Wall clock time and date at job start Mon Mar 30 2020 02:04:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86800 * 119.99808 * 2 1 4 4 H 1.48500 * 109.47174 * 271.87445 * 3 2 1 5 5 H 1.48497 * 109.47106 * 31.87214 * 3 2 1 6 6 H 1.48499 * 109.47449 * 151.87334 * 3 2 1 7 7 C 1.38807 * 120.00285 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00359 * 340.03536 * 7 2 1 9 9 N 1.36937 * 120.00170 * 160.03482 * 7 2 1 10 10 C 1.47156 * 120.97992 * 333.72197 * 9 7 2 11 11 C 1.53294 * 108.38562 * 230.55660 * 10 9 7 12 12 O 1.42952 * 109.26742 * 307.72468 * 11 10 9 13 13 C 1.42968 * 114.16980 * 62.49646 * 12 11 10 14 14 H 1.09000 * 109.51223 * 57.45529 * 13 12 11 15 15 C 1.50703 * 109.51258 * 177.55154 * 13 12 11 16 16 C 1.38231 * 119.98573 * 24.62250 * 15 13 12 17 17 C 1.38185 * 120.05001 * 179.76570 * 16 15 13 18 18 C 1.38497 * 120.02358 * 0.50762 * 17 16 15 19 19 F 1.35097 * 120.01178 * 179.76498 * 18 17 16 20 20 C 1.38402 * 119.97494 * 359.75085 * 18 17 16 21 21 C 1.38442 * 119.94598 * 359.97438 * 20 18 17 22 22 F 1.35099 * 120.00669 * 180.02562 * 21 20 18 23 23 C 1.47149 * 120.98647 * 153.74855 * 9 7 2 24 24 H 0.97001 * 120.00735 * 0.02562 * 1 2 3 25 25 H 1.08997 * 109.68118 * 350.28499 * 10 9 7 26 26 H 1.09004 * 109.68072 * 110.79794 * 10 9 7 27 27 H 1.09004 * 109.51164 * 67.62753 * 11 10 9 28 28 H 1.08997 * 109.51465 * 187.76801 * 11 10 9 29 29 H 1.07998 * 119.97795 * 0.02562 * 16 15 13 30 30 H 1.07999 * 119.99060 * 180.26004 * 17 16 15 31 31 H 1.07994 * 120.02506 * 180.02562 * 20 18 17 32 32 H 1.09000 * 109.68258 * 9.72102 * 23 9 7 33 33 H 1.08998 * 109.68231 * 249.16692 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4579 2.0694 -1.3993 5 1 1.4679 2.6409 0.7393 6 1 3.5669 1.4292 0.6600 7 6 2.0102 -1.2021 0.0005 8 1 1.5190 -2.1092 0.3203 9 7 3.3179 -1.2379 -0.4044 10 6 3.8466 -0.2391 -1.3469 11 6 4.5654 -0.9780 -2.4815 12 8 5.5150 -1.8894 -1.9237 13 6 4.9356 -2.9161 -1.1149 14 1 4.2087 -3.4763 -1.7031 15 6 6.0176 -3.8475 -0.6323 16 6 7.3219 -3.4000 -0.5355 17 6 8.3142 -4.2514 -0.0886 18 6 8.0048 -5.5575 0.2528 19 9 8.9760 -6.3912 0.6852 20 6 6.7002 -6.0083 0.1512 21 6 5.7059 -5.1526 -0.2913 22 9 4.4319 -5.5911 -0.3905 23 6 4.2358 -2.2765 0.0897 24 1 -0.4851 0.8400 -0.0004 25 1 3.0260 0.3510 -1.7550 26 1 4.5491 0.4161 -0.8318 27 1 3.8370 -1.5303 -3.0752 28 1 5.0816 -0.2573 -3.1157 29 1 7.5648 -2.3828 -0.8053 30 1 9.3322 -3.8995 -0.0093 31 1 6.4579 -7.0264 0.4175 32 1 3.6730 -3.0356 0.6329 33 1 4.9779 -1.8269 0.7493 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187240743.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:03 Heat of formation + Delta-G solvation = -95.272307 kcal Electronic energy + Delta-G solvation = -20608.670610 eV Core-core repulsion = 17077.770430 eV Total energy + Delta-G solvation = -3530.900180 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.097 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -50.09315 -50.01322 -40.80947 -39.33603 -36.51637 -33.88761 -33.55956 -31.84686 -30.47797 -28.72501 -25.70115 -24.98959 -24.06964 -22.95096 -21.65496 -19.30858 -18.98801 -18.40337 -17.70622 -17.18438 -17.03859 -16.82393 -16.55742 -16.37327 -16.02808 -15.83347 -15.49191 -15.40772 -15.19971 -14.62338 -14.20759 -13.82275 -13.68729 -13.44712 -13.11116 -12.87965 -12.50721 -12.43943 -12.24648 -12.10965 -11.60377 -11.44919 -11.22612 -10.61670 -10.08863 -9.72599 -8.98960 -8.21425 -5.56948 -0.15082 0.00181 1.26981 1.40637 1.49670 2.28273 2.37151 2.55829 2.82791 2.94055 3.15806 3.37609 3.61217 3.72583 3.89176 3.97967 4.06957 4.21470 4.27198 4.35631 4.43474 4.61482 4.71516 4.78241 4.83518 4.86976 4.91550 5.01657 5.09816 5.23740 5.71406 5.75024 6.04861 6.10375 6.77731 7.50017 7.89426 8.98053 Molecular weight = 269.10amu Principal moments of inertia in cm(-1) A = 0.032613 B = 0.005210 C = 0.004883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.336765 B = 5372.787532 C = 5733.343524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.032 4.032 3 Si 0.951 3.049 4 H -0.264 1.264 5 H -0.309 1.309 6 H -0.263 1.263 7 C -0.258 4.258 8 H 0.050 0.950 9 N -0.623 5.623 10 C 0.080 3.920 11 C 0.057 3.943 12 O -0.374 6.374 13 C 0.127 3.873 14 H 0.056 0.944 15 C -0.130 4.130 16 C -0.035 4.035 17 C -0.150 4.150 18 C 0.124 3.876 19 F -0.132 7.132 20 C -0.188 4.188 21 C 0.122 3.878 22 F -0.140 7.140 23 C 0.128 3.872 24 H 0.264 0.736 25 H 0.067 0.933 26 H 0.045 0.955 27 H 0.048 0.952 28 H 0.132 0.868 29 H 0.160 0.840 30 H 0.173 0.827 31 H 0.165 0.835 32 H 0.059 0.941 33 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.103 -7.650 -2.853 20.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.227 4.227 3 Si 0.779 3.221 4 H -0.190 1.190 5 H -0.238 1.238 6 H -0.188 1.188 7 C -0.387 4.387 8 H 0.068 0.932 9 N -0.348 5.348 10 C -0.045 4.045 11 C -0.021 4.021 12 O -0.293 6.293 13 C 0.068 3.932 14 H 0.074 0.926 15 C -0.132 4.132 16 C -0.053 4.053 17 C -0.168 4.168 18 C 0.105 3.895 19 F -0.111 7.111 20 C -0.207 4.207 21 C 0.102 3.898 22 F -0.118 7.118 23 C 0.003 3.997 24 H 0.073 0.927 25 H 0.085 0.915 26 H 0.063 0.937 27 H 0.066 0.934 28 H 0.150 0.850 29 H 0.178 0.822 30 H 0.191 0.809 31 H 0.182 0.818 32 H 0.078 0.922 33 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 19.137 -7.608 -2.859 20.791 hybrid contribution -0.985 0.440 0.346 1.133 sum 18.151 -7.168 -2.513 19.677 Atomic orbital electron populations 1.69956 1.07477 1.27527 1.55068 1.25897 0.95876 1.01149 0.99755 0.85875 0.78418 0.79569 0.78214 1.18978 1.23806 1.18751 1.18820 0.85929 0.93813 1.40179 0.93186 1.44479 1.07573 1.32395 1.50374 1.22202 0.97650 0.92669 0.91970 1.23102 0.92241 0.92393 0.94362 1.87750 1.33655 1.41334 1.66544 1.20974 0.92023 0.87779 0.92458 0.92596 1.19735 0.96532 0.92482 1.04429 1.20907 0.89430 1.01126 0.93839 1.21489 1.02494 0.91350 1.01497 1.17376 0.84632 0.88753 0.98746 1.91530 1.61315 1.71126 1.87085 1.21071 0.91200 1.02355 1.06095 1.17228 0.79155 0.91956 1.01424 1.91524 1.36765 1.89831 1.93722 1.21624 0.92393 0.91376 0.94318 0.92679 0.91506 0.93708 0.93384 0.85041 0.82240 0.80949 0.81763 0.92226 0.93827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.80 13.97 21.65 0.30 -59.50 16 2 C -0.03 -1.84 5.26 84.86 0.45 -1.39 16 3 Si 0.95 45.53 24.28 68.60 1.67 47.20 16 4 H -0.26 -11.53 6.58 99.48 0.65 -10.87 16 5 H -0.31 -15.10 7.11 99.48 0.71 -14.39 16 6 H -0.26 -12.13 6.54 99.48 0.65 -11.48 16 7 C -0.26 -14.83 10.10 84.03 0.85 -13.98 16 8 H 0.05 3.17 8.06 -2.91 -0.02 3.15 16 9 N -0.62 -29.66 2.83 -697.55 -1.98 -31.63 16 10 C 0.08 3.26 4.39 86.35 0.38 3.64 16 11 C 0.06 1.83 6.98 72.08 0.50 2.34 16 12 O -0.37 -11.96 9.21 -148.98 -1.37 -13.34 16 13 C 0.13 4.29 2.77 29.95 0.08 4.38 16 14 H 0.06 2.08 7.79 -2.39 -0.02 2.06 16 15 C -0.13 -3.59 5.08 -19.82 -0.10 -3.69 16 16 C -0.04 -0.76 9.35 22.26 0.21 -0.55 16 17 C -0.15 -2.63 10.03 22.32 0.22 -2.40 16 18 C 0.12 2.43 7.30 22.37 0.16 2.60 16 19 F -0.13 -2.55 17.27 44.97 0.78 -1.77 16 20 C -0.19 -4.03 10.01 22.36 0.22 -3.80 16 21 C 0.12 3.26 7.24 22.37 0.16 3.42 16 22 F -0.14 -4.32 16.57 44.97 0.75 -3.57 16 23 C 0.13 5.15 6.01 86.35 0.52 5.67 16 24 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 25 H 0.07 2.95 4.61 -2.39 -0.01 2.93 16 26 H 0.05 1.77 6.87 -2.39 -0.02 1.75 16 27 H 0.05 1.62 8.14 -2.38 -0.02 1.60 16 28 H 0.13 3.21 8.14 -2.39 -0.02 3.19 16 29 H 0.16 3.19 7.34 -2.91 -0.02 3.17 16 30 H 0.17 1.96 8.06 -2.91 -0.02 1.94 16 31 H 0.16 2.87 8.06 -2.91 -0.02 2.85 16 32 H 0.06 2.50 7.96 -2.39 -0.02 2.49 16 33 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -66.32 280.33 4.83 -61.50 By element: Atomic # 1 Polarization: 3.86 SS G_CDS: 1.03 Total: 4.89 kcal Atomic # 6 Polarization: -7.44 SS G_CDS: 3.66 Total: -3.78 kcal Atomic # 7 Polarization: -89.46 SS G_CDS: -1.67 Total: -91.13 kcal Atomic # 8 Polarization: -11.96 SS G_CDS: -1.37 Total: -13.34 kcal Atomic # 9 Polarization: -6.86 SS G_CDS: 1.52 Total: -5.34 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 1.67 Total: 47.20 kcal Total: -66.32 4.83 -61.50 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187240743.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.774 kcal (2) G-P(sol) polarization free energy of solvation -66.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds