Wall clock time and date at job start Mon Mar 30 2020 01:42:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42890 * 114.00033 * 2 1 4 4 C 1.52998 * 109.47540 * 180.02562 * 3 2 1 5 5 N 1.46508 * 109.47038 * 64.99675 * 4 3 2 6 6 C 1.46500 * 119.99501 * 5.38647 * 5 4 3 7 7 C 1.50703 * 109.46940 * 95.70035 * 6 5 4 8 8 C 1.33395 * 125.20342 * 85.00519 * 7 6 5 9 9 C 1.38424 * 114.91591 * 179.97438 * 8 7 6 10 10 C 1.33388 * 114.92449 * 0.02562 * 9 8 7 11 11 S 1.75882 * 109.59323 * 359.75369 * 10 9 8 12 12 C 1.34770 * 119.99966 * 185.38306 * 5 4 3 13 13 O 1.21689 * 120.00058 * 187.07351 * 12 5 4 14 14 C 1.46375 * 120.00466 * 7.07460 * 12 5 4 15 15 H 1.08001 * 120.00258 * 228.71108 * 14 12 5 16 16 C 1.40051 * 119.99522 * 48.70486 * 14 12 5 17 17 N 1.30662 * 120.00485 * 8.17780 * 16 14 12 18 18 Si 1.86808 * 119.99761 * 188.17155 * 16 14 12 19 19 H 1.48500 * 109.47013 * 0.02562 * 18 16 14 20 20 H 1.48493 * 109.47182 * 120.00399 * 18 16 14 21 21 H 1.48502 * 109.47078 * 240.00425 * 18 16 14 22 22 H 1.08999 * 109.46704 * 299.99804 * 1 2 3 23 23 H 1.08997 * 109.47113 * 60.00120 * 1 2 3 24 24 H 1.09004 * 109.47098 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47473 * 59.99988 * 3 2 1 26 26 H 1.09006 * 109.47602 * 299.99957 * 3 2 1 27 27 H 1.09002 * 109.47177 * 305.00102 * 4 3 2 28 28 H 1.09003 * 109.47471 * 185.00086 * 4 3 2 29 29 H 1.08998 * 109.46526 * 215.69191 * 6 5 4 30 30 H 1.08990 * 109.47514 * 335.69769 * 6 5 4 31 31 H 1.08000 * 122.53710 * 359.95693 * 8 7 6 32 32 H 1.08002 * 122.53509 * 180.02562 * 9 8 7 33 33 H 1.07995 * 125.20071 * 180.02562 * 10 9 8 34 34 H 0.96996 * 120.00759 * 183.86155 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9757 0.5643 -1.2528 6 6 3.0028 0.2785 -2.3102 7 6 2.9990 1.4079 -3.3079 8 6 3.8355 1.5249 -4.3403 9 6 3.6415 2.6495 -5.1237 10 6 2.6478 3.4462 -4.7271 11 16 1.8864 2.7701 -3.2930 12 6 5.2756 0.2568 -1.4318 13 8 5.6637 -0.1380 -2.5155 14 6 6.2205 0.3977 -0.3229 15 1 7.1564 0.9153 -0.4733 16 6 5.9110 -0.1388 0.9332 17 7 4.8587 -0.8999 1.0774 18 14 7.0027 0.2337 2.4026 19 1 8.1212 1.1132 1.9779 20 1 6.2049 0.9193 3.4508 21 1 7.5494 -1.0351 2.9474 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.6887 1.8463 0.8899 26 1 1.6886 1.8464 -0.8900 27 1 3.8515 0.5682 0.8409 28 1 3.9785 2.1765 0.0889 29 1 3.2750 -0.6495 -2.8130 30 1 2.0098 0.1769 -1.8725 31 1 4.6059 0.7973 -4.5490 32 1 4.2487 2.8656 -5.9903 33 1 2.3529 4.3635 -5.2148 34 1 4.6125 -1.2256 1.9572 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355493668.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:41 Heat of formation + Delta-G solvation = -33.407639 kcal Electronic energy + Delta-G solvation = -19198.684723 eV Core-core repulsion = 16224.307583 eV Total energy + Delta-G solvation = -2974.377140 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.087 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.67937 -37.28738 -36.80189 -34.03523 -33.08461 -30.26950 -28.65680 -26.64270 -25.94749 -24.98757 -22.62007 -21.50574 -19.38821 -18.62736 -17.34597 -16.40930 -16.12762 -15.75380 -15.12242 -15.00520 -14.70984 -14.18309 -13.76619 -13.42813 -12.77841 -12.52436 -12.29033 -12.08990 -11.94547 -11.71300 -11.58208 -11.22661 -11.17775 -10.98996 -10.77549 -10.54648 -10.34831 -10.32407 -10.09386 -9.28147 -8.67641 -8.32969 -8.03882 -7.79633 -7.02758 -6.48292 -4.64882 1.45496 2.07245 2.42481 3.06999 3.18788 3.24499 3.26921 4.08283 4.20322 4.39859 4.74232 5.26910 5.36820 5.44141 5.49921 5.58750 5.71571 5.79405 5.84765 5.88902 5.97018 6.09232 6.13113 6.55593 6.64427 6.70445 6.94891 7.04488 7.24989 7.46254 7.56736 7.75374 8.18212 8.43996 8.93872 9.32532 10.29202 10.50704 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.018974 B = 0.007862 C = 0.006239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.369302 B = 3560.674853 C = 4487.027846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.365 6.365 3 C 0.050 3.950 4 C 0.100 3.900 5 N -0.589 5.589 6 C 0.178 3.822 7 C -0.158 4.158 8 C -0.131 4.131 9 C -0.126 4.126 10 C -0.230 4.230 11 S 0.054 5.946 12 C 0.608 3.392 13 O -0.621 6.621 14 C -0.536 4.536 15 H 0.087 0.913 16 C 0.075 3.925 17 N -0.820 5.820 18 Si 0.904 3.096 19 H -0.265 1.265 20 H -0.275 1.275 21 H -0.277 1.277 22 H 0.035 0.965 23 H 0.034 0.966 24 H 0.081 0.919 25 H 0.049 0.951 26 H 0.040 0.960 27 H 0.134 0.866 28 H 0.052 0.948 29 H 0.081 0.919 30 H 0.091 0.909 31 H 0.149 0.851 32 H 0.133 0.867 33 H 0.155 0.845 34 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.774 6.359 -1.915 11.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.284 6.284 3 C -0.027 4.027 4 C -0.023 4.023 5 N -0.321 5.321 6 C 0.051 3.949 7 C -0.277 4.277 8 C -0.161 4.161 9 C -0.157 4.157 10 C -0.366 4.366 11 S 0.315 5.685 12 C 0.409 3.591 13 O -0.507 6.507 14 C -0.574 4.574 15 H 0.105 0.895 16 C -0.135 4.135 17 N -0.454 5.454 18 Si 0.729 3.271 19 H -0.189 1.189 20 H -0.200 1.200 21 H -0.202 1.202 22 H 0.054 0.946 23 H 0.053 0.947 24 H 0.100 0.900 25 H 0.067 0.933 26 H 0.058 0.942 27 H 0.150 0.850 28 H 0.070 0.930 29 H 0.099 0.901 30 H 0.109 0.891 31 H 0.167 0.833 32 H 0.151 0.849 33 H 0.173 0.827 34 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -10.713 6.280 -1.407 12.498 hybrid contribution 1.259 0.239 -0.112 1.287 sum -9.454 6.520 -1.519 11.584 Atomic orbital electron populations 1.22715 0.82811 1.02266 0.99279 1.88155 1.17986 1.27680 1.94560 1.22906 0.96090 0.84645 0.99030 1.22274 0.88879 0.98995 0.92180 1.47664 1.07388 1.63467 1.13589 1.19873 0.95207 0.92541 0.87259 1.25459 0.99765 1.00867 1.01607 1.20387 1.00872 0.99459 0.95345 1.20236 0.98766 0.95242 1.01502 1.25428 1.03747 1.05247 1.02135 1.83874 1.36888 1.19859 1.27844 1.18093 0.79965 0.73554 0.87447 1.90467 1.78231 1.51644 1.30357 1.21078 1.03890 1.38344 0.94070 0.89463 1.25576 0.95363 0.93304 0.99244 1.69600 1.24210 1.26704 1.24918 0.86332 0.80880 0.78909 0.80974 1.18855 1.20004 1.20233 0.94634 0.94694 0.90000 0.93280 0.94188 0.85032 0.93013 0.90093 0.89137 0.83328 0.84939 0.82726 0.91258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 11.00 101.05 1.11 1.46 16 2 O -0.37 -6.70 8.62 -35.23 -0.30 -7.01 16 3 C 0.05 0.89 5.29 37.16 0.20 1.09 16 4 C 0.10 2.17 5.40 -4.04 -0.02 2.15 16 5 N -0.59 -14.22 2.73 -176.72 -0.48 -14.70 16 6 C 0.18 3.82 4.98 -5.19 -0.03 3.80 16 7 C -0.16 -3.10 5.99 -36.00 -0.22 -3.32 16 8 C -0.13 -2.56 9.59 -41.21 -0.40 -2.96 16 9 C -0.13 -2.06 10.18 -41.21 -0.42 -2.48 16 10 C -0.23 -3.43 11.23 29.04 0.33 -3.10 16 11 S 0.05 0.86 21.59 -107.50 -2.32 -1.46 16 12 C 0.61 17.14 6.95 -12.99 -0.09 17.05 16 13 O -0.62 -18.81 15.49 5.20 0.08 -18.73 16 14 C -0.54 -14.88 8.93 -35.63 -0.32 -15.20 16 15 H 0.09 2.42 7.86 -52.49 -0.41 2.01 16 16 C 0.07 1.90 4.22 -17.37 -0.07 1.83 16 17 N -0.82 -21.14 10.32 55.55 0.57 -20.56 16 18 Si 0.90 19.18 29.57 -169.99 -5.03 14.16 16 19 H -0.26 -5.64 7.11 56.52 0.40 -5.24 16 20 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 21 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 22 H 0.04 0.42 8.14 -51.93 -0.42 -0.01 16 23 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 25 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 26 H 0.04 0.68 5.30 -51.93 -0.28 0.40 16 27 H 0.13 3.15 3.85 -52.46 -0.20 2.94 16 28 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.08 1.89 7.71 -51.93 -0.40 1.49 16 30 H 0.09 1.79 4.48 -51.93 -0.23 1.56 16 31 H 0.15 3.21 7.16 -52.49 -0.38 2.83 16 32 H 0.13 1.82 8.06 -52.49 -0.42 1.40 16 33 H 0.16 1.82 8.06 -52.49 -0.42 1.40 16 34 H 0.28 6.58 8.30 -40.82 -0.34 6.24 16 LS Contribution 294.87 15.07 4.44 4.44 Total: -1.00 -30.65 294.87 -6.95 -37.61 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: -3.99 Total: 5.94 kcal Atomic # 6 Polarization: 0.24 SS G_CDS: 0.07 Total: 0.31 kcal Atomic # 7 Polarization: -35.36 SS G_CDS: 0.09 Total: -35.27 kcal Atomic # 8 Polarization: -25.51 SS G_CDS: -0.22 Total: -25.74 kcal Atomic # 14 Polarization: 19.18 SS G_CDS: -5.03 Total: 14.16 kcal Atomic # 16 Polarization: 0.86 SS G_CDS: -2.32 Total: -1.46 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -30.65 -6.95 -37.61 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355493668.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.199 kcal (2) G-P(sol) polarization free energy of solvation -30.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds