Wall clock time and date at job start Mon Mar 30 2020 02:03:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86804 * 119.99679 * 2 1 4 4 H 1.48501 * 109.47072 * 270.00235 * 3 2 1 5 5 H 1.48498 * 109.47025 * 30.00048 * 3 2 1 6 6 H 1.48500 * 109.47202 * 150.00395 * 3 2 1 7 7 C 1.38808 * 120.00430 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00354 * 196.90632 * 7 2 1 9 9 N 1.36934 * 119.99938 * 16.90304 * 7 2 1 10 10 C 1.47149 * 120.98509 * 26.23151 * 9 7 2 11 11 C 1.53291 * 108.38714 * 129.48416 * 10 9 7 12 12 O 1.42962 * 109.22412 * 52.30386 * 11 10 9 13 13 C 1.42957 * 114.16749 * 297.41894 * 12 11 10 14 14 H 1.09003 * 109.51315 * 302.61127 * 13 12 11 15 15 C 1.50696 * 109.51609 * 182.50448 * 13 12 11 16 16 C 1.38230 * 119.98532 * 335.00085 * 15 13 12 17 17 C 1.38188 * 120.05199 * 179.97438 * 16 15 13 18 18 C 1.38490 * 120.02136 * 0.02562 * 17 16 15 19 19 F 1.35102 * 120.01084 * 179.97438 * 18 17 16 20 20 C 1.38394 * 119.97970 * 0.02562 * 18 17 16 21 21 C 1.38446 * 119.94772 * 359.97438 * 20 18 17 22 22 F 1.35104 * 120.01280 * 180.02562 * 21 20 18 23 23 C 1.47152 * 120.98170 * 206.24783 * 9 7 2 24 24 H 0.96997 * 120.00361 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.67993 * 9.75688 * 10 9 7 26 26 H 1.09000 * 109.68200 * 249.21155 * 10 9 7 27 27 H 1.09000 * 109.51501 * 292.37522 * 11 10 9 28 28 H 1.09003 * 109.50863 * 172.22748 * 11 10 9 29 29 H 1.08000 * 119.97301 * 359.97428 * 16 15 13 30 30 H 1.08000 * 119.98965 * 179.74620 * 17 16 15 31 31 H 1.08000 * 120.02606 * 180.02562 * 20 18 17 32 32 H 1.09008 * 109.67806 * 110.79001 * 23 9 7 33 33 H 1.08996 * 109.68654 * 350.24166 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0465 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4403 0.6999 7 6 2.0103 -1.2021 -0.0005 8 1 3.0553 -1.2224 0.2714 9 7 1.3701 -2.3622 -0.3459 10 6 0.1974 -2.3447 -1.2346 11 6 0.4243 -3.3663 -2.3547 12 8 0.7650 -4.6293 -1.7780 13 6 1.9813 -4.6208 -1.0270 14 1 2.8005 -4.2878 -1.6644 15 6 2.2702 -6.0105 -0.5208 16 6 1.2356 -6.9098 -0.3426 17 6 1.4990 -8.1847 0.1209 18 6 2.8001 -8.5625 0.4080 19 9 3.0573 -9.8088 0.8617 20 6 3.8366 -7.6627 0.2310 21 6 3.5715 -6.3857 -0.2335 22 9 4.5824 -5.5064 -0.4073 23 6 1.8342 -3.6633 0.1612 24 1 -0.4850 0.8400 0.0004 25 1 0.0769 -1.3500 -1.6637 26 1 -0.6955 -2.6118 -0.6695 27 1 1.2376 -3.0280 -2.9968 28 1 -0.4870 -3.4689 -2.9439 29 1 0.2207 -6.6157 -0.5659 30 1 0.6895 -8.8851 0.2637 31 1 4.8515 -7.9568 0.4542 32 1 1.1060 -4.0632 0.8669 33 1 2.7976 -3.5420 0.6563 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187240721.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:59 Heat of formation + Delta-G solvation = -99.155996 kcal Electronic energy + Delta-G solvation = -20531.714901 eV Core-core repulsion = 17000.646311 eV Total energy + Delta-G solvation = -3531.068589 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.097 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -50.07634 -50.00549 -40.70361 -39.23657 -36.37113 -33.81705 -33.03865 -31.82768 -30.31009 -28.48287 -25.57524 -24.95925 -24.10322 -22.81867 -21.40508 -19.29521 -18.91565 -18.34692 -17.50555 -17.05745 -16.88379 -16.70377 -16.48800 -16.34285 -16.04483 -15.52932 -15.47145 -15.30531 -15.00694 -14.59073 -14.27760 -13.67115 -13.23973 -13.09542 -12.97543 -12.69645 -12.54860 -12.41501 -12.20724 -12.13046 -11.89505 -11.40867 -10.87959 -10.61909 -10.08052 -9.69603 -8.77149 -7.93622 -5.41426 -0.13813 0.00730 1.45793 1.46886 1.56096 2.29374 2.46559 2.63451 2.84021 3.20948 3.32371 3.44915 3.64041 3.80823 3.89926 4.09617 4.13119 4.27313 4.45593 4.55286 4.62493 4.73841 4.77396 4.87289 4.92491 4.94646 5.10544 5.12252 5.30682 5.52535 5.58676 5.73266 6.19261 6.29079 7.03844 7.70486 8.24093 9.12089 Molecular weight = 269.10amu Principal moments of inertia in cm(-1) A = 0.031997 B = 0.004939 C = 0.004561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.862331 B = 5667.622102 C = 6137.933952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.044 4.044 3 Si 0.971 3.029 4 H -0.282 1.282 5 H -0.292 1.292 6 H -0.270 1.270 7 C -0.271 4.271 8 H 0.067 0.933 9 N -0.613 5.613 10 C 0.143 3.857 11 C 0.052 3.948 12 O -0.382 6.382 13 C 0.128 3.872 14 H 0.058 0.942 15 C -0.129 4.129 16 C -0.039 4.039 17 C -0.150 4.150 18 C 0.124 3.876 19 F -0.131 7.131 20 C -0.186 4.186 21 C 0.123 3.877 22 F -0.138 7.138 23 C 0.127 3.873 24 H 0.253 0.747 25 H 0.069 0.931 26 H 0.007 0.993 27 H 0.045 0.955 28 H 0.118 0.882 29 H 0.154 0.846 30 H 0.172 0.828 31 H 0.168 0.832 32 H 0.023 0.977 33 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.696 -16.040 -2.197 16.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.240 4.240 3 Si 0.798 3.202 4 H -0.208 1.208 5 H -0.218 1.218 6 H -0.195 1.195 7 C -0.401 4.401 8 H 0.085 0.915 9 N -0.337 5.337 10 C 0.018 3.982 11 C -0.026 4.026 12 O -0.301 6.301 13 C 0.069 3.931 14 H 0.076 0.924 15 C -0.131 4.131 16 C -0.057 4.057 17 C -0.169 4.169 18 C 0.104 3.896 19 F -0.110 7.110 20 C -0.205 4.205 21 C 0.104 3.896 22 F -0.116 7.116 23 C 0.001 3.999 24 H 0.062 0.938 25 H 0.088 0.912 26 H 0.025 0.975 27 H 0.063 0.937 28 H 0.136 0.864 29 H 0.171 0.829 30 H 0.189 0.811 31 H 0.185 0.815 32 H 0.041 0.959 33 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.542 -16.065 -2.186 16.596 hybrid contribution 0.650 1.453 0.251 1.612 sum 4.192 -14.612 -1.935 15.325 Atomic orbital electron populations 1.70170 1.06588 1.26191 1.54819 1.25782 0.96126 1.01431 1.00684 0.85223 0.78005 0.79174 0.77774 1.20811 1.21844 1.19529 1.19509 0.92904 0.85709 1.41973 0.91546 1.44363 1.33784 1.01696 1.53886 1.21347 0.87979 0.98430 0.90486 1.23243 1.00870 0.83450 0.95015 1.87721 1.40908 1.32353 1.69090 1.20991 0.87550 0.91355 0.93241 0.92437 1.19783 0.92760 0.96336 1.04227 1.20877 0.99688 0.91228 0.93872 1.21466 0.95947 0.97719 1.01731 1.17342 0.93589 0.80004 0.98622 1.91530 1.94923 1.38170 1.86371 1.21070 1.01943 0.91768 1.05723 1.17175 0.83522 0.87699 1.01239 1.91516 1.58930 1.68202 1.92982 1.21560 0.98181 0.86188 0.93922 0.93763 0.91228 0.97453 0.93695 0.86385 0.82871 0.81077 0.81488 0.95939 0.92309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.39 11.14 21.65 0.24 -54.15 16 2 C -0.04 -2.46 4.95 84.86 0.42 -2.04 16 3 Si 0.97 44.51 29.59 68.60 2.03 46.54 16 4 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 5 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 6 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 7 C -0.27 -15.10 9.65 84.03 0.81 -14.29 16 8 H 0.07 3.64 7.88 -2.91 -0.02 3.62 16 9 N -0.61 -31.48 3.05 -697.55 -2.13 -33.60 16 10 C 0.14 6.87 5.44 86.35 0.47 7.34 16 11 C 0.05 1.94 6.98 72.08 0.50 2.44 16 12 O -0.38 -13.95 9.22 -148.98 -1.37 -15.32 16 13 C 0.13 4.69 2.77 29.95 0.08 4.77 16 14 H 0.06 2.22 7.79 -2.39 -0.02 2.20 16 15 C -0.13 -3.87 5.07 -19.82 -0.10 -3.97 16 16 C -0.04 -0.95 9.35 22.26 0.21 -0.75 16 17 C -0.15 -2.96 10.03 22.32 0.22 -2.73 16 18 C 0.12 2.58 7.30 22.37 0.16 2.75 16 19 F -0.13 -2.66 17.27 44.97 0.78 -1.88 16 20 C -0.19 -4.13 10.01 22.36 0.22 -3.90 16 21 C 0.12 3.42 7.24 22.37 0.16 3.58 16 22 F -0.14 -4.24 16.57 44.97 0.74 -3.49 16 23 C 0.13 5.55 6.01 86.35 0.52 6.07 16 24 H 0.25 14.23 8.31 -92.71 -0.77 13.46 16 25 H 0.07 3.69 6.14 -2.39 -0.01 3.68 16 26 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 27 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 28 H 0.12 3.64 8.14 -2.39 -0.02 3.62 16 29 H 0.15 3.72 7.35 -2.91 -0.02 3.70 16 30 H 0.17 2.33 8.06 -2.91 -0.02 2.31 16 31 H 0.17 2.95 8.06 -2.91 -0.02 2.93 16 32 H 0.02 1.01 8.14 -2.38 -0.02 0.99 16 33 H 0.06 2.55 7.96 -2.39 -0.02 2.53 16 Total: -1.00 -62.53 287.06 5.11 -57.43 By element: Atomic # 1 Polarization: 4.08 SS G_CDS: 1.13 Total: 5.21 kcal Atomic # 6 Polarization: -4.42 SS G_CDS: 3.69 Total: -0.73 kcal Atomic # 7 Polarization: -85.87 SS G_CDS: -1.89 Total: -87.75 kcal Atomic # 8 Polarization: -13.95 SS G_CDS: -1.37 Total: -15.32 kcal Atomic # 9 Polarization: -6.89 SS G_CDS: 1.52 Total: -5.37 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Total: -62.53 5.11 -57.43 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187240721.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.728 kcal (2) G-P(sol) polarization free energy of solvation -62.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds