Wall clock time and date at job start Mon Mar 30 2020 00:49:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47321 * 2 1 4 4 C 1.50695 * 109.47479 * 180.02562 * 3 2 1 5 5 N 1.29391 * 124.70391 * 90.02223 * 4 3 2 6 6 C 1.30914 * 117.46856 * 179.97438 * 5 4 3 7 7 C 1.36760 * 113.93325 * 0.02562 * 6 5 4 8 8 C 1.46496 * 126.18245 * 179.97438 * 7 6 5 9 9 O 1.21612 * 120.00306 * 180.02562 * 8 7 6 10 10 O 1.34876 * 119.99872 * 0.02562 * 8 7 6 11 11 C 1.45206 * 116.99924 * 179.97438 * 10 8 7 12 12 C 1.53000 * 109.46784 * 179.97438 * 11 10 8 13 13 C 1.50699 * 109.46883 * 180.02562 * 12 11 10 14 14 H 1.08001 * 120.00326 * 0.02562 * 13 12 11 15 15 C 1.37878 * 120.00012 * 180.02562 * 13 12 11 16 16 N 1.31508 * 119.99977 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 120.00021 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.46815 * 89.99680 * 17 15 13 19 19 H 1.48497 * 109.47282 * 210.00098 * 17 15 13 20 20 H 1.48503 * 109.47011 * 330.00441 * 17 15 13 21 21 S 1.70923 * 124.70931 * 269.98907 * 4 3 2 22 22 H 1.09007 * 109.47202 * 179.97438 * 1 2 3 23 23 H 1.09007 * 109.47237 * 299.99667 * 1 2 3 24 24 H 1.08997 * 109.47749 * 59.99870 * 1 2 3 25 25 H 1.09005 * 109.46726 * 240.00374 * 2 1 3 26 26 H 1.08997 * 109.47187 * 120.00647 * 2 1 3 27 27 H 1.09007 * 109.46693 * 60.00000 * 3 2 1 28 28 H 1.09002 * 109.47253 * 300.00857 * 3 2 1 29 29 H 1.08001 * 123.03699 * 179.73614 * 6 5 4 30 30 H 1.08997 * 109.46863 * 300.00122 * 11 10 8 31 31 H 1.09001 * 109.46801 * 60.00494 * 11 10 8 32 32 H 1.08999 * 109.47274 * 300.00184 * 12 11 10 33 33 H 1.09001 * 109.46946 * 60.00708 * 12 11 10 34 34 H 0.97003 * 119.99835 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5470 1.4425 -0.0006 5 7 4.2832 1.4431 -1.0647 6 6 5.5820 1.4435 -0.9003 7 6 5.9755 1.4428 0.4094 8 6 7.3567 1.4425 0.8975 9 8 7.5792 1.4413 2.0931 10 8 8.3817 1.4436 0.0208 11 6 9.7236 1.4438 0.5755 12 6 10.7460 1.4444 -0.5628 13 6 12.1387 1.4440 0.0129 14 1 12.2805 1.4430 1.0836 15 6 13.2319 1.4450 -0.8272 16 7 13.0593 1.4458 -2.1309 17 14 14.9583 1.4438 -0.1136 18 1 15.4154 0.0434 0.0737 19 1 15.8790 2.1450 -1.0440 20 1 14.9526 2.1420 1.1971 21 16 4.5208 1.4426 1.4040 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8901 24 1 -0.3634 0.5138 -0.8899 25 1 1.8932 -0.5138 -0.8901 26 1 1.8933 -0.5139 0.8899 27 1 1.6766 1.9563 0.8901 28 1 1.6766 1.9564 -0.8899 29 1 6.2798 1.4399 -1.7247 30 1 9.8626 2.3334 1.1898 31 1 9.8635 0.5534 1.1885 32 1 10.6067 0.5546 -1.1767 33 1 10.6063 2.3346 -1.1761 34 1 13.8285 1.4468 -2.7219 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000173328344.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:46 Heat of formation + Delta-G solvation = -85.483197 kcal Electronic energy + Delta-G solvation = -17082.852021 eV Core-core repulsion = 14106.216715 eV Total energy + Delta-G solvation = -2976.635306 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.087 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.57540 -40.67974 -37.76465 -36.14212 -35.47010 -32.70531 -31.75896 -29.27008 -27.06456 -25.60757 -23.88809 -22.87026 -22.50477 -21.08331 -19.23971 -18.86091 -18.19458 -17.67328 -17.43798 -16.53554 -16.07894 -15.89374 -15.40901 -15.13766 -15.03731 -14.60494 -14.37968 -13.91707 -13.20861 -13.14360 -12.98655 -12.82001 -12.65844 -12.63770 -12.55839 -12.14538 -12.13319 -11.67998 -11.60168 -11.55588 -11.44960 -10.80259 -10.69267 -10.62287 -10.04922 -8.28355 -6.41666 -1.04992 -0.12701 0.46786 1.07244 1.40627 1.42577 1.53578 1.74331 1.78639 2.39311 2.92020 3.06276 3.59569 3.75865 4.03626 4.06694 4.11415 4.18266 4.19938 4.53045 4.64585 4.68084 4.79659 4.91365 4.95057 5.13924 5.24412 5.28510 5.42231 5.43867 5.46327 5.70565 6.04002 6.39561 6.52884 6.71806 7.28126 8.84302 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.055728 B = 0.002971 C = 0.002867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 502.321171 B = 9421.502523 C = 9762.760804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.118 4.118 3 C -0.049 4.049 4 C 0.068 3.932 5 N -0.501 5.501 6 C 0.138 3.862 7 C -0.332 4.332 8 C 0.542 3.458 9 O -0.538 6.538 10 O -0.352 6.352 11 C 0.092 3.908 12 C 0.031 3.969 13 C -0.550 4.550 14 H 0.066 0.934 15 C 0.006 3.994 16 N -0.927 5.927 17 Si 0.974 3.026 18 H -0.270 1.270 19 H -0.279 1.279 20 H -0.263 1.263 21 S 0.262 5.738 22 H 0.060 0.940 23 H 0.068 0.932 24 H 0.061 0.939 25 H 0.058 0.942 26 H 0.068 0.932 27 H 0.117 0.883 28 H 0.108 0.892 29 H 0.196 0.804 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.008 0.992 33 H 0.008 0.992 34 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.598 -0.826 5.185 26.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.158 4.158 3 C -0.090 4.090 4 C -0.205 4.205 5 N -0.215 5.215 6 C -0.022 4.022 7 C -0.454 4.454 8 C 0.387 3.613 9 O -0.430 6.430 10 O -0.269 6.269 11 C 0.019 3.981 12 C -0.006 4.006 13 C -0.588 4.588 14 H 0.084 0.916 15 C -0.193 4.193 16 N -0.566 5.566 17 Si 0.798 3.202 18 H -0.195 1.195 19 H -0.204 1.204 20 H -0.187 1.187 21 S 0.522 5.478 22 H 0.079 0.921 23 H 0.087 0.913 24 H 0.080 0.920 25 H 0.076 0.924 26 H 0.086 0.914 27 H 0.135 0.865 28 H 0.127 0.873 29 H 0.213 0.787 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.027 0.973 33 H 0.027 0.973 34 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -25.924 -0.812 5.985 26.619 hybrid contribution 2.079 -0.025 -0.720 2.200 sum -23.845 -0.837 5.266 24.434 Atomic orbital electron populations 1.21742 0.93306 1.02626 1.02899 1.21553 0.97616 0.93991 1.02629 1.20721 0.81596 1.00057 1.06599 1.28404 1.03519 0.97436 0.91148 1.66272 1.04467 1.18609 1.32198 1.22910 0.91528 0.92491 0.95276 1.25018 0.95893 1.25161 0.99324 1.19778 0.85297 0.72240 0.84002 1.90842 1.86447 1.48256 1.17494 1.86584 1.16886 1.83211 1.40199 1.23296 0.75623 1.01415 0.97807 1.18993 0.91650 0.96881 0.93080 1.21360 0.91042 1.52582 0.93812 0.91581 1.25969 1.04176 0.94056 0.95105 1.70092 1.32412 1.50321 1.03728 0.85313 0.77803 0.78687 0.78444 1.19520 1.20385 1.18707 1.83801 0.92036 1.63425 1.08548 0.92051 0.91285 0.91979 0.92356 0.91370 0.86514 0.87330 0.78677 0.91787 0.91789 0.97350 0.97333 0.92301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.91 71.98 0.71 -0.29 16 2 C -0.12 -1.21 5.92 30.59 0.18 -1.03 16 3 C -0.05 -0.53 5.79 29.85 0.17 -0.35 16 4 C 0.07 1.28 6.63 88.47 0.59 1.87 16 5 N -0.50 -12.21 10.50 -189.54 -1.99 -14.20 16 6 C 0.14 3.77 11.20 84.48 0.95 4.72 16 7 C -0.33 -9.94 6.51 24.08 0.16 -9.79 16 8 C 0.54 20.44 7.92 69.97 0.55 21.00 16 9 O -0.54 -22.30 16.76 19.47 0.33 -21.98 16 10 O -0.35 -14.70 10.02 -57.90 -0.58 -15.28 16 11 C 0.09 4.19 5.42 71.98 0.39 4.58 16 12 C 0.03 1.69 5.35 29.85 0.16 1.85 16 13 C -0.55 -31.29 9.11 25.60 0.23 -31.05 16 14 H 0.07 3.59 7.74 -2.91 -0.02 3.56 16 15 C 0.01 0.34 5.46 84.66 0.46 0.80 16 16 N -0.93 -55.63 13.29 21.45 0.28 -55.35 16 17 Si 0.97 43.71 29.54 68.60 2.03 45.74 16 18 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 19 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16 20 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 21 S 0.26 5.62 23.00 -56.49 -1.30 4.32 16 22 H 0.06 0.41 8.14 -2.38 -0.02 0.40 16 23 H 0.07 0.33 8.14 -2.38 -0.02 0.31 16 24 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 25 H 0.06 0.77 8.14 -2.38 -0.02 0.75 16 26 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 27 H 0.12 0.68 8.14 -2.38 -0.02 0.66 16 28 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.20 5.09 8.06 -2.91 -0.02 5.07 16 30 H 0.06 2.87 8.14 -2.39 -0.02 2.85 16 31 H 0.06 2.87 8.14 -2.39 -0.02 2.85 16 32 H 0.01 0.46 8.14 -2.39 -0.02 0.45 16 33 H 0.01 0.47 8.14 -2.39 -0.02 0.46 16 34 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 Total: -1.00 -68.21 317.31 4.41 -63.80 By element: Atomic # 1 Polarization: -0.45 SS G_CDS: 1.09 Total: 0.64 kcal Atomic # 6 Polarization: -12.25 SS G_CDS: 4.56 Total: -7.69 kcal Atomic # 7 Polarization: -67.84 SS G_CDS: -1.71 Total: -69.55 kcal Atomic # 8 Polarization: -37.00 SS G_CDS: -0.25 Total: -37.26 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Atomic # 16 Polarization: 5.62 SS G_CDS: -1.30 Total: 4.32 kcal Total: -68.21 4.41 -63.80 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173328344.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.686 kcal (2) G-P(sol) polarization free energy of solvation -68.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds