Wall clock time and date at job start Mon Mar 30 2020 01:42:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42890 * 114.00033 * 2 1 4 4 C 1.52998 * 109.47540 * 180.02562 * 3 2 1 5 5 N 1.46508 * 109.47038 * 64.99675 * 4 3 2 6 6 C 1.46500 * 119.99501 * 5.38647 * 5 4 3 7 7 C 1.50703 * 109.46940 * 95.70035 * 6 5 4 8 8 C 1.33395 * 125.20342 * 85.00519 * 7 6 5 9 9 C 1.38424 * 114.91591 * 179.97438 * 8 7 6 10 10 C 1.33388 * 114.92449 * 0.02562 * 9 8 7 11 11 S 1.75882 * 109.59323 * 359.75369 * 10 9 8 12 12 C 1.34770 * 119.99966 * 185.38306 * 5 4 3 13 13 O 1.21689 * 120.00058 * 187.07351 * 12 5 4 14 14 C 1.46375 * 120.00466 * 7.07460 * 12 5 4 15 15 H 1.08001 * 120.00258 * 228.71108 * 14 12 5 16 16 C 1.40051 * 119.99522 * 48.70486 * 14 12 5 17 17 N 1.30662 * 120.00485 * 8.17780 * 16 14 12 18 18 Si 1.86808 * 119.99761 * 188.17155 * 16 14 12 19 19 H 1.48500 * 109.47013 * 0.02562 * 18 16 14 20 20 H 1.48493 * 109.47182 * 120.00399 * 18 16 14 21 21 H 1.48502 * 109.47078 * 240.00425 * 18 16 14 22 22 H 1.08999 * 109.46704 * 299.99804 * 1 2 3 23 23 H 1.08997 * 109.47113 * 60.00120 * 1 2 3 24 24 H 1.09004 * 109.47098 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47473 * 59.99988 * 3 2 1 26 26 H 1.09006 * 109.47602 * 299.99957 * 3 2 1 27 27 H 1.09002 * 109.47177 * 305.00102 * 4 3 2 28 28 H 1.09003 * 109.47471 * 185.00086 * 4 3 2 29 29 H 1.08998 * 109.46526 * 215.69191 * 6 5 4 30 30 H 1.08990 * 109.47514 * 335.69769 * 6 5 4 31 31 H 1.08000 * 122.53710 * 359.95693 * 8 7 6 32 32 H 1.08002 * 122.53509 * 180.02562 * 9 8 7 33 33 H 1.07995 * 125.20071 * 180.02562 * 10 9 8 34 34 H 0.96996 * 120.00759 * 183.86155 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9757 0.5643 -1.2528 6 6 3.0028 0.2785 -2.3102 7 6 2.9990 1.4079 -3.3079 8 6 3.8355 1.5249 -4.3403 9 6 3.6415 2.6495 -5.1237 10 6 2.6478 3.4462 -4.7271 11 16 1.8864 2.7701 -3.2930 12 6 5.2756 0.2568 -1.4318 13 8 5.6637 -0.1380 -2.5155 14 6 6.2205 0.3977 -0.3229 15 1 7.1564 0.9153 -0.4733 16 6 5.9110 -0.1388 0.9332 17 7 4.8587 -0.8999 1.0774 18 14 7.0027 0.2337 2.4026 19 1 8.1212 1.1132 1.9779 20 1 6.2049 0.9193 3.4508 21 1 7.5494 -1.0351 2.9474 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.6887 1.8463 0.8899 26 1 1.6886 1.8464 -0.8900 27 1 3.8515 0.5682 0.8409 28 1 3.9785 2.1765 0.0889 29 1 3.2750 -0.6495 -2.8130 30 1 2.0098 0.1769 -1.8725 31 1 4.6059 0.7973 -4.5490 32 1 4.2487 2.8656 -5.9903 33 1 2.3529 4.3635 -5.2148 34 1 4.6125 -1.2256 1.9572 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355493668.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:40 Heat of formation + Delta-G solvation = -53.456865 kcal Electronic energy + Delta-G solvation = -19199.554123 eV Core-core repulsion = 16224.307583 eV Total energy + Delta-G solvation = -2975.246540 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.087 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.42718 -38.70085 -38.42351 -35.96978 -35.00246 -31.80266 -30.28352 -28.49949 -27.20501 -26.58260 -24.04314 -23.19932 -21.24547 -20.07988 -19.13658 -17.97095 -17.55402 -17.30553 -16.82674 -16.61121 -16.30947 -15.78712 -15.31937 -15.07818 -14.45239 -13.96934 -13.79373 -13.62663 -13.57415 -13.41366 -13.11286 -12.97286 -12.69212 -12.48885 -12.36153 -12.19831 -12.05983 -11.99991 -11.60985 -10.74820 -10.46689 -10.07780 -9.55620 -9.32671 -8.92784 -8.44420 -6.75388 0.08556 0.73442 1.07513 1.38872 1.44418 1.58412 1.85386 2.28862 2.39866 2.89125 2.97317 3.25511 3.99795 4.13449 4.22705 4.32412 4.38720 4.44770 4.57582 4.60921 4.66675 4.76339 4.81222 4.88224 4.98265 5.26925 5.32044 5.50320 5.59798 5.64165 5.76002 6.28738 6.32294 6.37958 6.90196 7.31860 8.21006 8.53744 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.018974 B = 0.007862 C = 0.006239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.369302 B = 3560.674853 C = 4487.027846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.400 6.400 3 C 0.059 3.941 4 C 0.093 3.907 5 N -0.585 5.585 6 C 0.183 3.817 7 C -0.198 4.198 8 C -0.143 4.143 9 C -0.145 4.145 10 C -0.207 4.207 11 S 0.108 5.892 12 C 0.587 3.413 13 O -0.664 6.664 14 C -0.578 4.578 15 H 0.073 0.927 16 C 0.046 3.954 17 N -0.835 5.835 18 Si 0.978 3.022 19 H -0.269 1.269 20 H -0.250 1.250 21 H -0.273 1.273 22 H 0.056 0.944 23 H 0.048 0.952 24 H 0.091 0.909 25 H 0.079 0.921 26 H 0.050 0.950 27 H 0.115 0.885 28 H 0.052 0.948 29 H 0.044 0.956 30 H 0.109 0.891 31 H 0.112 0.888 32 H 0.156 0.844 33 H 0.198 0.802 34 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.758 8.500 -0.708 14.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.319 6.319 3 C -0.018 4.018 4 C -0.030 4.030 5 N -0.316 5.316 6 C 0.058 3.942 7 C -0.316 4.316 8 C -0.174 4.174 9 C -0.175 4.175 10 C -0.342 4.342 11 S 0.370 5.630 12 C 0.388 3.612 13 O -0.554 6.554 14 C -0.616 4.616 15 H 0.092 0.908 16 C -0.163 4.163 17 N -0.469 5.469 18 Si 0.799 3.201 19 H -0.193 1.193 20 H -0.174 1.174 21 H -0.198 1.198 22 H 0.074 0.926 23 H 0.067 0.933 24 H 0.110 0.890 25 H 0.097 0.903 26 H 0.068 0.932 27 H 0.132 0.868 28 H 0.070 0.930 29 H 0.063 0.937 30 H 0.127 0.873 31 H 0.130 0.870 32 H 0.174 0.826 33 H 0.215 0.785 34 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -12.767 8.429 -0.190 15.299 hybrid contribution 1.778 -0.455 -0.512 1.906 sum -10.988 7.974 -0.703 13.595 Atomic orbital electron populations 1.22952 0.80098 1.03582 1.00923 1.88092 1.20971 1.28000 1.94843 1.22770 0.93106 0.85002 1.00880 1.22293 0.92154 0.98159 0.90347 1.47557 1.06630 1.62372 1.15016 1.19788 0.95077 0.92317 0.87051 1.25214 1.02227 1.02586 1.01589 1.20393 1.00230 1.00249 0.96506 1.20327 1.00312 0.94486 1.02379 1.25966 1.01815 1.05613 1.00845 1.83546 1.34632 1.16862 1.27963 1.18439 0.81727 0.73854 0.87148 1.90416 1.79429 1.53766 1.31753 1.21168 1.04134 1.40624 0.95630 0.90849 1.26287 0.96694 0.92154 1.01155 1.69664 1.25026 1.25924 1.26271 0.85230 0.78855 0.78747 0.77242 1.19318 1.17434 1.19847 0.92564 0.93337 0.89013 0.90274 0.93241 0.86820 0.92960 0.93749 0.87287 0.86968 0.82605 0.78470 0.90206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.49 11.00 113.37 1.25 1.74 16 2 O -0.40 -14.12 8.62 -148.98 -1.28 -15.41 16 3 C 0.06 1.99 5.29 71.98 0.38 2.37 16 4 C 0.09 4.05 5.40 86.38 0.47 4.52 16 5 N -0.59 -29.37 2.73 -831.25 -2.27 -31.63 16 6 C 0.18 8.21 4.98 85.63 0.43 8.64 16 7 C -0.20 -7.87 5.99 24.59 0.15 -7.72 16 8 C -0.14 -5.80 9.59 21.22 0.20 -5.60 16 9 C -0.14 -4.54 10.18 21.22 0.22 -4.33 16 10 C -0.21 -5.44 11.23 66.72 0.75 -4.70 16 11 S 0.11 3.17 21.59 -56.49 -1.22 1.95 16 12 C 0.59 35.00 6.95 86.36 0.60 35.60 16 13 O -0.66 -43.26 15.49 -4.31 -0.07 -43.33 16 14 C -0.58 -33.54 8.93 24.83 0.22 -33.32 16 15 H 0.07 4.30 7.86 -2.91 -0.02 4.28 16 16 C 0.05 2.38 4.22 85.31 0.36 2.74 16 17 N -0.84 -43.46 10.32 21.84 0.23 -43.23 16 18 Si 0.98 39.20 29.57 68.60 2.03 41.23 16 19 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 20 H -0.25 -9.05 7.11 99.48 0.71 -8.34 16 21 H -0.27 -10.77 7.11 99.48 0.71 -10.07 16 22 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 23 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 24 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 25 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 26 H 0.05 1.56 5.30 -2.38 -0.01 1.55 16 27 H 0.12 5.46 3.85 -3.43 -0.01 5.45 16 28 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 29 H 0.04 2.25 7.71 -2.39 -0.02 2.23 16 30 H 0.11 4.37 4.48 -2.39 -0.01 4.36 16 31 H 0.11 5.31 7.16 -2.91 -0.02 5.29 16 32 H 0.16 4.04 8.06 -2.91 -0.02 4.02 16 33 H 0.20 3.52 8.06 -2.91 -0.02 3.49 16 34 H 0.29 13.51 8.30 -92.71 -0.77 12.74 16 Total: -1.00 -70.73 294.87 3.54 -67.18 By element: Atomic # 1 Polarization: 22.17 SS G_CDS: 1.11 Total: 23.28 kcal Atomic # 6 Polarization: -5.06 SS G_CDS: 5.02 Total: -0.04 kcal Atomic # 7 Polarization: -72.83 SS G_CDS: -2.04 Total: -74.87 kcal Atomic # 8 Polarization: -57.38 SS G_CDS: -1.35 Total: -58.74 kcal Atomic # 14 Polarization: 39.20 SS G_CDS: 2.03 Total: 41.23 kcal Atomic # 16 Polarization: 3.17 SS G_CDS: -1.22 Total: 1.95 kcal Total: -70.73 3.54 -67.18 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355493668.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.726 kcal (2) G-P(sol) polarization free energy of solvation -70.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds