Wall clock time and date at job start Mon Mar 30 2020 00:40:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35781 * 117.00205 * 2 1 4 4 C 1.38017 * 123.47120 * 0.02562 * 3 2 1 5 5 C 1.33617 * 115.08734 * 179.72573 * 4 3 2 6 6 C 1.50696 * 124.42916 * 180.24786 * 5 4 3 7 7 S 1.70586 * 111.14433 * 0.25253 * 5 4 3 8 8 C 1.37275 * 123.46977 * 180.21572 * 3 2 1 9 9 C 1.41722 * 125.47910 * 359.97438 * 8 3 2 10 10 O 1.21775 * 119.99815 * 0.27064 * 9 8 3 11 11 N 1.34768 * 120.00441 * 180.27408 * 9 8 3 12 12 C 1.46495 * 120.00334 * 179.97438 * 11 9 8 13 13 C 1.53004 * 109.47415 * 179.97438 * 12 11 9 14 14 C 1.50697 * 109.47239 * 180.02562 * 13 12 11 15 15 H 1.07996 * 120.00326 * 359.97438 * 14 13 12 16 16 C 1.37882 * 120.00090 * 180.02562 * 14 13 12 17 17 N 1.31518 * 119.99811 * 0.02562 * 16 14 13 18 18 Si 1.86793 * 120.00195 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.46877 * 60.00153 * 18 16 14 20 20 H 1.48497 * 109.47020 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.47338 * 300.00097 * 18 16 14 22 22 H 1.08993 * 109.47358 * 179.97438 * 1 2 3 23 23 H 1.08995 * 109.46862 * 300.00158 * 1 2 3 24 24 H 1.09002 * 109.46643 * 59.99734 * 1 2 3 25 25 H 1.08002 * 122.46033 * 0.02562 * 4 3 2 26 26 H 1.08998 * 109.47384 * 90.00390 * 6 5 4 27 27 H 1.09006 * 109.46826 * 210.00295 * 6 5 4 28 28 H 1.08995 * 109.47104 * 330.00012 * 6 5 4 29 29 H 0.97005 * 119.99593 * 0.02562 * 11 9 8 30 30 H 1.08997 * 109.47615 * 300.00350 * 12 11 9 31 31 H 1.09000 * 109.47181 * 60.00228 * 12 11 9 32 32 H 1.09005 * 109.47014 * 300.00526 * 13 12 11 33 33 H 1.09000 * 109.46611 * 60.00061 * 13 12 11 34 34 H 0.96993 * 120.00312 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0455 1.2098 0.0000 4 6 1.3653 2.4107 0.0005 5 6 2.1391 3.5000 0.0062 6 6 1.6191 4.9144 0.0133 7 16 3.7925 3.0804 0.0044 8 6 3.4095 1.3644 -0.0043 9 6 4.3568 0.3104 -0.0088 10 8 3.9794 -0.8474 -0.0140 11 7 5.6753 0.5892 -0.0072 12 6 6.6546 -0.5004 -0.0112 13 6 8.0684 0.0844 -0.0090 14 6 9.0757 -1.0364 -0.0138 15 1 8.7410 -2.0632 -0.0176 16 6 10.4246 -0.7511 -0.0123 17 7 10.8323 0.4993 -0.0062 18 14 11.6732 -2.1405 -0.0176 19 1 11.4837 -2.9716 -1.2335 20 1 13.0454 -1.5728 -0.0143 21 1 11.4831 -2.9815 1.1915 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 0.2867 2.4660 0.0014 26 1 1.4935 5.2503 1.0426 27 1 2.3292 5.5651 -0.4972 28 1 0.6585 4.9510 -0.5006 29 1 5.9760 1.5115 -0.0026 30 1 6.5150 -1.1177 0.8761 31 1 6.5156 -1.1105 -0.9038 32 1 8.2077 0.7015 -0.8967 33 1 8.2077 0.6948 0.8833 34 1 11.7812 0.7001 -0.0048 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273069976.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:40:10 Heat of formation + Delta-G solvation = -76.859213 kcal Electronic energy + Delta-G solvation = -17645.012902 eV Core-core repulsion = 14668.751560 eV Total energy + Delta-G solvation = -2976.261342 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.087 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.36113 -40.12584 -37.38599 -36.56443 -34.83061 -33.03073 -31.54039 -28.96406 -28.08634 -26.37916 -24.18234 -23.21382 -22.30911 -20.41028 -19.46069 -18.50747 -17.97056 -17.23955 -17.03102 -16.48587 -16.32137 -16.19072 -15.41015 -14.99759 -14.87552 -14.59230 -14.50250 -14.27364 -13.53795 -13.24584 -13.13773 -13.12034 -12.90274 -12.54144 -12.41229 -12.25067 -11.87672 -11.80327 -11.66773 -11.49795 -10.98558 -10.60391 -10.15143 -9.68677 -9.08136 -8.23861 -6.34904 -0.55620 0.38676 0.77567 1.28818 1.41726 1.44764 1.52729 2.24886 2.28397 2.47524 2.49453 3.10363 3.57751 3.99846 4.17009 4.23189 4.35906 4.37502 4.45903 4.49140 4.64260 4.71281 4.75549 4.81649 4.91878 5.09054 5.23612 5.24791 5.46732 5.55128 5.77102 6.15018 6.26628 6.56969 6.77139 7.22841 7.34101 8.88128 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.030696 B = 0.003873 C = 0.003452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.955718 B = 7227.313427 C = 8108.213911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.310 6.310 3 C 0.193 3.807 4 C -0.229 4.229 5 C -0.139 4.139 6 C -0.090 4.090 7 S 0.244 5.756 8 C -0.381 4.381 9 C 0.584 3.416 10 O -0.582 6.582 11 N -0.722 5.722 12 C 0.143 3.857 13 C 0.024 3.976 14 C -0.550 4.550 15 H 0.059 0.941 16 C 0.008 3.992 17 N -0.926 5.926 18 Si 0.968 3.032 19 H -0.268 1.268 20 H -0.278 1.278 21 H -0.269 1.269 22 H 0.111 0.889 23 H 0.075 0.925 24 H 0.075 0.925 25 H 0.182 0.818 26 H 0.099 0.901 27 H 0.086 0.914 28 H 0.102 0.898 29 H 0.402 0.598 30 H 0.046 0.954 31 H 0.046 0.954 32 H 0.009 0.991 33 H 0.009 0.991 34 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.898 11.649 0.090 25.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.222 6.222 3 C 0.131 3.869 4 C -0.261 4.261 5 C -0.260 4.260 6 C -0.148 4.148 7 S 0.509 5.491 8 C -0.500 4.500 9 C 0.375 3.625 10 O -0.465 6.465 11 N -0.373 5.373 12 C 0.020 3.980 13 C -0.013 4.013 14 C -0.588 4.588 15 H 0.077 0.923 16 C -0.191 4.191 17 N -0.565 5.565 18 Si 0.792 3.208 19 H -0.193 1.193 20 H -0.203 1.203 21 H -0.193 1.193 22 H 0.129 0.871 23 H 0.094 0.906 24 H 0.094 0.906 25 H 0.199 0.801 26 H 0.118 0.882 27 H 0.105 0.895 28 H 0.120 0.880 29 H 0.237 0.763 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.027 0.973 33 H 0.027 0.973 34 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -21.563 11.539 0.090 24.457 hybrid contribution -0.427 -1.236 0.002 1.308 sum -21.989 10.303 0.091 24.284 Atomic orbital electron populations 1.23504 0.75792 1.05702 1.03080 1.86306 1.23803 1.25353 1.86738 1.18653 0.90066 0.86413 0.91759 1.20124 1.03330 0.89074 1.13523 1.24547 0.97975 1.02266 1.01219 1.20688 1.02955 0.86255 1.04951 1.83023 1.04152 0.92693 1.69215 1.22704 0.95634 0.99562 1.32126 1.16080 0.82117 0.88111 0.76205 1.90785 1.80347 1.22309 1.53052 1.46036 1.05453 1.10606 1.75224 1.21238 0.88170 0.88839 0.99799 1.19133 0.89626 0.96223 0.96367 1.21420 0.91957 0.93470 1.51964 0.92319 1.25886 1.00565 0.98375 0.94236 1.70053 1.16128 1.19573 1.50755 0.85465 0.77405 0.78841 0.79131 1.19335 1.20333 1.19350 0.87056 0.90630 0.90638 0.80081 0.88228 0.89538 0.87951 0.76289 0.93563 0.93566 0.97279 0.97280 0.92436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.22 9.94 113.37 1.13 1.35 16 2 O -0.31 -9.51 9.36 -74.35 -0.70 -10.21 16 3 C 0.19 5.57 6.70 21.99 0.15 5.72 16 4 C -0.23 -4.30 9.02 21.17 0.19 -4.11 16 5 C -0.14 -2.31 6.27 24.64 0.15 -2.16 16 6 C -0.09 -0.69 10.31 71.23 0.73 0.04 16 7 S 0.24 5.56 21.94 -56.49 -1.24 4.32 16 8 C -0.38 -12.68 6.28 22.90 0.14 -12.54 16 9 C 0.58 24.74 7.59 85.10 0.65 25.38 16 10 O -0.58 -29.12 15.84 12.16 0.19 -28.92 16 11 N -0.72 -30.08 5.54 -472.04 -2.62 -32.70 16 12 C 0.14 6.87 5.61 86.38 0.48 7.36 16 13 C 0.02 1.29 5.09 29.85 0.15 1.44 16 14 C -0.55 -32.02 9.11 25.60 0.23 -31.78 16 15 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 16 C 0.01 0.48 5.46 84.66 0.46 0.94 16 17 N -0.93 -55.42 13.29 21.45 0.28 -55.14 16 18 Si 0.97 44.66 29.54 68.60 2.03 46.69 16 19 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 20 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 21 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 22 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 23 H 0.08 0.91 7.88 -2.39 -0.02 0.89 16 24 H 0.08 0.91 7.88 -2.39 -0.02 0.89 16 25 H 0.18 2.05 6.99 -2.91 -0.02 2.03 16 26 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 27 H 0.09 0.55 8.14 -2.38 -0.02 0.53 16 28 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16 29 H 0.40 14.77 7.44 -92.70 -0.69 14.08 16 30 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 31 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 32 H 0.01 0.50 8.14 -2.38 -0.02 0.48 16 33 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 34 H 0.27 14.96 8.31 -92.71 -0.77 14.19 16 Total: -1.00 -77.55 309.59 2.85 -74.70 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: 0.42 Total: 9.63 kcal Atomic # 6 Polarization: -12.84 SS G_CDS: 4.48 Total: -8.37 kcal Atomic # 7 Polarization: -85.50 SS G_CDS: -2.33 Total: -87.83 kcal Atomic # 8 Polarization: -38.63 SS G_CDS: -0.50 Total: -39.13 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Atomic # 16 Polarization: 5.56 SS G_CDS: -1.24 Total: 4.32 kcal Total: -77.55 2.85 -74.70 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273069976.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.163 kcal (2) G-P(sol) polarization free energy of solvation -77.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds