Wall clock time and date at job start Mon Mar 30 2020 02:10:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30822 * 1 3 3 Si 1.86805 * 119.99927 * 2 1 4 4 H 1.48498 * 109.47589 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46892 * 300.00392 * 3 2 1 6 6 H 1.48499 * 109.46851 * 59.99810 * 3 2 1 7 7 C 1.39933 * 120.00626 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00445 * 196.80559 * 7 2 1 9 9 C 1.41416 * 119.99631 * 16.80513 * 7 2 1 10 10 C 1.40781 * 120.20505 * 25.16814 * 9 7 2 11 11 C 1.37647 * 119.88651 * 180.02562 * 10 9 7 12 12 C 1.38525 * 120.32534 * 359.72273 * 11 10 9 13 13 C 1.39273 * 120.42455 * 0.55589 * 12 11 10 14 14 N 1.39845 * 119.95213 * 179.72611 * 13 12 11 15 15 C 1.34783 * 119.99578 * 325.51369 * 14 13 12 16 16 O 1.21526 * 120.00030 * 354.89654 * 15 14 13 17 17 C 1.48107 * 119.99748 * 174.89612 * 15 14 13 18 18 C 1.39468 * 120.09532 * 179.97438 * 17 15 14 19 19 N 1.32081 * 119.86586 * 179.77100 * 18 17 15 20 20 C 1.32141 * 120.07240 * 0.50481 * 19 18 17 21 21 C 1.38718 * 120.20047 * 359.49665 * 20 19 18 22 22 N 1.31793 * 120.13114 * 0.24933 * 21 20 19 23 23 C 1.38302 * 120.10159 * 359.44634 * 13 12 11 24 24 H 0.96993 * 120.00349 * 359.97438 * 1 2 3 25 25 H 1.07997 * 120.05902 * 359.97438 * 10 9 7 26 26 H 1.07997 * 119.83837 * 180.02562 * 11 10 9 27 27 H 1.08000 * 119.79056 * 180.30050 * 12 11 10 28 28 H 0.96993 * 120.00391 * 145.52072 * 14 13 12 29 29 H 1.07993 * 120.06812 * 0.02562 * 18 17 15 30 30 H 1.08000 * 119.89515 * 179.76816 * 20 19 18 31 31 H 1.08001 * 119.93550 * 180.27113 * 21 20 19 32 32 H 1.08000 * 120.16594 * 180.25749 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.7022 1.3466 -0.0006 5 1 1.8834 2.3965 -1.2125 6 1 1.8834 2.3964 1.2125 7 6 2.0080 -1.2118 -0.0005 8 1 3.0534 -1.2318 0.2698 9 6 1.3463 -2.4102 -0.3552 10 6 0.2111 -2.3730 -1.1870 11 6 -0.4282 -3.5434 -1.5276 12 6 0.0431 -4.7594 -1.0606 13 6 1.1616 -4.8111 -0.2322 14 7 1.6256 -6.0436 0.2382 15 6 0.7510 -7.0293 0.5215 16 8 -0.4441 -6.8183 0.4572 17 6 1.2465 -8.3696 0.9111 18 6 0.3434 -9.3908 1.2051 19 7 0.7903 -10.5856 1.5476 20 6 2.0904 -10.8102 1.6214 21 6 2.9912 -9.7965 1.3296 22 7 2.5541 -8.6027 0.9821 23 6 1.8175 -3.6460 0.1211 24 1 -0.4850 0.8400 0.0004 25 1 -0.1580 -1.4277 -1.5566 26 1 -1.2987 -3.5140 -2.1661 27 1 -0.4623 -5.6728 -1.3372 28 1 2.5766 -6.1891 0.3608 29 1 -0.7192 -9.2063 1.1488 30 1 2.4526 -11.7872 1.9054 31 1 4.0529 -9.9860 1.3870 32 1 2.6874 -3.6853 0.7600 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313495099.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:01 Heat of formation + Delta-G solvation = 16.395155 kcal Electronic energy + Delta-G solvation = -18739.191474 eV Core-core repulsion = 15663.822745 eV Total energy + Delta-G solvation = -3075.368729 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.090 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.38185 -40.94957 -39.00401 -36.31705 -35.56622 -34.77716 -32.82928 -31.79879 -30.09943 -27.23821 -26.56778 -25.59885 -23.45103 -22.83829 -21.65055 -19.57301 -19.31991 -18.49353 -17.80510 -17.38003 -16.86205 -16.72695 -16.33264 -16.22554 -15.47953 -15.28996 -14.84236 -14.64731 -14.11482 -13.89722 -13.56608 -13.02789 -12.92757 -12.83541 -12.75061 -12.45529 -12.34382 -11.96832 -11.49837 -11.41168 -11.11704 -10.83211 -10.55736 -10.23800 -9.44681 -8.82748 -8.61872 -6.37252 -0.75127 -0.04843 0.85293 0.94912 1.40773 1.49532 1.56453 1.71651 1.91740 2.22737 2.65877 2.76057 2.86132 3.15385 3.34226 3.68454 3.72385 4.05755 4.29807 4.40967 4.51357 4.62100 4.96468 4.99377 5.07748 5.15116 5.24657 5.31545 5.68398 5.78195 5.99398 6.05813 6.07596 6.23036 6.45311 6.61246 6.66349 6.90795 6.92723 7.08380 8.34146 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.041175 B = 0.003754 C = 0.003534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.867309 B = 7456.263547 C = 7921.215993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.034 3.966 3 Si 0.986 3.014 4 H -0.255 1.255 5 H -0.264 1.264 6 H -0.267 1.267 7 C -0.496 4.496 8 H 0.081 0.919 9 C 0.096 3.904 10 C -0.191 4.191 11 C -0.095 4.095 12 C -0.238 4.238 13 C 0.157 3.843 14 N -0.639 5.639 15 C 0.565 3.435 16 O -0.546 6.546 17 C 0.013 3.987 18 C 0.104 3.896 19 N -0.457 5.457 20 C 0.090 3.910 21 C 0.061 3.939 22 N -0.431 5.431 23 C -0.253 4.253 24 H 0.289 0.711 25 H 0.107 0.893 26 H 0.113 0.887 27 H 0.104 0.896 28 H 0.422 0.578 29 H 0.178 0.822 30 H 0.225 0.775 31 H 0.224 0.776 32 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.473 -16.151 2.555 17.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.181 4.181 3 Si 0.807 3.193 4 H -0.179 1.179 5 H -0.189 1.189 6 H -0.192 1.192 7 C -0.525 4.525 8 H 0.099 0.901 9 C 0.093 3.907 10 C -0.211 4.211 11 C -0.114 4.114 12 C -0.259 4.259 13 C 0.064 3.936 14 N -0.283 5.283 15 C 0.351 3.649 16 O -0.423 6.423 17 C -0.126 4.126 18 C -0.054 4.054 19 N -0.171 5.171 20 C -0.072 4.072 21 C -0.103 4.103 22 N -0.149 5.149 23 C -0.274 4.274 24 H 0.099 0.901 25 H 0.125 0.875 26 H 0.131 0.869 27 H 0.122 0.878 28 H 0.261 0.739 29 H 0.195 0.805 30 H 0.242 0.758 31 H 0.240 0.760 32 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 6.357 -15.839 2.499 17.249 hybrid contribution 0.349 0.856 0.057 0.926 sum 6.706 -14.983 2.555 16.613 Atomic orbital electron populations 1.69890 1.09152 1.30624 1.35477 1.26813 0.95484 1.04698 0.91095 0.85099 0.79462 0.75908 0.78850 1.17871 1.18910 1.19223 1.19850 0.98128 0.91981 1.42519 0.90079 1.17752 0.91599 0.92497 0.88845 1.21345 1.00177 0.96967 1.02611 1.20814 0.98784 0.92395 0.99440 1.20449 1.01488 0.97308 1.06614 1.17489 0.96428 0.83985 0.95660 1.43195 1.11236 1.10906 1.62962 1.18206 0.85664 0.83960 0.77056 1.90800 1.16426 1.82208 1.52864 1.21672 0.91907 0.95004 1.03989 1.23766 1.02166 0.87892 0.91539 1.68726 1.17890 1.19839 1.10688 1.24999 0.88312 1.02834 0.91104 1.24713 1.04601 0.87297 0.93715 1.68320 1.13651 1.24391 1.08512 1.20872 1.06209 0.91273 1.09060 0.90061 0.87538 0.86919 0.87758 0.73946 0.80497 0.75818 0.75961 0.87315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -43.74 10.94 21.82 0.24 -43.50 16 2 C 0.03 1.72 5.16 85.25 0.44 2.16 16 3 Si 0.99 38.00 29.59 68.60 2.03 40.03 16 4 H -0.26 -9.52 7.11 99.48 0.71 -8.81 16 5 H -0.26 -9.79 7.11 99.48 0.71 -9.09 16 6 H -0.27 -9.91 7.11 99.48 0.71 -9.20 16 7 C -0.50 -26.70 9.05 23.46 0.21 -26.49 16 8 H 0.08 4.16 7.90 -2.91 -0.02 4.13 16 9 C 0.10 5.28 5.57 -21.31 -0.12 5.16 16 10 C -0.19 -10.42 8.69 22.75 0.20 -10.22 16 11 C -0.10 -4.78 10.02 22.20 0.22 -4.55 16 12 C -0.24 -11.62 8.66 22.59 0.20 -11.42 16 13 C 0.16 7.38 6.24 38.13 0.24 7.62 16 14 N -0.64 -24.37 5.32 -306.02 -1.63 -26.00 16 15 C 0.56 20.92 7.54 86.86 0.66 21.57 16 16 O -0.55 -23.83 14.09 -3.80 -0.05 -23.88 16 17 C 0.01 0.36 6.75 41.88 0.28 0.64 16 18 C 0.10 2.60 10.77 84.95 0.92 3.52 16 19 N -0.46 -9.21 10.49 -194.11 -2.04 -11.24 16 20 C 0.09 1.06 11.23 84.76 0.95 2.01 16 21 C 0.06 0.78 11.22 84.81 0.95 1.73 16 22 N -0.43 -9.78 9.72 -184.36 -1.79 -11.58 16 23 C -0.25 -12.63 9.70 22.85 0.22 -12.41 16 24 H 0.29 13.75 8.30 -92.71 -0.77 12.98 16 25 H 0.11 5.98 6.16 -2.91 -0.02 5.96 16 26 H 0.11 5.01 8.06 -2.91 -0.02 4.99 16 27 H 0.10 4.98 6.48 -2.91 -0.02 4.96 16 28 H 0.42 13.69 8.18 -92.71 -0.76 12.93 16 29 H 0.18 4.45 7.65 -2.91 -0.02 4.43 16 30 H 0.23 0.34 8.06 -2.91 -0.02 0.32 16 31 H 0.22 0.69 8.06 -2.91 -0.02 0.66 16 32 H 0.11 5.01 8.06 -2.91 -0.02 4.99 16 Total: -1.00 -70.14 288.97 2.54 -67.60 By element: Atomic # 1 Polarization: 28.84 SS G_CDS: 0.42 Total: 29.26 kcal Atomic # 6 Polarization: -26.05 SS G_CDS: 5.37 Total: -20.69 kcal Atomic # 7 Polarization: -87.10 SS G_CDS: -5.22 Total: -92.31 kcal Atomic # 8 Polarization: -23.83 SS G_CDS: -0.05 Total: -23.88 kcal Atomic # 14 Polarization: 38.00 SS G_CDS: 2.03 Total: 40.03 kcal Total: -70.14 2.54 -67.60 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313495099.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.992 kcal (2) G-P(sol) polarization free energy of solvation -70.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.597 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds