Wall clock time and date at job start Mon Mar 30 2020 01:04:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09001 * 109.47563 * 305.00337 * 3 2 1 5 5 C 1.50700 * 109.47798 * 185.00026 * 3 2 1 6 6 H 1.07998 * 120.00370 * 240.00769 * 5 3 2 7 7 C 1.37878 * 119.99824 * 59.99855 * 5 3 2 8 8 N 1.31523 * 120.00027 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99983 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47448 * 90.00055 * 9 7 5 11 11 H 1.48502 * 109.46950 * 209.99961 * 9 7 5 12 12 H 1.48502 * 109.46954 * 329.99800 * 9 7 5 13 13 N 1.46502 * 109.47005 * 64.99872 * 3 2 1 14 14 C 1.34776 * 120.00080 * 275.00208 * 13 3 2 15 15 O 1.21804 * 120.00128 * 359.97438 * 14 13 3 16 16 C 1.41630 * 119.99911 * 180.02562 * 14 13 3 17 17 C 1.37994 * 126.01073 * 180.02562 * 16 14 13 18 18 C 1.39658 * 106.75114 * 179.97438 * 17 16 14 19 19 C 1.36525 * 107.18433 * 0.02562 * 18 17 16 20 20 S 1.76204 * 125.61196 * 179.97438 * 19 18 17 21 21 C 1.80995 * 100.00173 * 179.97438 * 20 19 18 22 22 O 1.34148 * 108.77483 * 359.73176 * 19 18 17 23 23 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 24 24 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 25 25 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 27 27 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 28 28 H 0.96993 * 119.99651 * 179.97438 * 8 7 5 29 29 H 0.97001 * 119.99703 * 95.00546 * 13 3 2 30 30 H 1.07999 * 126.62800 * 359.97438 * 17 16 14 31 31 H 1.07998 * 126.40760 * 180.02562 * 18 17 16 32 32 H 1.08996 * 109.47122 * 299.99904 * 21 20 19 33 33 H 1.09004 * 109.46904 * 60.00032 * 21 20 19 34 34 H 1.08997 * 109.47070 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1473 1.8887 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1734 9 14 6.0050 0.8801 -1.3812 10 1 6.5540 -0.3519 -0.7599 11 1 6.3835 0.9215 -2.8166 12 1 6.5576 2.0720 -0.6890 13 7 1.6525 2.0974 1.2518 14 6 0.4352 2.6643 1.3670 15 8 -0.3426 2.6325 0.4301 16 6 0.0607 3.2980 2.5770 17 6 -1.1477 3.9144 2.8298 18 6 -1.0863 4.3992 4.1382 19 6 0.1418 4.0676 4.6340 20 16 0.7323 4.4470 6.2502 21 6 2.3816 3.7065 6.1640 22 8 0.8228 3.4006 3.6901 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8933 -0.5139 0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 3.8292 -0.0604 -2.9503 29 1 2.2720 2.1231 1.9978 30 1 -1.9802 4.0046 2.1478 31 1 -1.8646 4.9360 4.6600 32 1 2.2905 2.6387 5.9651 33 1 2.9503 4.1782 5.3626 34 1 2.8975 3.8570 7.1123 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183907737.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:28 Heat of formation + Delta-G solvation = -26.451374 kcal Electronic energy + Delta-G solvation = -18408.125392 eV Core-core repulsion = 15434.049898 eV Total energy + Delta-G solvation = -2974.075494 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.087 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.49777 -38.94295 -35.20591 -33.16381 -32.40063 -31.21431 -29.81643 -29.10098 -27.00574 -23.89605 -22.69626 -21.79956 -20.26044 -19.43514 -18.69201 -17.45378 -16.43543 -16.03873 -15.39278 -15.05206 -14.42158 -14.39802 -13.78849 -13.77458 -13.53430 -13.01488 -13.00052 -12.66660 -12.24381 -12.07592 -11.56549 -11.27913 -11.17238 -11.02443 -10.85871 -10.36791 -10.23689 -10.22536 -9.70653 -9.45279 -9.40156 -9.08823 -8.54230 -7.96096 -7.48195 -6.15453 -4.25061 1.02094 1.05475 1.64035 2.32441 3.22306 3.29319 3.31243 3.37106 3.81444 4.10007 4.36921 4.81313 4.87253 4.88372 5.15928 5.28889 5.48314 5.52667 5.75850 5.89847 6.32720 6.36986 6.43444 6.62428 6.70324 7.01596 7.16846 7.29089 7.35694 7.58230 7.68737 7.85324 8.13060 8.54871 8.70079 8.96658 9.41710 10.89991 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.021445 B = 0.005156 C = 0.004380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.329840 B = 5429.382664 C = 6391.320838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.128 4.128 3 C 0.268 3.732 4 H 0.053 0.947 5 C -0.535 4.535 6 H 0.061 0.939 7 C 0.068 3.932 8 N -0.881 5.881 9 Si 0.902 3.098 10 H -0.279 1.279 11 H -0.284 1.284 12 H -0.274 1.274 13 N -0.694 5.694 14 C 0.581 3.419 15 O -0.529 6.529 16 C -0.057 4.057 17 C -0.115 4.115 18 C -0.186 4.186 19 C -0.019 4.019 20 S -0.018 6.018 21 C -0.157 4.157 22 O -0.155 6.155 23 H 0.051 0.949 24 H 0.037 0.963 25 H 0.024 0.976 26 H 0.032 0.968 27 H 0.101 0.899 28 H 0.265 0.735 29 H 0.391 0.609 30 H 0.164 0.836 31 H 0.158 0.842 32 H 0.092 0.908 33 H 0.093 0.907 34 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.195 6.003 15.295 16.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.166 4.166 3 C 0.167 3.833 4 H 0.071 0.929 5 C -0.574 4.574 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.729 3.271 10 H -0.205 1.205 11 H -0.210 1.210 12 H -0.199 1.199 13 N -0.341 5.341 14 C 0.366 3.634 15 O -0.410 6.410 16 C -0.114 4.114 17 C -0.137 4.137 18 C -0.213 4.213 19 C -0.182 4.182 20 S 0.219 5.781 21 C -0.325 4.325 22 O -0.051 6.051 23 H 0.070 0.930 24 H 0.056 0.944 25 H 0.043 0.957 26 H 0.050 0.950 27 H 0.119 0.881 28 H 0.075 0.925 29 H 0.224 0.776 30 H 0.182 0.818 31 H 0.176 0.824 32 H 0.111 0.889 33 H 0.111 0.889 34 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -4.810 6.305 15.422 17.342 hybrid contribution 1.744 -0.626 -0.710 1.984 sum -3.066 5.679 14.712 16.065 Atomic orbital electron populations 1.21855 0.98281 0.98244 1.01243 1.21941 0.92685 0.99567 1.02444 1.18895 0.94484 0.89334 0.80636 0.92911 1.21201 0.90528 1.39230 1.06403 0.92095 1.24876 0.98662 0.94729 0.95304 1.69892 1.35159 1.37486 1.09315 0.86445 0.84780 0.78442 0.77432 1.20516 1.20997 1.19884 1.46542 1.14046 1.54597 1.18876 1.15419 0.83768 0.79746 0.84470 1.90888 1.51726 1.60700 1.37649 1.21988 0.92811 1.08729 0.87862 1.22109 0.97477 0.98079 0.96060 1.21453 0.96813 1.07240 0.95836 1.24621 0.95678 1.03010 0.94883 1.85785 1.16136 1.71937 1.04201 1.23630 0.96248 1.05270 1.07383 1.84297 1.41440 1.59011 1.20374 0.92990 0.94380 0.95651 0.94966 0.88061 0.92490 0.77595 0.81799 0.82430 0.88885 0.88851 0.87214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.11 8.51 37.16 0.32 -2.79 16 2 C -0.13 -3.10 5.45 -26.74 -0.15 -3.25 16 3 C 0.27 6.75 2.24 -69.08 -0.15 6.60 16 4 H 0.05 1.52 7.58 -51.93 -0.39 1.13 16 5 C -0.54 -14.09 8.73 -34.44 -0.30 -14.39 16 6 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 7 C 0.07 1.80 5.29 -17.82 -0.09 1.71 16 8 N -0.88 -24.44 11.30 55.43 0.63 -23.82 16 9 Si 0.90 20.46 29.54 -169.99 -5.02 15.44 16 10 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 11 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 12 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 13 N -0.69 -14.93 5.01 -57.82 -0.29 -15.22 16 14 C 0.58 12.13 6.16 -14.97 -0.09 12.04 16 15 O -0.53 -12.42 13.92 5.10 0.07 -12.35 16 16 C -0.06 -1.01 6.96 -38.38 -0.27 -1.27 16 17 C -0.12 -1.75 10.57 -39.14 -0.41 -2.16 16 18 C -0.19 -2.41 10.82 -39.67 -0.43 -2.84 16 19 C -0.02 -0.25 7.29 30.11 0.22 -0.03 16 20 S -0.02 -0.18 22.90 -107.50 -2.46 -2.64 16 21 C -0.16 -1.31 10.08 101.05 1.02 -0.30 16 22 O -0.15 -2.43 9.74 3.35 0.03 -2.39 16 23 H 0.05 1.22 7.84 -51.93 -0.41 0.82 16 24 H 0.04 0.83 5.64 -51.93 -0.29 0.54 16 25 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.10 2.70 5.95 -51.93 -0.31 2.39 16 28 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 29 H 0.39 7.61 8.19 -40.82 -0.33 7.27 16 30 H 0.16 2.28 8.06 -52.49 -0.42 1.85 16 31 H 0.16 1.57 8.06 -52.49 -0.42 1.15 16 32 H 0.09 0.81 8.14 -51.92 -0.42 0.39 16 33 H 0.09 0.83 8.14 -51.91 -0.42 0.41 16 34 H 0.11 0.65 8.14 -51.92 -0.42 0.22 16 LS Contribution 303.90 15.07 4.58 4.58 Total: -1.00 -29.34 303.90 -7.04 -36.38 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: -4.24 Total: 6.71 kcal Atomic # 6 Polarization: -6.35 SS G_CDS: -0.34 Total: -6.69 kcal Atomic # 7 Polarization: -39.37 SS G_CDS: 0.34 Total: -39.04 kcal Atomic # 8 Polarization: -14.85 SS G_CDS: 0.10 Total: -14.74 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Atomic # 16 Polarization: -0.18 SS G_CDS: -2.46 Total: -2.64 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -29.34 -7.04 -36.38 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183907737.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.928 kcal (2) G-P(sol) polarization free energy of solvation -29.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds