Wall clock time and date at job start Mon Mar 30 2020 01:44:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81405 * 1 3 3 O 1.42100 * 108.58227 * 2 1 4 4 O 1.42100 * 108.57374 * 228.97753 * 2 1 3 5 5 C 1.81398 * 101.92362 * 114.49519 * 2 1 3 6 6 C 1.52993 * 109.47403 * 179.97438 * 5 2 1 7 7 H 1.09003 * 109.47203 * 304.99501 * 6 5 2 8 8 N 1.46500 * 109.47545 * 64.99362 * 6 5 2 9 9 C 1.36934 * 120.00433 * 275.00613 * 8 6 5 10 10 H 1.08000 * 119.99589 * 359.97438 * 9 8 6 11 11 C 1.38807 * 120.00239 * 179.97438 * 9 8 6 12 12 N 1.31614 * 120.00028 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 119.99766 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.46915 * 90.00374 * 13 11 9 15 15 H 1.48499 * 109.47155 * 209.99894 * 13 11 9 16 16 H 1.48494 * 109.47402 * 330.00219 * 13 11 9 17 17 C 1.50702 * 109.47442 * 184.99994 * 6 5 2 18 18 C 1.38234 * 120.00271 * 99.99361 * 17 6 5 19 19 C 1.38230 * 119.99880 * 179.97438 * 18 17 6 20 20 C 1.38235 * 120.00326 * 359.97438 * 19 18 17 21 21 C 1.38234 * 119.99814 * 359.97438 * 20 19 18 22 22 C 1.38234 * 119.99485 * 279.97488 * 17 6 5 23 23 H 1.09002 * 109.46378 * 305.50985 * 1 2 3 24 24 H 1.08995 * 109.47189 * 65.50614 * 1 2 3 25 25 H 1.08992 * 109.47146 * 185.51157 * 1 2 3 26 26 H 1.08999 * 109.47025 * 59.99190 * 5 2 1 27 27 H 1.09010 * 109.46647 * 299.99716 * 5 2 1 28 28 H 0.96999 * 119.99648 * 95.00007 * 8 6 5 29 29 H 0.97004 * 119.99907 * 179.97438 * 12 11 9 30 30 H 1.08001 * 119.99769 * 359.97438 * 18 17 6 31 31 H 1.08000 * 120.00376 * 180.02562 * 19 18 17 32 32 H 1.08000 * 120.00616 * 179.72578 * 20 19 18 33 33 H 1.08001 * 120.00299 * 179.97438 * 21 20 19 34 34 H 1.07997 * 120.00489 * 0.02562 * 22 17 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2669 1.3469 0.0000 4 8 2.2667 -0.8841 -1.0162 5 6 2.1888 -0.7359 1.6151 6 6 3.7055 -0.8198 1.7978 7 1 4.1428 -1.3637 0.9604 8 7 4.2670 0.5324 1.8482 9 6 4.5751 1.1897 0.6871 10 1 4.4045 0.7110 -0.2659 11 6 5.1066 2.4711 0.7350 12 7 5.3139 3.0545 1.8963 13 14 5.5275 3.3673 -0.8490 14 1 4.3468 4.1423 -1.3080 15 1 6.6634 4.2927 -0.6073 16 1 5.9067 2.3796 -1.8909 17 6 4.0175 -1.5416 3.0833 18 6 4.3769 -2.8762 3.0571 19 6 4.6636 -3.5381 4.2363 20 6 4.5915 -2.8653 5.4417 21 6 4.2332 -1.5305 5.4679 22 6 3.9447 -0.8690 4.2888 23 1 -0.3632 0.5970 0.8366 24 1 -0.3633 0.4260 -0.9351 25 1 -0.3633 -1.0228 0.0987 26 1 1.7610 -1.7371 1.6662 27 1 1.7611 -0.1173 2.4042 28 1 4.4204 0.9621 2.7042 29 1 5.6857 3.9499 1.9298 30 1 4.4336 -3.4017 2.1153 31 1 4.9447 -4.5806 4.2158 32 1 4.8112 -3.3835 6.3635 33 1 4.1764 -1.0049 6.4097 34 1 3.6639 0.1736 4.3094 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000181767341.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:49 Heat of formation + Delta-G solvation = -44.396229 kcal Electronic energy + Delta-G solvation = -18949.527694 eV Core-core repulsion = 15974.674053 eV Total energy + Delta-G solvation = -2974.853641 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.087 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.31344 -37.67437 -37.31934 -36.47223 -34.19555 -31.77780 -31.26716 -30.62414 -29.69134 -26.18552 -24.35408 -23.26114 -21.45144 -19.66746 -19.39055 -17.75397 -17.16064 -16.92514 -16.76426 -16.48649 -15.94334 -15.79150 -15.11525 -14.94618 -14.50369 -14.11752 -14.02980 -13.84830 -13.76256 -13.44567 -12.98298 -12.88825 -12.75702 -12.66757 -12.57393 -12.16976 -12.13467 -11.90741 -11.69453 -11.50244 -11.15576 -10.74145 -9.73423 -9.55852 -9.06045 -7.87985 -5.12316 -0.66801 0.52980 0.58667 1.42939 1.49915 1.53305 2.18303 2.61805 2.90587 3.09060 3.33851 3.57181 3.79857 3.94671 4.07785 4.12769 4.15092 4.23069 4.29221 4.38109 4.40589 4.58741 4.74619 4.84606 4.93810 5.04867 5.17426 5.25983 5.50310 5.65020 5.69468 5.83396 6.20513 6.30719 7.44544 8.01625 8.24924 9.35294 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.016246 B = 0.008314 C = 0.006161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.088325 B = 3366.962614 C = 4543.910475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.645 4.645 2 S 2.394 3.606 3 O -0.944 6.944 4 O -0.997 6.997 5 C -0.612 4.612 6 C 0.215 3.785 7 H 0.060 0.940 8 N -0.728 5.728 9 C -0.199 4.199 10 H 0.063 0.937 11 C -0.056 4.056 12 N -0.964 5.964 13 Si 0.944 3.056 14 H -0.292 1.292 15 H -0.290 1.290 16 H -0.276 1.276 17 C -0.084 4.084 18 C -0.127 4.127 19 C -0.119 4.119 20 C -0.126 4.126 21 C -0.125 4.125 22 C -0.123 4.123 23 H 0.145 0.855 24 H 0.132 0.868 25 H 0.152 0.848 26 H 0.157 0.843 27 H 0.139 0.861 28 H 0.383 0.617 29 H 0.248 0.752 30 H 0.132 0.868 31 H 0.150 0.850 32 H 0.149 0.851 33 H 0.137 0.863 34 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.838 -13.748 5.609 17.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.796 4.796 2 S 2.582 3.418 3 O -0.941 6.941 4 O -0.994 6.994 5 C -0.746 4.746 6 C 0.105 3.895 7 H 0.078 0.922 8 N -0.370 5.370 9 C -0.332 4.332 10 H 0.081 0.919 11 C -0.248 4.248 12 N -0.616 5.616 13 Si 0.775 3.225 14 H -0.220 1.220 15 H -0.217 1.217 16 H -0.201 1.201 17 C -0.086 4.086 18 C -0.146 4.146 19 C -0.137 4.137 20 C -0.144 4.144 21 C -0.143 4.143 22 C -0.142 4.142 23 H 0.163 0.837 24 H 0.150 0.850 25 H 0.171 0.829 26 H 0.175 0.825 27 H 0.157 0.843 28 H 0.218 0.782 29 H 0.057 0.943 30 H 0.150 0.850 31 H 0.168 0.832 32 H 0.167 0.833 33 H 0.155 0.845 34 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -9.232 -13.395 4.709 16.936 hybrid contribution -0.198 1.002 -0.155 1.034 sum -9.430 -12.392 4.554 16.225 Atomic orbital electron populations 1.30181 1.23544 1.13279 1.12625 1.08454 0.79540 0.75867 0.77977 1.93794 1.78173 1.35862 1.86247 1.93469 1.81259 1.68496 1.56204 1.30766 1.07280 1.14299 1.22207 1.18958 0.88954 0.86300 0.95287 0.92186 1.42833 1.75117 1.12780 1.06233 1.19149 1.31128 0.96645 0.86244 0.91892 1.25068 1.03185 0.98062 0.98513 1.69751 1.53006 1.14937 1.23941 0.85571 0.76826 0.79011 0.81118 1.21993 1.21672 1.20123 1.19957 0.99781 0.94727 0.94088 1.21263 1.00043 0.93455 0.99840 1.21430 0.99367 1.01043 0.91850 1.21477 0.99534 0.94316 0.99058 1.21385 0.99412 0.95602 0.97903 1.21059 1.00660 0.99640 0.92846 0.83685 0.84982 0.82926 0.82464 0.84281 0.78194 0.94298 0.84971 0.83242 0.83315 0.84500 0.87400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 -12.80 10.62 113.37 1.20 -11.59 16 2 S 2.39 81.67 4.49 -56.49 -0.25 81.41 16 3 O -0.94 -44.16 14.15 -127.37 -1.80 -45.97 16 4 O -1.00 -40.08 18.10 -127.37 -2.30 -42.39 16 5 C -0.61 -18.30 5.45 71.98 0.39 -17.91 16 6 C 0.22 8.38 2.64 44.24 0.12 8.49 16 7 H 0.06 2.45 7.94 -2.39 -0.02 2.43 16 8 N -0.73 -36.51 4.97 -326.51 -1.62 -38.13 16 9 C -0.20 -11.48 6.38 84.03 0.54 -10.94 16 10 H 0.06 3.66 6.73 -2.91 -0.02 3.64 16 11 C -0.06 -3.41 5.50 84.86 0.47 -2.94 16 12 N -0.96 -60.72 13.06 21.65 0.28 -60.44 16 13 Si 0.94 50.57 29.55 68.60 2.03 52.59 16 14 H -0.29 -15.79 7.11 99.48 0.71 -15.08 16 15 H -0.29 -15.12 7.11 99.48 0.71 -14.41 16 16 H -0.28 -14.26 7.11 99.48 0.71 -13.55 16 17 C -0.08 -2.82 4.95 -19.87 -0.10 -2.91 16 18 C -0.13 -3.55 9.67 22.27 0.22 -3.33 16 19 C -0.12 -2.69 10.05 22.27 0.22 -2.46 16 20 C -0.13 -2.78 10.05 22.27 0.22 -2.55 16 21 C -0.13 -3.28 10.05 22.27 0.22 -3.06 16 22 C -0.12 -4.05 9.06 22.27 0.20 -3.85 16 23 H 0.14 2.34 8.14 -2.39 -0.02 2.32 16 24 H 0.13 2.46 8.14 -2.39 -0.02 2.44 16 25 H 0.15 1.99 8.14 -2.39 -0.02 1.97 16 26 H 0.16 3.25 8.14 -2.39 -0.02 3.23 16 27 H 0.14 3.81 8.14 -2.38 -0.02 3.79 16 28 H 0.38 20.25 6.06 -92.71 -0.56 19.69 16 29 H 0.25 15.25 8.31 -92.71 -0.77 14.48 16 30 H 0.13 3.26 8.04 -2.91 -0.02 3.24 16 31 H 0.15 2.38 8.06 -2.91 -0.02 2.35 16 32 H 0.15 2.28 8.06 -2.91 -0.02 2.26 16 33 H 0.14 2.97 8.06 -2.91 -0.02 2.95 16 34 H 0.11 3.88 6.92 -2.91 -0.02 3.86 16 Total: -1.00 -80.95 298.92 0.57 -80.38 By element: Atomic # 1 Polarization: 25.06 SS G_CDS: 0.54 Total: 25.59 kcal Atomic # 6 Polarization: -56.76 SS G_CDS: 3.71 Total: -53.06 kcal Atomic # 7 Polarization: -97.23 SS G_CDS: -1.34 Total: -98.57 kcal Atomic # 8 Polarization: -84.25 SS G_CDS: -4.11 Total: -88.36 kcal Atomic # 14 Polarization: 50.57 SS G_CDS: 2.03 Total: 52.59 kcal Atomic # 16 Polarization: 81.67 SS G_CDS: -0.25 Total: 81.41 kcal Total: -80.95 0.57 -80.38 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181767341.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.981 kcal (2) G-P(sol) polarization free energy of solvation -80.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds