Wall clock time and date at job start Mon Mar 30 2020 02:09:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31374 * 1 3 3 Si 1.86803 * 120.00096 * 2 1 4 4 H 1.48495 * 109.47240 * 240.00310 * 3 2 1 5 5 H 1.48502 * 109.46986 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.46879 * 120.00442 * 3 2 1 7 7 C 1.38975 * 119.99955 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00111 * 203.69002 * 7 2 1 9 9 N 1.36929 * 120.00199 * 23.69137 * 7 2 1 10 10 C 1.34769 * 119.99856 * 45.13653 * 9 7 2 11 11 O 1.21585 * 120.00520 * 3.31678 * 10 9 7 12 12 C 1.47681 * 120.00064 * 183.03367 * 10 9 7 13 13 C 1.40043 * 120.94464 * 25.55219 * 12 10 9 14 14 N 1.32127 * 118.90995 * 179.73927 * 13 12 10 15 15 C 1.31880 * 120.97987 * 0.56907 * 14 13 12 16 16 N 1.31876 * 122.11409 * 359.67864 * 15 14 13 17 17 C 1.32132 * 120.97593 * 0.02562 * 16 15 14 18 18 C 1.39707 * 119.99845 * 225.14449 * 9 7 2 19 19 C 1.38979 * 120.07769 * 230.67197 * 18 9 7 20 20 C 1.38080 * 119.91914 * 179.79168 * 19 18 9 21 21 C 1.38312 * 120.07881 * 0.46231 * 20 19 18 22 22 C 1.38308 * 120.16135 * 359.79032 * 21 20 19 23 23 C 1.38076 * 120.07828 * 359.97438 * 22 21 20 24 24 H 0.97006 * 119.99731 * 4.90907 * 1 2 3 25 25 H 1.08001 * 120.54244 * 0.02562 * 13 12 10 26 26 H 1.07993 * 118.94411 * 179.70123 * 15 14 13 27 27 H 1.08002 * 120.54605 * 179.97438 * 17 16 15 28 28 H 1.08000 * 120.04098 * 0.02655 * 19 18 9 29 29 H 1.07997 * 119.95867 * 180.25557 * 20 19 18 30 30 H 1.07997 * 119.91538 * 179.76668 * 21 20 19 31 31 H 1.07996 * 119.95916 * 179.97438 * 22 21 20 32 32 H 1.08004 * 120.03913 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3137 0.0000 0.0000 3 14 2.2478 1.6177 0.0000 4 1 3.1015 1.6965 -1.2125 5 1 1.2828 2.7465 0.0006 6 1 3.1016 1.6963 1.2125 7 6 2.0086 -1.2036 -0.0005 8 1 3.0204 -1.2432 0.3753 9 7 1.4105 -2.3392 -0.4775 10 6 0.7211 -2.3025 -1.6349 11 8 0.6805 -1.2766 -2.2862 12 6 0.0200 -3.5102 -2.1155 13 6 -0.4042 -4.5005 -1.2208 14 7 -1.0324 -5.5622 -1.6940 15 6 -1.2510 -5.7013 -2.9871 16 7 -0.8644 -4.7962 -3.8648 17 6 -0.2344 -3.7006 -3.4793 18 6 1.5149 -3.5360 0.2358 19 6 1.9251 -4.6972 -0.4083 20 6 2.0312 -5.8773 0.3008 21 6 1.7208 -5.9066 1.6483 22 6 1.3072 -4.7541 2.2914 23 6 1.2034 -3.5694 1.5898 24 1 -0.4850 0.8370 -0.0719 25 1 -0.2249 -4.3959 -0.1609 26 1 -1.7634 -6.5846 -3.3385 27 1 0.0795 -2.9640 -4.2041 28 1 2.1641 -4.6758 -1.4613 29 1 2.3538 -6.7791 -0.1981 30 1 1.8011 -6.8318 2.1995 31 1 1.0652 -4.7808 3.3436 32 1 0.8800 -2.6699 2.0925 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000354795606.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:43 Heat of formation + Delta-G solvation = 51.497143 kcal Electronic energy + Delta-G solvation = -20353.865067 eV Core-core repulsion = 17280.018475 eV Total energy + Delta-G solvation = -3073.846593 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.090 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.49409 -40.82274 -39.30203 -36.31773 -34.83840 -34.36106 -32.97486 -31.66826 -30.34697 -27.62070 -25.68949 -25.49376 -23.65476 -23.19051 -21.66213 -19.38710 -18.95520 -18.70082 -18.18141 -17.10828 -17.06226 -16.18115 -15.78883 -15.76545 -15.58776 -14.98013 -14.76822 -14.65034 -14.61274 -14.22431 -13.64007 -13.20741 -12.99686 -12.82139 -12.64058 -12.38095 -12.13814 -11.99860 -11.85511 -11.04148 -10.75939 -10.59292 -10.35809 -10.21772 -9.72936 -8.93030 -8.44541 -6.22790 -0.49313 -0.09582 0.46459 0.58651 1.34441 1.43076 1.48367 2.05475 2.25253 2.71422 2.79558 2.91354 3.09075 3.16970 3.20016 3.48270 3.72396 3.94324 4.07407 4.17569 4.38221 4.39501 4.63042 4.72483 4.76513 4.94825 5.19574 5.28960 5.33535 5.57745 5.65653 5.68987 5.79882 5.98479 6.17379 6.73002 6.83787 6.96001 7.33827 7.89867 8.61672 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.017408 B = 0.009096 C = 0.006514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.068718 B = 3077.584846 C = 4297.382529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.037 3.963 3 Si 0.973 3.027 4 H -0.278 1.278 5 H -0.282 1.282 6 H -0.253 1.253 7 C -0.370 4.370 8 H 0.087 0.913 9 N -0.406 5.406 10 C 0.523 3.477 11 O -0.567 6.567 12 C -0.236 4.236 13 C 0.188 3.812 14 N -0.523 5.523 15 C 0.298 3.702 16 N -0.528 5.528 17 C 0.187 3.813 18 C 0.128 3.872 19 C -0.167 4.167 20 C -0.090 4.090 21 C -0.134 4.134 22 C -0.093 4.093 23 C -0.148 4.148 24 H 0.269 0.731 25 H 0.171 0.829 26 H 0.242 0.758 27 H 0.174 0.826 28 H 0.101 0.899 29 H 0.147 0.853 30 H 0.159 0.841 31 H 0.150 0.850 32 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.886 -13.050 1.685 13.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C -0.172 4.172 3 Si 0.796 3.204 4 H -0.204 1.204 5 H -0.207 1.207 6 H -0.177 1.177 7 C -0.495 4.495 8 H 0.104 0.896 9 N -0.119 5.119 10 C 0.313 3.687 11 O -0.448 6.448 12 C -0.244 4.244 13 C 0.021 3.979 14 N -0.236 5.236 15 C 0.012 3.988 16 N -0.242 5.242 17 C 0.021 3.979 18 C 0.035 3.965 19 C -0.187 4.187 20 C -0.109 4.109 21 C -0.153 4.153 22 C -0.112 4.112 23 C -0.169 4.169 24 H 0.078 0.922 25 H 0.188 0.812 26 H 0.257 0.743 27 H 0.191 0.809 28 H 0.119 0.881 29 H 0.165 0.835 30 H 0.177 0.823 31 H 0.168 0.832 32 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 0.205 -13.159 1.068 13.204 hybrid contribution 0.666 2.278 0.113 2.376 sum 0.871 -10.882 1.181 10.980 Atomic orbital electron populations 1.69963 1.08204 1.29352 1.42167 1.26114 0.95392 1.02989 0.92687 0.85341 0.78443 0.77443 0.79178 1.20389 1.20697 1.17661 1.19242 0.97607 0.86117 1.46576 0.89578 1.41031 1.46495 1.07462 1.16865 1.18185 0.82422 0.87111 0.80961 1.90566 1.63612 1.33838 1.56799 1.21920 1.05909 0.98527 0.98031 1.24020 0.86063 0.86625 1.01163 1.68561 1.14686 1.22872 1.17531 1.26010 0.91143 0.97325 0.84362 1.68548 1.12728 1.02963 1.39918 1.23366 0.88340 0.93446 0.92741 1.18555 0.98327 0.86594 0.93044 1.21115 1.04323 0.93497 0.99800 1.21178 0.98218 0.96628 0.94832 1.21421 1.00448 0.99054 0.94328 1.21338 0.97773 0.91292 1.00763 1.21203 1.02615 0.99407 0.93660 0.92154 0.81179 0.74255 0.80878 0.88068 0.83546 0.82337 0.83199 0.87684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -50.53 12.35 21.67 0.27 -50.26 16 2 C 0.04 2.03 4.21 84.94 0.36 2.39 16 3 Si 0.97 44.18 29.62 68.60 2.03 46.21 16 4 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 5 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 6 H -0.25 -10.48 7.11 99.48 0.71 -9.77 16 7 C -0.37 -20.28 8.58 84.07 0.72 -19.56 16 8 H 0.09 4.59 7.94 -2.91 -0.02 4.57 16 9 N -0.41 -20.69 2.63 -462.09 -1.22 -21.90 16 10 C 0.52 27.22 6.61 86.74 0.57 27.79 16 11 O -0.57 -33.57 14.95 -3.98 -0.06 -33.63 16 12 C -0.24 -9.98 4.65 -19.91 -0.09 -10.08 16 13 C 0.19 7.06 7.90 85.09 0.67 7.73 16 14 N -0.52 -16.66 10.42 -198.91 -2.07 -18.73 16 15 C 0.30 8.18 12.27 180.83 2.22 10.40 16 16 N -0.53 -16.84 10.42 -198.91 -2.07 -18.91 16 17 C 0.19 6.98 10.89 85.08 0.93 7.90 16 18 C 0.13 5.36 3.42 38.24 0.13 5.49 16 19 C -0.17 -5.85 6.08 22.41 0.14 -5.72 16 20 C -0.09 -2.40 9.99 22.25 0.22 -2.18 16 21 C -0.13 -3.17 10.04 22.30 0.22 -2.95 16 22 C -0.09 -2.59 10.04 22.25 0.22 -2.36 16 23 C -0.15 -5.65 8.89 22.41 0.20 -5.45 16 24 H 0.27 15.14 8.31 -92.70 -0.77 14.37 16 25 H 0.17 6.70 4.53 -2.91 -0.01 6.68 16 26 H 0.24 4.05 8.06 -2.91 -0.02 4.03 16 27 H 0.17 6.28 7.94 -2.91 -0.02 6.26 16 28 H 0.10 3.73 7.23 -2.91 -0.02 3.70 16 29 H 0.15 3.02 8.06 -2.91 -0.02 2.99 16 30 H 0.16 2.49 8.06 -2.91 -0.02 2.47 16 31 H 0.15 3.19 8.06 -2.91 -0.02 3.17 16 32 H 0.10 4.51 7.95 -2.91 -0.02 4.49 16 Total: -1.00 -69.45 281.42 4.54 -64.90 By element: Atomic # 1 Polarization: 17.76 SS G_CDS: 1.15 Total: 18.91 kcal Atomic # 6 Polarization: 6.90 SS G_CDS: 6.51 Total: 13.41 kcal Atomic # 7 Polarization: -104.72 SS G_CDS: -5.10 Total: -109.81 kcal Atomic # 8 Polarization: -33.57 SS G_CDS: -0.06 Total: -33.63 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Total: -69.45 4.54 -64.90 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354795606.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.401 kcal (2) G-P(sol) polarization free energy of solvation -69.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.904 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds