Wall clock time and date at job start Mon Mar 30 2020 01:44:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81405 * 1 3 3 O 1.42100 * 108.58227 * 2 1 4 4 O 1.42100 * 108.57374 * 228.97753 * 2 1 3 5 5 C 1.81398 * 101.92362 * 114.49519 * 2 1 3 6 6 C 1.52993 * 109.47403 * 179.97438 * 5 2 1 7 7 H 1.09003 * 109.47203 * 304.99501 * 6 5 2 8 8 N 1.46500 * 109.47545 * 64.99362 * 6 5 2 9 9 C 1.36934 * 120.00433 * 275.00613 * 8 6 5 10 10 H 1.08000 * 119.99589 * 359.97438 * 9 8 6 11 11 C 1.38807 * 120.00239 * 179.97438 * 9 8 6 12 12 N 1.31614 * 120.00028 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 119.99766 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.46915 * 90.00374 * 13 11 9 15 15 H 1.48499 * 109.47155 * 209.99894 * 13 11 9 16 16 H 1.48494 * 109.47402 * 330.00219 * 13 11 9 17 17 C 1.50702 * 109.47442 * 184.99994 * 6 5 2 18 18 C 1.38234 * 120.00271 * 99.99361 * 17 6 5 19 19 C 1.38230 * 119.99880 * 179.97438 * 18 17 6 20 20 C 1.38235 * 120.00326 * 359.97438 * 19 18 17 21 21 C 1.38234 * 119.99814 * 359.97438 * 20 19 18 22 22 C 1.38234 * 119.99485 * 279.97488 * 17 6 5 23 23 H 1.09002 * 109.46378 * 305.50985 * 1 2 3 24 24 H 1.08995 * 109.47189 * 65.50614 * 1 2 3 25 25 H 1.08992 * 109.47146 * 185.51157 * 1 2 3 26 26 H 1.08999 * 109.47025 * 59.99190 * 5 2 1 27 27 H 1.09010 * 109.46647 * 299.99716 * 5 2 1 28 28 H 0.96999 * 119.99648 * 95.00007 * 8 6 5 29 29 H 0.97004 * 119.99907 * 179.97438 * 12 11 9 30 30 H 1.08001 * 119.99769 * 359.97438 * 18 17 6 31 31 H 1.08000 * 120.00376 * 180.02562 * 19 18 17 32 32 H 1.08000 * 120.00616 * 179.72578 * 20 19 18 33 33 H 1.08001 * 120.00299 * 179.97438 * 21 20 19 34 34 H 1.07997 * 120.00489 * 0.02562 * 22 17 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2669 1.3469 0.0000 4 8 2.2667 -0.8841 -1.0162 5 6 2.1888 -0.7359 1.6151 6 6 3.7055 -0.8198 1.7978 7 1 4.1428 -1.3637 0.9604 8 7 4.2670 0.5324 1.8482 9 6 4.5751 1.1897 0.6871 10 1 4.4045 0.7110 -0.2659 11 6 5.1066 2.4711 0.7350 12 7 5.3139 3.0545 1.8963 13 14 5.5275 3.3673 -0.8490 14 1 4.3468 4.1423 -1.3080 15 1 6.6634 4.2927 -0.6073 16 1 5.9067 2.3796 -1.8909 17 6 4.0175 -1.5416 3.0833 18 6 4.3769 -2.8762 3.0571 19 6 4.6636 -3.5381 4.2363 20 6 4.5915 -2.8653 5.4417 21 6 4.2332 -1.5305 5.4679 22 6 3.9447 -0.8690 4.2888 23 1 -0.3632 0.5970 0.8366 24 1 -0.3633 0.4260 -0.9351 25 1 -0.3633 -1.0228 0.0987 26 1 1.7610 -1.7371 1.6662 27 1 1.7611 -0.1173 2.4042 28 1 4.4204 0.9621 2.7042 29 1 5.6857 3.9499 1.9298 30 1 4.4336 -3.4017 2.1153 31 1 4.9447 -4.5806 4.2158 32 1 4.8112 -3.3835 6.3635 33 1 4.1764 -1.0049 6.4097 34 1 3.6639 0.1736 4.3094 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000181767341.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:50 Heat of formation + Delta-G solvation = -19.201153 kcal Electronic energy + Delta-G solvation = -18948.435154 eV Core-core repulsion = 15974.674053 eV Total energy + Delta-G solvation = -2973.761101 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.087 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.11764 -35.88545 -35.66228 -34.54458 -32.61026 -30.63800 -29.88250 -29.13138 -28.21642 -24.52473 -22.96861 -22.08496 -20.10952 -17.98760 -17.59473 -16.44556 -15.64672 -15.32346 -15.03984 -14.77352 -14.70570 -14.27039 -13.62783 -13.42375 -13.09507 -12.92631 -12.70445 -12.52726 -12.31526 -12.13671 -11.41808 -11.12728 -11.02863 -10.84950 -10.80338 -10.70424 -10.62022 -10.27059 -10.03583 -9.72260 -9.48502 -8.99140 -8.61950 -8.36934 -7.33704 -6.11351 -3.07548 0.86457 1.67662 1.70573 3.43153 3.49030 3.52680 3.83146 4.08516 4.45020 4.67633 4.90948 5.13201 5.16159 5.26206 5.31146 5.36393 5.42654 5.49620 5.63396 5.71205 5.83394 5.86781 5.97296 6.12498 6.17554 6.29381 6.35004 6.52488 6.74068 6.79357 7.03758 7.30712 7.44998 8.04689 9.20057 9.65205 10.00246 11.06760 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.016246 B = 0.008314 C = 0.006161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.088325 B = 3366.962614 C = 4543.910475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.680 4.680 2 S 2.343 3.657 3 O -0.903 6.903 4 O -0.980 6.980 5 C -0.628 4.628 6 C 0.222 3.778 7 H 0.077 0.923 8 N -0.701 5.701 9 C -0.164 4.164 10 H 0.083 0.917 11 C 0.005 3.995 12 N -0.887 5.887 13 Si 0.919 3.081 14 H -0.279 1.279 15 H -0.290 1.290 16 H -0.275 1.275 17 C -0.065 4.065 18 C -0.117 4.117 19 C -0.124 4.124 20 C -0.133 4.133 21 C -0.121 4.121 22 C -0.104 4.104 23 H 0.110 0.890 24 H 0.106 0.894 25 H 0.102 0.898 26 H 0.108 0.892 27 H 0.119 0.881 28 H 0.394 0.606 29 H 0.266 0.734 30 H 0.121 0.879 31 H 0.117 0.883 32 H 0.115 0.885 33 H 0.118 0.882 34 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.283 -9.283 5.044 11.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.822 4.822 2 S 2.526 3.474 3 O -0.896 6.896 4 O -0.975 6.975 5 C -0.758 4.758 6 C 0.111 3.889 7 H 0.095 0.905 8 N -0.344 5.344 9 C -0.305 4.305 10 H 0.101 0.899 11 C -0.198 4.198 12 N -0.536 5.536 13 Si 0.748 3.252 14 H -0.205 1.205 15 H -0.216 1.216 16 H -0.200 1.200 17 C -0.066 4.066 18 C -0.136 4.136 19 C -0.142 4.142 20 C -0.151 4.151 21 C -0.139 4.139 22 C -0.122 4.122 23 H 0.129 0.871 24 H 0.124 0.876 25 H 0.121 0.879 26 H 0.126 0.874 27 H 0.138 0.862 28 H 0.230 0.770 29 H 0.075 0.925 30 H 0.139 0.861 31 H 0.135 0.865 32 H 0.133 0.867 33 H 0.136 0.864 34 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -4.978 -9.042 4.133 11.119 hybrid contribution -0.571 0.329 0.164 0.679 sum -5.549 -8.713 4.298 11.188 Atomic orbital electron populations 1.30528 1.34060 1.08491 1.09143 1.15905 0.76839 0.76863 0.77752 1.93698 1.73319 1.36963 1.85640 1.93388 1.79335 1.69025 1.55751 1.29987 1.08319 1.11491 1.25962 1.18846 0.88161 0.87688 0.94195 0.90521 1.43008 1.71756 1.11764 1.07851 1.19542 1.28418 0.96354 0.86197 0.89903 1.24817 1.00343 0.96883 0.97708 1.69673 1.45211 1.15001 1.23762 0.85980 0.77611 0.79589 0.81997 1.20500 1.21611 1.20038 1.20203 0.97159 0.93838 0.95439 1.21051 1.00041 0.94239 0.98278 1.21037 1.00951 0.99553 0.92669 1.21045 1.01489 0.94940 0.97616 1.21114 1.00035 0.94727 0.98056 1.21078 0.99104 1.00230 0.91810 0.87114 0.87551 0.87879 0.87380 0.86222 0.77001 0.92458 0.86090 0.86541 0.86729 0.86418 0.85527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 25. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.68 -9.93 10.62 101.05 1.07 -8.86 16 2 S 2.34 44.96 4.49 -107.50 -0.48 44.48 16 3 O -0.90 -21.51 14.15 -57.83 -0.82 -22.32 16 4 O -0.98 -21.60 18.10 -57.83 -1.05 -22.65 16 5 C -0.63 -10.67 5.45 37.15 0.20 -10.47 16 6 C 0.22 4.35 2.64 -69.08 -0.18 4.17 16 7 H 0.08 1.54 7.94 -51.93 -0.41 1.13 16 8 N -0.70 -16.49 4.97 -54.55 -0.27 -16.76 16 9 C -0.16 -4.36 6.38 -15.06 -0.10 -4.46 16 10 H 0.08 2.23 6.73 -52.49 -0.35 1.88 16 11 C 0.01 0.14 5.50 -17.43 -0.10 0.05 16 12 N -0.89 -24.86 13.06 55.49 0.72 -24.13 16 13 Si 0.92 22.54 29.55 -169.99 -5.02 17.52 16 14 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 15 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 16 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 17 C -0.06 -1.12 4.95 -104.62 -0.52 -1.64 16 18 C -0.12 -1.78 9.67 -39.59 -0.38 -2.16 16 19 C -0.12 -1.64 10.05 -39.59 -0.40 -2.04 16 20 C -0.13 -1.72 10.05 -39.58 -0.40 -2.12 16 21 C -0.12 -1.71 10.05 -39.58 -0.40 -2.11 16 22 C -0.10 -1.71 9.06 -39.58 -0.36 -2.07 16 23 H 0.11 1.45 8.14 -51.92 -0.42 1.02 16 24 H 0.11 1.50 8.14 -51.93 -0.42 1.07 16 25 H 0.10 1.27 8.14 -51.93 -0.42 0.85 16 26 H 0.11 1.50 8.14 -51.92 -0.42 1.08 16 27 H 0.12 1.90 8.14 -51.92 -0.42 1.47 16 28 H 0.39 9.49 6.06 -40.82 -0.25 9.24 16 29 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 30 H 0.12 1.65 8.04 -52.49 -0.42 1.23 16 31 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 32 H 0.11 1.18 8.06 -52.49 -0.42 0.75 16 33 H 0.12 1.40 8.06 -52.49 -0.42 0.97 16 34 H 0.13 2.15 6.92 -52.49 -0.36 1.79 16 LS Contribution 298.92 15.07 4.50 4.50 Total: -1.00 -31.98 298.92 -8.28 -40.26 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: -4.32 Total: 10.82 kcal Atomic # 6 Polarization: -30.15 SS G_CDS: -1.55 Total: -31.71 kcal Atomic # 7 Polarization: -41.35 SS G_CDS: 0.45 Total: -40.90 kcal Atomic # 8 Polarization: -43.11 SS G_CDS: -1.86 Total: -44.97 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.52 kcal Atomic # 16 Polarization: 44.96 SS G_CDS: -0.48 Total: 44.48 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -31.98 -8.28 -40.26 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181767341.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.055 kcal (2) G-P(sol) polarization free energy of solvation -31.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds