Wall clock time and date at job start Mon Mar 30 2020 02:00:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 O 1.42900 * 112.94035 * 50.33270 * 9 7 2 11 11 C 1.53944 * 113.73527 * 278.76760 * 9 7 2 12 12 N 1.48189 * 86.09920 * 221.95783 * 11 9 7 13 13 C 1.46904 * 111.06803 * 137.52150 * 12 11 9 14 14 C 1.50699 * 109.47392 * 90.56563 * 13 12 11 15 15 C 1.38426 * 120.02316 * 269.72795 * 14 13 12 16 16 F 1.35100 * 120.00987 * 359.97199 * 15 14 13 17 17 C 1.38475 * 119.97095 * 179.70129 * 15 14 13 18 18 C 1.38207 * 120.02255 * 0.59040 * 17 15 14 19 19 C 1.38202 * 120.05562 * 359.67945 * 18 17 15 20 20 C 1.38419 * 120.02625 * 89.99578 * 14 13 12 21 21 F 1.35101 * 120.01230 * 359.97438 * 20 14 13 22 22 C 1.47960 * 90.80220 * 24.60019 * 12 11 9 23 23 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 24 24 H 0.96699 * 113.99865 * 309.67049 * 10 9 7 25 25 H 1.08996 * 113.75681 * 336.24186 * 11 9 7 26 26 H 1.08999 * 113.75828 * 107.60395 * 11 9 7 27 27 H 1.09003 * 109.46971 * 210.56350 * 13 12 11 28 28 H 1.09005 * 109.47286 * 330.56060 * 13 12 11 29 29 H 1.07998 * 119.98492 * 180.32438 * 17 15 14 30 30 H 1.08006 * 119.97005 * 179.70326 * 18 17 15 31 31 H 1.08006 * 119.99048 * 179.97438 * 19 18 17 32 32 H 1.09000 * 113.75922 * 221.08463 * 22 12 11 33 33 H 1.08996 * 113.85941 * 89.73133 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 8 0.2447 -2.5612 -1.0132 11 6 0.7557 -2.9287 1.3923 12 7 1.1893 -4.2943 1.0139 13 6 1.8776 -4.9578 2.1293 14 6 0.8741 -5.7165 2.9590 15 6 0.2474 -5.0962 4.0261 16 9 0.5355 -3.8105 4.3245 17 6 -0.6791 -5.7924 4.7840 18 6 -0.9691 -7.1097 4.4829 19 6 -0.3398 -7.7318 3.4212 20 6 0.5825 -7.0357 2.6581 21 9 1.1971 -7.6438 1.6200 22 6 2.1610 -3.7400 0.0456 23 1 -0.4850 0.8401 0.0004 24 1 -0.3473 -1.7968 -1.0267 25 1 1.3280 -2.4980 2.2139 26 1 -0.3216 -2.8297 1.5251 27 1 2.6219 -5.6505 1.7363 28 1 2.3700 -4.2089 2.7496 29 1 -1.1721 -5.3071 5.6133 30 1 -1.6883 -7.6534 5.0775 31 1 -0.5669 -8.7614 3.1871 32 1 2.2043 -4.2880 -0.8956 33 1 3.1458 -3.5468 0.4708 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000191912877.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:56 Heat of formation + Delta-G solvation = -76.520206 kcal Electronic energy + Delta-G solvation = -20669.539997 eV Core-core repulsion = 17139.452969 eV Total energy + Delta-G solvation = -3530.087028 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.097 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -48.82989 -48.80581 -39.24457 -38.39505 -34.46322 -32.15293 -31.94896 -30.24230 -28.05130 -25.76132 -25.07450 -23.03514 -22.75303 -21.01114 -18.62425 -18.04275 -17.27282 -17.13070 -16.03036 -15.84658 -15.46293 -15.11726 -15.06947 -14.82479 -14.29787 -14.13689 -13.95891 -13.83321 -12.69274 -12.65865 -12.14735 -12.08231 -11.88497 -11.74393 -11.53802 -11.28484 -10.99328 -10.74487 -10.59739 -10.33478 -10.00669 -9.38629 -8.82662 -8.70013 -8.60361 -8.18854 -7.81724 -6.24264 -4.34174 1.01873 1.03875 3.20744 3.28154 3.31629 3.38215 4.01143 4.27154 4.47737 4.57524 4.70887 4.77930 4.94660 5.05835 5.17106 5.50158 5.68228 5.90739 5.92635 5.97877 5.99119 6.05425 6.13207 6.15498 6.32398 6.45319 6.68974 6.81577 7.06917 7.16314 7.36810 7.77323 7.93394 8.02096 8.67487 9.35750 9.63660 10.81801 Molecular weight = 269.10amu Principal moments of inertia in cm(-1) A = 0.028834 B = 0.005421 C = 0.004978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.834196 B = 5163.538959 C = 5623.897081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.071 3.929 3 Si 0.903 3.097 4 H -0.279 1.279 5 H -0.272 1.272 6 H -0.284 1.284 7 C -0.538 4.538 8 H 0.065 0.935 9 C 0.245 3.755 10 O -0.571 6.571 11 C -0.009 4.009 12 N -0.474 5.474 13 C 0.054 3.946 14 C -0.132 4.132 15 C 0.136 3.864 16 F -0.125 7.125 17 C -0.168 4.168 18 C -0.070 4.070 19 C -0.170 4.170 20 C 0.143 3.857 21 F -0.128 7.128 22 C 0.010 3.990 23 H 0.270 0.730 24 H 0.388 0.612 25 H 0.063 0.937 26 H 0.070 0.930 27 H 0.080 0.920 28 H 0.057 0.943 29 H 0.139 0.861 30 H 0.139 0.861 31 H 0.139 0.861 32 H 0.077 0.923 33 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.663 -11.811 9.472 15.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.131 4.131 3 Si 0.730 3.270 4 H -0.205 1.205 5 H -0.197 1.197 6 H -0.209 1.209 7 C -0.576 4.576 8 H 0.083 0.917 9 C 0.203 3.797 10 O -0.382 6.382 11 C -0.138 4.138 12 N -0.196 5.196 13 C -0.074 4.074 14 C -0.134 4.134 15 C 0.116 3.884 16 F -0.103 7.103 17 C -0.187 4.187 18 C -0.089 4.089 19 C -0.189 4.189 20 C 0.122 3.878 21 F -0.106 7.106 22 C -0.118 4.118 23 H 0.081 0.919 24 H 0.242 0.758 25 H 0.081 0.919 26 H 0.089 0.911 27 H 0.098 0.902 28 H 0.075 0.925 29 H 0.157 0.843 30 H 0.157 0.843 31 H 0.157 0.843 32 H 0.095 0.905 33 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.962 -12.708 9.089 15.653 hybrid contribution 0.886 2.054 0.509 2.294 sum -0.076 -10.653 9.597 14.339 Atomic orbital electron populations 1.69432 1.06095 1.27772 1.50405 1.25057 0.94978 0.99620 0.93418 0.86422 0.79870 0.82461 0.78250 1.20453 1.19668 1.20912 1.21632 0.93657 0.90666 1.51678 0.91658 1.19742 0.85385 0.90742 0.83826 1.86043 1.47016 1.49535 1.55635 1.24822 1.00757 0.86592 1.01615 1.68649 1.25550 1.17225 1.08221 1.21487 0.93763 0.98176 0.94007 1.19911 1.02270 0.93884 0.97355 1.17285 0.96589 0.79428 0.95063 1.91554 1.92031 1.34436 1.92324 1.21159 0.99807 0.95685 1.02063 1.20744 0.98389 0.93642 0.96102 1.21140 0.98750 1.01447 0.97540 1.17166 0.94140 0.90203 0.86243 1.91515 1.81031 1.82579 1.55465 1.24129 0.94858 0.96685 0.96112 0.91942 0.75821 0.91875 0.91149 0.90169 0.92480 0.84287 0.84276 0.84326 0.90473 0.91592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.40 11.20 55.43 0.62 -23.78 16 2 C 0.07 1.91 5.40 -17.82 -0.10 1.81 16 3 Si 0.90 20.62 29.54 -169.99 -5.02 15.60 16 4 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 6 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.54 -14.56 8.61 -34.44 -0.30 -14.86 16 8 H 0.07 1.73 7.81 -52.49 -0.41 1.32 16 9 C 0.24 6.34 1.40 -90.83 -0.13 6.21 16 10 O -0.57 -15.79 13.48 -35.23 -0.48 -16.27 16 11 C -0.01 -0.21 6.89 -2.63 -0.02 -0.23 16 12 N -0.47 -10.35 6.14 -239.46 -1.47 -11.82 16 13 C 0.05 0.99 4.58 -4.97 -0.02 0.96 16 14 C -0.13 -2.18 5.45 -104.49 -0.57 -2.75 16 15 C 0.14 2.12 7.24 -39.42 -0.29 1.84 16 16 F -0.13 -2.17 15.77 2.25 0.04 -2.13 16 17 C -0.17 -2.03 10.03 -39.51 -0.40 -2.42 16 18 C -0.07 -0.72 10.04 -39.61 -0.40 -1.12 16 19 C -0.17 -1.96 10.02 -39.51 -0.40 -2.36 16 20 C 0.14 2.12 7.24 -39.43 -0.29 1.84 16 21 F -0.13 -2.02 16.48 2.25 0.04 -1.98 16 22 C 0.01 0.24 7.34 -2.76 -0.02 0.22 16 23 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 24 H 0.39 10.84 6.60 45.56 0.30 11.14 16 25 H 0.06 1.52 7.21 -51.93 -0.37 1.14 16 26 H 0.07 1.79 8.14 -51.93 -0.42 1.37 16 27 H 0.08 1.36 7.58 -51.93 -0.39 0.97 16 28 H 0.06 1.04 6.88 -51.93 -0.36 0.69 16 29 H 0.14 1.35 8.06 -52.49 -0.42 0.92 16 30 H 0.14 0.92 8.06 -52.48 -0.42 0.50 16 31 H 0.14 1.23 8.06 -52.48 -0.42 0.81 16 32 H 0.08 1.71 8.14 -51.93 -0.42 1.29 16 33 H 0.07 1.37 7.88 -51.93 -0.41 0.96 16 LS Contribution 290.89 15.07 4.38 4.38 Total: -1.00 -29.12 290.89 -7.69 -36.82 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: -2.89 Total: 10.05 kcal Atomic # 6 Polarization: -7.95 SS G_CDS: -2.91 Total: -10.86 kcal Atomic # 7 Polarization: -34.76 SS G_CDS: -0.85 Total: -35.61 kcal Atomic # 8 Polarization: -15.79 SS G_CDS: -0.48 Total: -16.27 kcal Atomic # 9 Polarization: -4.18 SS G_CDS: 0.07 Total: -4.11 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -29.12 -7.69 -36.82 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191912877.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.703 kcal (2) G-P(sol) polarization free energy of solvation -29.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds