Wall clock time and date at job start Mon Mar 30 2020 01:43:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34228 * 117.00427 * 2 1 4 4 O 1.20821 * 119.99665 * 0.02562 * 3 2 1 5 5 C 1.50704 * 119.99858 * 179.97438 * 3 2 1 6 6 N 1.46500 * 109.46644 * 180.02562 * 5 3 2 7 7 C 1.37093 * 120.00360 * 90.00614 * 6 5 3 8 8 H 1.07998 * 120.00381 * 157.04199 * 7 6 5 9 9 C 1.38952 * 119.99852 * 337.03965 * 7 6 5 10 10 N 1.31417 * 119.99720 * 8.57012 * 9 7 6 11 11 Si 1.86798 * 120.00349 * 188.56937 * 9 7 6 12 12 H 1.48501 * 109.47407 * 59.99755 * 11 9 7 13 13 H 1.48497 * 109.47265 * 179.97438 * 11 9 7 14 14 H 1.48502 * 109.46860 * 300.00128 * 11 9 7 15 15 C 1.34781 * 120.00098 * 269.72240 * 6 5 3 16 16 O 1.21299 * 119.99474 * 4.86018 * 15 6 5 17 17 C 1.50694 * 120.00393 * 184.85362 * 15 6 5 18 18 N 1.46506 * 109.47324 * 184.67422 * 17 15 6 19 19 C 1.34593 * 126.44164 * 125.00129 * 18 17 15 20 20 N 1.31064 * 106.67997 * 180.02562 * 19 18 17 21 21 N 1.28837 * 107.99119 * 359.97438 * 20 19 18 22 22 N 1.28735 * 109.39813 * 359.73510 * 21 20 19 23 23 H 1.08999 * 109.47324 * 59.99640 * 1 2 3 24 24 H 1.08994 * 109.47487 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46817 * 300.00355 * 1 2 3 26 26 H 1.08999 * 109.46986 * 60.00157 * 5 3 2 27 27 H 1.08994 * 109.47255 * 299.99941 * 5 3 2 28 28 H 0.97002 * 119.99689 * 174.98912 * 10 9 7 29 29 H 1.09003 * 109.46896 * 304.66753 * 17 15 6 30 30 H 1.08994 * 109.47239 * 64.66710 * 17 15 6 31 31 H 1.08000 * 126.65917 * 359.96118 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2092 0.0005 5 6 3.5664 1.2747 0.0006 6 7 3.9818 2.6795 0.0011 7 6 4.1759 3.3366 1.1885 8 1 4.8137 4.2073 1.2260 9 6 3.5518 2.8824 2.3439 10 7 2.9145 1.7331 2.3380 11 14 3.6188 3.9052 3.9056 12 1 2.9940 5.2293 3.6573 13 1 2.8809 3.2054 4.9877 14 1 5.0342 4.0944 4.3130 15 6 4.1788 3.3245 -1.1659 16 8 3.9276 2.7700 -2.2151 17 6 4.7108 4.7344 -1.1672 18 7 4.7296 5.2480 -2.5392 19 6 4.1457 6.3786 -2.9777 20 7 4.4043 6.4627 -4.2598 21 7 5.1107 5.4375 -4.5914 22 7 5.3141 4.7045 -3.5529 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 3.9564 0.7803 -0.8892 27 1 3.9557 0.7807 0.8908 28 1 2.5413 1.3812 3.1614 29 1 4.0693 5.3653 -0.5519 30 1 5.7229 4.7412 -0.7627 31 1 3.5741 7.0798 -2.3878 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348784621.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:32 Heat of formation + Delta-G solvation = 24.049132 kcal Electronic energy + Delta-G solvation = -21018.465210 eV Core-core repulsion = 17532.579119 eV Total energy + Delta-G solvation = -3485.886091 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.096 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.73551 -39.67192 -38.58825 -35.83509 -34.92327 -34.68144 -32.05740 -31.85440 -29.62341 -27.90912 -26.30895 -24.91477 -23.38879 -22.86900 -20.56377 -19.61918 -18.01896 -17.34946 -16.72379 -16.37330 -16.07653 -15.65833 -15.47102 -15.28670 -14.55475 -14.46552 -14.21135 -13.12283 -13.02439 -12.62569 -12.53398 -11.96650 -11.80756 -11.69422 -11.46861 -11.34384 -11.07924 -10.82353 -10.76677 -10.72077 -10.59951 -9.98591 -9.94638 -9.76669 -9.21686 -8.96914 -8.26913 -6.72262 -4.39764 1.67759 2.34231 2.64053 2.88903 2.99191 3.02654 3.23592 3.56032 3.65172 3.87057 4.24741 4.54376 4.70497 4.77094 5.28233 5.34936 5.50418 5.62245 5.69765 5.80600 5.84969 6.09071 6.11747 6.29462 6.46505 6.66643 6.97184 7.24304 7.41982 7.89477 8.64976 8.90985 9.01088 9.01560 9.36552 10.28234 Molecular weight = 269.10amu Principal moments of inertia in cm(-1) A = 0.017741 B = 0.007177 C = 0.005575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1577.842132 B = 3900.635025 C = 5021.313133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.372 6.372 3 C 0.492 3.508 4 O -0.514 6.514 5 C 0.157 3.843 6 N -0.420 5.420 7 C -0.347 4.347 8 H 0.105 0.895 9 C 0.050 3.950 10 N -0.875 5.875 11 Si 0.936 3.064 12 H -0.270 1.270 13 H -0.281 1.281 14 H -0.271 1.271 15 C 0.453 3.547 16 O -0.574 6.574 17 C 0.111 3.889 18 N -0.286 5.286 19 C 0.152 3.848 20 N -0.318 5.318 21 N -0.097 5.097 22 N -0.058 5.058 23 H 0.050 0.950 24 H 0.087 0.913 25 H 0.054 0.946 26 H 0.079 0.921 27 H 0.142 0.858 28 H 0.278 0.722 29 H 0.137 0.863 30 H 0.125 0.875 31 H 0.231 0.769 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.271 2.171 2.819 3.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.289 6.289 3 C 0.334 3.666 4 O -0.401 6.401 5 C 0.032 3.968 6 N -0.140 5.140 7 C -0.473 4.473 8 H 0.122 0.878 9 C -0.156 4.156 10 N -0.513 5.513 11 Si 0.762 3.238 12 H -0.195 1.195 13 H -0.206 1.206 14 H -0.196 1.196 15 C 0.239 3.761 16 O -0.457 6.457 17 C -0.014 4.014 18 N -0.088 5.088 19 C -0.147 4.147 20 N -0.166 5.166 21 N -0.091 5.091 22 N -0.045 5.045 23 H 0.068 0.932 24 H 0.105 0.895 25 H 0.073 0.927 26 H 0.097 0.903 27 H 0.160 0.840 28 H 0.090 0.910 29 H 0.155 0.845 30 H 0.143 0.857 31 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 0.310 1.647 1.234 2.081 hybrid contribution -0.866 0.712 2.196 2.466 sum -0.556 2.359 3.430 4.200 Atomic orbital electron populations 1.22937 0.78683 1.01930 1.01527 1.86456 1.21630 1.35307 1.85526 1.23832 0.92228 0.80512 0.70016 1.90499 1.66708 1.36500 1.46354 1.20722 0.87302 0.84460 1.04355 1.43214 1.57227 1.08790 1.04725 1.19614 1.29070 1.13360 0.85286 0.87761 1.25328 0.93713 0.96165 1.00351 1.69597 1.34896 1.17658 1.29197 0.85840 0.78620 0.79659 0.79677 1.19515 1.20608 1.19569 1.19660 0.84605 0.87087 0.84708 1.90703 1.56315 1.67482 1.31198 1.21996 1.06096 0.97887 0.75372 1.48331 1.33426 1.15997 1.11030 1.27595 1.01663 0.92052 0.93409 1.74871 1.14315 1.17839 1.09577 1.78566 1.13076 0.99041 1.18432 1.78967 1.15369 1.19438 0.90691 0.93168 0.89477 0.92740 0.90295 0.84037 0.91028 0.84478 0.85749 0.75308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.74 10.56 101.05 1.07 1.80 16 2 O -0.37 -7.76 10.56 -39.25 -0.41 -8.18 16 3 C 0.49 11.59 5.92 36.01 0.21 11.80 16 4 O -0.51 -13.48 15.94 -18.75 -0.30 -13.78 16 5 C 0.16 3.50 5.22 -5.19 -0.03 3.47 16 6 N -0.42 -9.35 2.11 -116.10 -0.25 -9.60 16 7 C -0.35 -7.39 9.02 -14.93 -0.13 -7.52 16 8 H 0.10 1.91 6.68 -52.49 -0.35 1.56 16 9 C 0.05 1.09 5.41 -17.46 -0.09 1.00 16 10 N -0.88 -20.30 8.21 55.50 0.46 -19.84 16 11 Si 0.94 17.23 29.56 -169.99 -5.03 12.20 16 12 H -0.27 -4.98 7.11 56.52 0.40 -4.58 16 13 H -0.28 -5.34 7.11 56.52 0.40 -4.94 16 14 H -0.27 -4.79 7.11 56.52 0.40 -4.39 16 15 C 0.45 9.79 7.65 -10.99 -0.08 9.70 16 16 O -0.57 -14.44 15.26 5.54 0.08 -14.35 16 17 C 0.11 1.78 5.43 -5.19 -0.03 1.76 16 18 N -0.29 -4.97 3.22 -63.74 -0.21 -5.17 16 19 C 0.15 2.26 12.79 -90.40 -1.16 1.11 16 20 N -0.32 -5.75 12.36 29.59 0.37 -5.39 16 21 N -0.10 -1.98 13.43 60.35 0.81 -1.17 16 22 N -0.06 -1.18 12.22 60.35 0.74 -0.44 16 23 H 0.05 0.84 8.13 -51.93 -0.42 0.41 16 24 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 25 H 0.05 0.94 8.13 -51.93 -0.42 0.52 16 26 H 0.08 1.70 7.49 -51.93 -0.39 1.31 16 27 H 0.14 3.14 6.28 -51.93 -0.33 2.82 16 28 H 0.28 6.26 8.32 -40.82 -0.34 5.92 16 29 H 0.14 1.81 7.75 -51.93 -0.40 1.41 16 30 H 0.12 1.67 8.01 -51.93 -0.42 1.26 16 31 H 0.23 2.10 8.06 -52.49 -0.42 1.68 16 LS Contribution 283.17 15.07 4.27 4.27 Total: -1.00 -32.25 283.17 -2.42 -34.67 By element: Atomic # 1 Polarization: 6.37 SS G_CDS: -2.71 Total: 3.66 kcal Atomic # 6 Polarization: 23.36 SS G_CDS: -0.25 Total: 23.12 kcal Atomic # 7 Polarization: -43.53 SS G_CDS: 1.92 Total: -41.61 kcal Atomic # 8 Polarization: -35.68 SS G_CDS: -0.63 Total: -36.31 kcal Atomic # 14 Polarization: 17.23 SS G_CDS: -5.03 Total: 12.20 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -32.25 -2.42 -34.67 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348784621.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.720 kcal (2) G-P(sol) polarization free energy of solvation -32.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.671 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds