Wall clock time and date at job start Mon Mar 30 2020 01:59:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 119.99551 * 2 1 4 4 H 1.48501 * 109.47483 * 269.99824 * 3 2 1 5 5 H 1.48502 * 109.47495 * 30.00338 * 3 2 1 6 6 H 1.48502 * 109.47376 * 149.99955 * 3 2 1 7 7 C 1.37871 * 120.00506 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00092 * 0.02562 * 7 2 1 9 9 C 1.50703 * 120.00445 * 180.02562 * 7 2 1 10 10 C 1.52990 * 109.47398 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.47398 * 180.02562 * 10 9 7 12 12 O 1.21283 * 119.99488 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00290 * 180.02562 * 11 10 9 14 14 C 1.46498 * 119.99828 * 180.27728 * 13 11 10 15 15 C 1.50700 * 109.46769 * 179.72341 * 14 13 11 16 16 C 1.38258 * 119.96346 * 269.71469 * 15 14 13 17 17 C 1.38213 * 120.07274 * 179.76659 * 16 15 14 18 18 C 1.38418 * 119.99722 * 0.51849 * 17 16 15 19 19 F 1.35096 * 120.03553 * 179.72266 * 18 17 16 20 20 C 1.38647 * 119.92654 * 359.74374 * 18 17 16 21 21 F 1.35102 * 120.03601 * 180.02562 * 20 18 17 22 22 C 1.38207 * 119.96526 * 90.00218 * 15 14 13 23 23 H 0.97000 * 120.00920 * 359.97438 * 1 2 3 24 24 H 1.08998 * 109.46954 * 59.99756 * 9 7 2 25 25 H 1.09011 * 109.46800 * 300.00341 * 9 7 2 26 26 H 1.08998 * 109.47508 * 59.99800 * 10 9 7 27 27 H 1.09002 * 109.47337 * 300.00085 * 10 9 7 28 28 H 0.97001 * 119.99727 * 359.97438 * 13 11 10 29 29 H 1.09004 * 109.46963 * 299.72135 * 14 13 11 30 30 H 1.08994 * 109.47567 * 59.72287 * 14 13 11 31 31 H 1.08005 * 119.96332 * 0.03250 * 16 15 14 32 32 H 1.07999 * 120.00045 * 180.25862 * 17 16 15 33 33 H 1.08000 * 120.00503 * 359.95289 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4404 0.7000 7 6 2.0045 -1.1939 -0.0005 8 1 1.4646 -2.1293 -0.0014 9 6 3.5116 -1.1939 0.0000 10 6 4.0216 -2.6363 -0.0014 11 6 5.5287 -2.6363 -0.0001 12 8 6.1350 -1.5859 0.0012 13 7 6.2026 -3.8034 -0.0016 14 6 7.6676 -3.8033 0.0057 15 6 8.1699 -5.2241 0.0092 16 6 8.3997 -5.8723 1.2086 17 6 8.8559 -7.1770 1.2145 18 6 9.0933 -7.8325 0.0187 19 9 9.5445 -9.1059 0.0235 20 6 8.8680 -7.1806 -1.1841 21 9 9.0985 -7.8184 -2.3525 22 6 8.4061 -5.8758 -1.1865 23 1 -0.4851 0.8400 0.0004 24 1 3.8745 -0.6806 0.8905 25 1 3.8752 -0.6794 -0.8895 26 1 3.6587 -3.1492 -0.8920 27 1 3.6580 -3.1512 0.8879 28 1 5.7176 -4.6435 -0.0031 29 1 8.0353 -3.2901 -0.8828 30 1 8.0265 -3.2889 0.8971 31 1 8.2185 -5.3600 2.1420 32 1 9.0310 -7.6836 2.1520 33 1 8.2299 -5.3671 -2.1228 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292387513.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:06 Heat of formation + Delta-G solvation = -114.811476 kcal Electronic energy + Delta-G solvation = -19020.217470 eV Core-core repulsion = 15488.470008 eV Total energy + Delta-G solvation = -3531.747462 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.097 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.84648 -48.92128 -39.95991 -38.93220 -34.88184 -33.50554 -31.75458 -31.31147 -30.87721 -27.10585 -25.30374 -23.71202 -22.20987 -21.22402 -19.81177 -18.38037 -17.61521 -17.56650 -17.06444 -16.70425 -15.99299 -15.86883 -15.32793 -15.27918 -14.89948 -14.63469 -14.28552 -14.08452 -13.75224 -13.26207 -13.00660 -12.60830 -12.53115 -12.26772 -12.12398 -11.68685 -11.43822 -10.97926 -10.19626 -10.07651 -9.82329 -9.63639 -9.41513 -9.20763 -9.02076 -9.00890 -8.52359 -6.04461 -4.03524 0.36677 0.51830 2.76431 3.04027 3.31948 3.36705 3.43407 3.53731 3.55714 3.89018 4.04507 4.16140 4.49402 4.51005 4.63023 5.07746 5.18149 5.29327 5.30967 5.37559 5.45086 5.51993 5.63893 5.91800 6.04256 6.06328 6.25821 6.46092 6.65916 7.33645 7.40825 7.65984 7.77156 8.46945 8.57507 8.98445 9.58414 11.08358 Molecular weight = 269.10amu Principal moments of inertia in cm(-1) A = 0.041847 B = 0.002998 C = 0.002970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.942872 B = 9337.325828 C = 9425.606642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.069 3.931 3 Si 0.878 3.122 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.261 1.261 7 C -0.526 4.526 8 H 0.073 0.927 9 C 0.001 3.999 10 C -0.122 4.122 11 C 0.511 3.489 12 O -0.538 6.538 13 N -0.740 5.740 14 C 0.159 3.841 15 C -0.083 4.083 16 C -0.081 4.081 17 C -0.126 4.126 18 C 0.071 3.929 19 F -0.129 7.129 20 C 0.066 3.934 21 F -0.128 7.128 22 C -0.107 4.107 23 H 0.263 0.737 24 H 0.024 0.976 25 H 0.019 0.981 26 H 0.086 0.914 27 H 0.087 0.913 28 H 0.401 0.599 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.145 0.855 32 H 0.149 0.851 33 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.689 -16.082 1.275 25.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.133 4.133 3 Si 0.705 3.295 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.185 1.185 7 C -0.564 4.564 8 H 0.091 0.909 9 C -0.037 4.037 10 C -0.162 4.162 11 C 0.300 3.700 12 O -0.414 6.414 13 N -0.395 5.395 14 C 0.036 3.964 15 C -0.084 4.084 16 C -0.100 4.100 17 C -0.145 4.145 18 C 0.050 3.950 19 F -0.107 7.107 20 C 0.046 3.954 21 F -0.106 7.106 22 C -0.127 4.127 23 H 0.073 0.927 24 H 0.042 0.958 25 H 0.037 0.963 26 H 0.105 0.895 27 H 0.105 0.895 28 H 0.235 0.765 29 H 0.096 0.904 30 H 0.098 0.902 31 H 0.163 0.837 32 H 0.166 0.834 33 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 20.000 -15.240 1.226 25.175 hybrid contribution 0.301 -0.038 -0.282 0.414 sum 20.301 -15.279 0.944 25.426 Atomic orbital electron populations 1.69906 1.06313 1.27007 1.51006 1.24975 0.94708 0.99256 0.94319 0.86791 0.80600 0.83375 0.78749 1.20240 1.21452 1.18521 1.21111 0.89277 0.94572 1.51411 0.90935 1.19373 0.96426 0.90169 0.97682 1.21678 0.87694 1.03344 1.03455 1.21595 0.91615 0.82595 0.74190 1.90666 1.70760 1.31398 1.48588 1.46234 1.05595 1.09586 1.78050 1.20127 0.81766 0.90803 1.03740 1.19892 0.99583 0.96645 0.92273 1.21118 0.96794 0.93409 0.98650 1.21127 1.00999 0.95562 0.96796 1.17772 1.02926 0.80707 0.93581 1.91541 1.86543 1.35362 1.97267 1.17668 1.04877 0.92302 0.80525 1.91550 1.92334 1.81515 1.45210 1.21092 0.99176 0.92124 1.00270 0.92693 0.95799 0.96265 0.89527 0.89498 0.76507 0.90350 0.90159 0.83735 0.83367 0.83258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.81 13.96 55.43 0.77 -27.04 16 2 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 3 Si 0.88 22.32 27.47 -169.99 -4.67 17.65 16 4 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 6 H -0.26 -6.58 6.54 56.52 0.37 -6.21 16 7 C -0.53 -14.83 9.66 -34.44 -0.33 -15.17 16 8 H 0.07 2.14 7.99 -52.49 -0.42 1.72 16 9 C 0.00 0.03 3.33 -27.89 -0.09 -0.06 16 10 C -0.12 -2.25 5.64 -27.89 -0.16 -2.40 16 11 C 0.51 8.61 7.83 -10.98 -0.09 8.52 16 12 O -0.54 -11.24 15.98 5.55 0.09 -11.15 16 13 N -0.74 -8.63 5.55 -61.47 -0.34 -8.97 16 14 C 0.16 1.55 5.80 -5.19 -0.03 1.52 16 15 C -0.08 -0.64 5.25 -104.63 -0.55 -1.19 16 16 C -0.08 -0.53 9.69 -39.58 -0.38 -0.91 16 17 C -0.13 -0.84 10.02 -39.52 -0.40 -1.23 16 18 C 0.07 0.62 7.31 -39.36 -0.29 0.33 16 19 F -0.13 -1.28 17.18 2.25 0.04 -1.24 16 20 C 0.07 0.61 7.31 -39.36 -0.29 0.32 16 21 F -0.13 -1.35 17.18 2.25 0.04 -1.31 16 22 C -0.11 -0.86 9.68 -39.53 -0.38 -1.24 16 23 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 24 H 0.02 0.60 7.16 -51.93 -0.37 0.23 16 25 H 0.02 0.48 7.53 -51.92 -0.39 0.09 16 26 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 27 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 28 H 0.40 3.71 8.46 -40.82 -0.35 3.36 16 29 H 0.08 0.80 8.08 -51.93 -0.42 0.38 16 30 H 0.08 0.79 8.08 -51.93 -0.42 0.38 16 31 H 0.14 0.71 8.06 -52.48 -0.42 0.29 16 32 H 0.15 0.67 8.06 -52.49 -0.42 0.24 16 33 H 0.15 1.06 8.06 -52.49 -0.42 0.64 16 LS Contribution 301.14 15.07 4.54 4.54 Total: -1.00 -33.69 301.14 -6.26 -39.95 By element: Atomic # 1 Polarization: 0.81 SS G_CDS: -3.65 Total: -2.84 kcal Atomic # 6 Polarization: -6.50 SS G_CDS: -3.08 Total: -9.59 kcal Atomic # 7 Polarization: -36.44 SS G_CDS: 0.43 Total: -36.01 kcal Atomic # 8 Polarization: -11.24 SS G_CDS: 0.09 Total: -11.15 kcal Atomic # 9 Polarization: -2.63 SS G_CDS: 0.08 Total: -2.55 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -4.67 Total: 17.65 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -33.69 -6.26 -39.95 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292387513.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.860 kcal (2) G-P(sol) polarization free energy of solvation -33.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds