.8923 30 1 -2.7085 5.7332 -0.8927 31 1 -2.7089 5.7336 0.8872 32 1 -2.8474 8.2091 0.8874 33 1 -2.8470 8.2094 -0.8926 34 1 -5.5898 10.5001 -0.0053 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171996852.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:06 Heat of formation + Delta-G solvation = -56.620880 kcal Electronic energy + Delta-G solvation = -17324.625301 eV Core-core repulsion = 14349.241559 eV Total energy + Delta-G solvation = -2975.383742 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.087 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.73358 -40.67662 -37.10403 -35.30604 -34.26984 -33.22386 -31.33564 -29.89999 -28.59840 -25.72294 -24.04139 -22.95582 -22.37452 -21.36857 -19.84893 -18.59325 -18.39154 -17.74648 -17.02735 -16.59862 -16.45011 -16.06345 -15.33376 -15.31766 -14.57623 -14.49462 -14.35115 -14.19751 -14.10784 -13.77382 -13.56441 -13.13081 -12.73297 -12.59086 -12.43979 -12.02917 -11.73737 -11.71286 -11.35863 -11.34569 -11.16916 -10.71379 -10.55522 -10.22592 -8.48855 -8.20140 -6.31880 -0.32672 0.01599 0.83646 1.12863 1.41304 1.44345 1.52240 1.95354 2.07482 2.30470 2.42494 3.13569 3.74321 3.81473 4.11462 4.16844 4.20001 4.23810 4.31774 4.47757 4.51109 4.75259 4.85738 4.89911 4.90145 5.12306 5.16637 5.27100 5.47719 5.51427 5.68601 5.82719 6.20883 6.37155 6.85091 6.94975 7.37699 8.91796 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.026063 B = 0.003240 C = 0.002891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.067185 B = 8638.876064 C = 9681.893570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 S 0.013 5.987 3 C -0.007 4.007 4 C -0.194 4.194 5 C -0.088 4.088 6 C -0.112 4.112 7 C 0.596 3.404 8 O -0.566 6.566 9 N -0.707 5.707 10 C 0.128 3.872 11 C -0.102 4.102 12 C 0.025 3.975 13 C -0.544 4.544 14 H 0.066 0.934 15 C -0.003 4.003 16 N -0.935 5.935 17 Si 0.967 3.033 18 H -0.265 1.265 19 H -0.286 1.286 20 H -0.265 1.265 21 O -0.159 6.159 22 H 0.092 0.908 23 H 0.137 0.863 24 H 0.092 0.908 25 H 0.190 0.810 26 H 0.174 0.826 27 H 0.414 0.586 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.067 0.933 31 H 0.067 0.933 32 H -0.006 1.006 33 H -0.006 1.006 34 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.024 -23.148 0.006 27.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.331 4.331 2 S 0.252 5.748 3 C -0.170 4.170 4 C -0.220 4.220 5 C -0.110 4.110 6 C -0.168 4.168 7 C 0.386 3.614 8 O -0.449 6.449 9 N -0.358 5.358 10 C 0.004 3.996 11 C -0.140 4.140 12 C -0.013 4.013 13 C -0.582 4.582 14 H 0.084 0.916 15 C -0.200 4.200 16 N -0.575 5.575 17 Si 0.792 3.208 18 H -0.190 1.190 19 H -0.211 1.211 20 H -0.190 1.190 21 O -0.056 6.056 22 H 0.111 0.889 23 H 0.155 0.845 24 H 0.111 0.889 25 H 0.207 0.793 26 H 0.192 0.808 27 H 0.250 0.750 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.012 0.988 33 H 0.012 0.988 34 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 14.734 -23.314 0.006 27.580 hybrid contribution -1.844 1.311 0.000 2.262 sum 12.891 -22.003 0.006 25.501 Atomic orbital electron populations 1.23813 0.92734 1.09261 1.07260 1.85975 1.08957 0.88369 1.91532 1.25481 0.90371 0.95126 1.06058 1.21845 0.98349 0.92596 1.09256 1.22451 0.94081 0.97547 0.96925 1.21033 0.93367 0.83516 1.18841 1.15582 0.82436 0.86383 0.77046 1.90888 1.66316 1.34428 1.53252 1.45950 1.05835 1.10619 1.73358 1.21367 0.92674 0.84087 1.01425 1.21609 0.91162 0.99155 1.02094 1.18931 0.94585 0.92552 0.95248 1.21650 0.92622 0.93162 1.50739 0.91590 1.26020 1.04446 0.94852 0.94715 1.70101 1.36999 0.98846 1.51519 0.85467 0.78740 0.77367 0.79268 1.19013 1.21126 1.19024 1.84249 1.35723 1.13833 1.71827 0.88897 0.84518 0.88903 0.79297 0.80808 0.74973 0.92416 0.92408 0.91430 0.91434 0.98761 0.98767 0.92761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.50 10.08 113.37 1.14 -0.36 16 2 S 0.01 0.17 22.90 -56.49 -1.29 -1.12 16 3 C -0.01 -0.12 7.29 67.42 0.49 0.37 16 4 C -0.19 -3.43 10.82 22.21 0.24 -3.19 16 5 C -0.09 -1.97 10.57 22.56 0.24 -1.73 16 6 C -0.11 -2.96 6.96 23.05 0.16 -2.80 16 7 C 0.60 19.25 7.59 85.08 0.65 19.90 16 8 O -0.57 -22.17 16.79 -4.68 -0.08 -22.25 16 9 N -0.71 -21.44 5.55 -472.09 -2.62 -24.06 16 10 C 0.13 4.61 5.67 86.38 0.49 5.10 16 11 C -0.10 -3.98 5.27 30.60 0.16 -3.82 16 12 C 0.02 1.28 4.97 29.85 0.15 1.43 16 13 C -0.54 -30.36 9.11 25.60 0.23 -30.13 16 14 H 0.07 3.45 7.74 -2.91 -0.02 3.43 16 15 C 0.00 -0.15 5.46 84.66 0.46 0.32 16 16 N -0.93 -57.08 13.29 21.45 0.28 -56.79 16 17 Si 0.97 43.66 29.54 68.60 2.03 45.68 16 18 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 19 H -0.29 -12.74 7.11 99.48 0.71 -12.03 16 20 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 21 O -0.16 -3.60 9.74 -10.96 -0.11 -3.71 16 22 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 23 H 0.14 0.61 8.14 -2.40 -0.02 0.59 16 24 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 25 H 0.19 2.16 8.06 -2.91 -0.02 2.14 16 26 H 0.17 3.51 8.06 -2.91 -0.02 3.48 16 27 H 0.41 10.34 8.12 -92.71 -0.75 9.58 16 28 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 29 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 30 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 31 H 0.07 2.47 8.14 -2.38 -0.02 2.45 16 32 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 33 H -0.01 -0.34 8.14 -2.38 -0.02 -0.36 16 34 H 0.26 15.17 8.31 -92.70 -0.77 14.40 16 Total: -1.00 -69.62 316.48 2.98 -66.64 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: 0.35 Total: 10.54 kcal Atomic # 6 Polarization: -19.34 SS G_CDS: 4.41 Total: -14.92 kcal Atomic # 7 Polarization: -78.52 SS G_CDS: -2.33 Total: -80.85 kcal Atomic # 8 Polarization: -25.77 SS G_CDS: -0.19 Total: -25.96 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.68 kcal Atomic # 16 Polarization: 0.17 SS G_CDS: -1.29 Total: -1.12 kcal Total: -69.62 2.98 -66.64 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171996852.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.015 kcal (2) G-P(sol) polarization free energy of solvation -69.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds